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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914057
Clone id YMU001_000039_D05
Library
Length 263
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_D05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACTTATAGGGTGCACGAAAAGGAGATTAAGGTGCTTGAAGTAAAGACCCTACCATTGCCA
CCACCAAAAAGTATTCCCAATGCTTTTACTTTGTTCTTTGATGGAGCTTTTTGTCGAGCC
ACAGGAAAAGCAGGGGGAGGGCTAGTGTTGCTCAACCCAAGTGGAGAGGTGGTCATGAAA
GAGAAGTTCAATCTACCAAGTACAGCTAGCAACAATGAAGCAGAATATGACACTCTACTT
CATGGTTTGAAGATGTGCATTGG
■■Homology search results ■■ -
sp_hit_id P36921
Definition sp|P36921|EBSB_ENTFA Cell wall enzyme ebsB OS=Enterococcus faecalis
Align length 58
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914057|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_D05.
         (263 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36921|EBSB_ENTFA Cell wall enzyme ebsB OS=Enterococcus faeca...    31   1.7  
sp|P54162|RNHL_BACSU 14.7 kDa ribonuclease H-like protein OS=Bac...    31   2.2  
sp|P36858|NIA_ASPNG Nitrate reductase [NADPH] OS=Aspergillus nig...    30   2.9  
sp|Q5R807|FCHO2_PONAB FCH domain only protein 2 OS=Pongo abelii ...    30   2.9  
sp|Q0JRZ9|FCHO2_HUMAN FCH domain only protein 2 OS=Homo sapiens ...    30   2.9  
sp|Q53239|NIR_RHOS5 Copper-containing nitrite reductase OS=Rhodo...    30   3.8  
sp|Q00267|NHOA_SALTY N-hydroxyarylamine O-acetyltransferase OS=S...    30   5.0  
sp|Q9Z1Y0|RHOV_RAT Rho-related GTP-binding protein RhoV OS=Rattu...    29   8.5  
sp|Q8VDU1|RHOV_MOUSE Rho-related GTP-binding protein RhoV OS=Mus...    29   8.5  
sp|Q96L33|RHOV_HUMAN Rho-related GTP-binding protein RhoV OS=Hom...    29   8.5  
sp|P22945|NIA_EMENI Nitrate reductase [NADPH] OS=Emericella nidu...    29   8.5  
sp|A9L5N4|LEPA_SHEB9 GTP-binding protein lepA OS=Shewanella balt...    29   8.5  
sp|A6WKQ5|LEPA_SHEB8 GTP-binding protein lepA OS=Shewanella balt...    29   8.5  
sp|A3D1V4|LEPA_SHEB5 GTP-binding protein lepA OS=Shewanella balt...    29   8.5  
sp|Q3UQN2|FCHO2_MOUSE FCH domain only protein 2 OS=Mus musculus ...    29   8.5  

>sp|P36921|EBSB_ENTFA Cell wall enzyme ebsB OS=Enterococcus faecalis
           GN=ebsB PE=3 SV=2
          Length = 135

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 91  LFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLP-STASNNEAEYDTLLHGLKMCI 261
           ++ D A     G++GGG+V L        +++ ++P    SN+EAE+  L+  LK  I
Sbjct: 4   IYVDAATKGNPGESGGGIVYLTDQS----RQQLHVPLGIVSNHEAEFKVLIEALKKAI 57


>sp|P54162|RNHL_BACSU 14.7 kDa ribonuclease H-like protein
           OS=Bacillus subtilis GN=rnhA PE=1 SV=1
          Length = 132

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 91  LFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLP-STASNNEAEYDTLLHGLKMC 258
           ++ DGA     G +G G+ + +        E F++P    +N EAE+  L+ G+K+C
Sbjct: 5   IYVDGASAGNPGPSGIGIFIKHEG----KAESFSIPIGVHTNQEAEFLALIEGMKLC 57


>sp|P36858|NIA_ASPNG Nitrate reductase [NADPH] OS=Aspergillus
          niger GN=niaD PE=3 SV=1
          Length = 867

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +1

Query: 7  RVHEKEIKVLEVKTLPLPPPKSIP 78
          +VH++E+  +E+  +PLPPP   P
Sbjct: 25 KVHQEELPAVELSDIPLPPPSKEP 48


>sp|Q5R807|FCHO2_PONAB FCH domain only protein 2 OS=Pongo abelii
           GN=FCHO2 PE=2 SV=1
          Length = 810

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -1

Query: 167 SPLGLSNTSPPPAFPVARQKAPS 99
           SP   SNTSPPPA P+AR ++ S
Sbjct: 488 SPPVTSNTSPPPAAPLARAESSS 510


>sp|Q0JRZ9|FCHO2_HUMAN FCH domain only protein 2 OS=Homo sapiens
           GN=FCHO2 PE=1 SV=2
          Length = 810

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -1

Query: 167 SPLGLSNTSPPPAFPVARQKAPS 99
           SP   SNTSPPPA P+AR ++ S
Sbjct: 488 SPPVTSNTSPPPAAPLARAESSS 510


>sp|Q53239|NIR_RHOS5 Copper-containing nitrite reductase
           OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH
           2.4.3) GN=nirK PE=1 SV=2
          Length = 374

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +1

Query: 10  VHEKEIKVLEVKTLPLPPPKSIPNAFTLFFDGAFCRATGK-AGGGLVLLNPSGEVVMKEK 186
           VHE +   L   TL  PP  ++P+         F  ATG   GGGL L+NP  +VV++ K
Sbjct: 106 VHEGDYVEL---TLINPPENTMPHNID------FHAATGALGGGGLTLINPGEKVVLRFK 156


>sp|Q00267|NHOA_SALTY N-hydroxyarylamine O-acetyltransferase
           OS=Salmonella typhimurium GN=nhoA PE=1 SV=1
          Length = 281

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 17/64 (26%), Positives = 28/64 (43%)
 Frame = -3

Query: 201 TW*IELLFHDHLSTWVEQH*PSPCFSCGSTKSSIKEQSKSIGNTFWWWQW*GLYFKHLNL 22
           TW ++   H+H   W   +    CF  G     +++QS  +   FW   W   +F+H  L
Sbjct: 157 TWILQFRHHEH---WQSMY----CFDLG-----VQQQSDHVMGNFWSAHWPQSHFRHHLL 204

Query: 21  LFVH 10
           +  H
Sbjct: 205 MCRH 208


>sp|Q9Z1Y0|RHOV_RAT Rho-related GTP-binding protein RhoV OS=Rattus
           norvegicus GN=Rhov PE=1 SV=1
          Length = 236

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 164 PLGLSNTSPPP----AFPVARQKAPSKNKVKALGILFGGGNGRVFTSSTLISFSC 12
           P  LS   PPP      P  R+ AP +  +K + +    G+G V  SS ++S++C
Sbjct: 3   PRELSEAEPPPLPASTPPPRRRSAPPELGIKCVLV----GDGAVGKSSLIVSYTC 53


>sp|Q8VDU1|RHOV_MOUSE Rho-related GTP-binding protein RhoV OS=Mus
           musculus GN=Rhov PE=2 SV=1
          Length = 236

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 164 PLGLSNTSPPP----AFPVARQKAPSKNKVKALGILFGGGNGRVFTSSTLISFSC 12
           P  LS   PPP      P  R+ AP +  +K + +    G+G V  SS ++S++C
Sbjct: 3   PRELSEAEPPPLPASTPPPRRRSAPPELGIKCVLV----GDGAVGKSSLIVSYTC 53


>sp|Q96L33|RHOV_HUMAN Rho-related GTP-binding protein RhoV OS=Homo
           sapiens GN=RHOV PE=2 SV=1
          Length = 236

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
 Frame = -1

Query: 164 PLGLSNTSPPPAF----PVARQKAPSKNKVKALGILFGGGNGRVFTSSTLISFSC 12
           P  LS   PPP      P  R+ AP +  +K + +    G+G V  SS ++S++C
Sbjct: 3   PRELSEAEPPPLRAPTPPPRRRSAPPELGIKCVLV----GDGAVGKSSLIVSYTC 53
tr_hit_id Q8S463
Definition tr|Q8S463|Q8S463_MAIZE Putative prpol OS=Zea mays
Align length 69
Score (bit) 46.6
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914057|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_D05.
         (263 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8S463|Q8S463_MAIZE Putative prpol OS=Zea mays GN=Z092E12.13 ...    47   6e-04
tr|Q8S461|Q8S461_MAIZE Putative prpol OS=Zea mays GN=Z092E12.19 ...    46   8e-04
tr|Q7XP80|Q7XP80_ORYSJ OSJNBa0021F22.20 protein OS=Oryza sativa ...    46   8e-04
tr|Q7X7H5|Q7X7H5_ORYSA OSJNBa0085C10.2 protein OS=Oryza sativa G...    46   8e-04
tr|Q2R2X8|Q2R2X8_ORYSJ Retrotransposon protein, putative, unclas...    46   8e-04
tr|Q2QYW9|Q2QYW9_ORYSJ Retrotransposon protein, putative, unclas...    46   8e-04
tr|Q01LT5|Q01LT5_ORYSA OSIGBa0116O04.2 protein OS=Oryza sativa G...    46   8e-04
tr|Q7XK70|Q7XK70_ORYSJ OSJNBa0028M15.17 protein OS=Oryza sativa ...    46   0.001
tr|Q7G4P3|Q7G4P3_ORYSJ Retrotransposon protein, putative, unclas...    46   0.001
tr|Q6UUP4|Q6UUP4_ORYSJ Putative polyprotein OS=Oryza sativa subs...    46   0.001
tr|Q6UUJ5|Q6UUJ5_ORYSJ Putative polyprotein OS=Oryza sativa subs...    46   0.001
tr|Q10I05|Q10I05_ORYSJ Retrotransposon protein, putative, unclas...    46   0.001
tr|Q8S462|Q8S462_MAIZE Putative gag-pol-orf2 OS=Zea mays GN=Z092...    45   0.001
tr|Q7XRT6|Q7XRT6_ORYSJ OSJNBa0042F21.7 protein OS=Oryza sativa s...    45   0.001
tr|Q5CAH9|Q5CAH9_ORYSA OSJNBa0032N05.19 protein OS=Oryza sativa ...    45   0.001
tr|Q9SYC1|Q9SYC1_ARATH F11M15.5 protein OS=Arabidopsis thaliana ...    45   0.002
tr|Q75K41|Q75K41_ORYSJ Putative gag-pol protein OS=Oryza sativa ...    45   0.002
tr|Q10JS2|Q10JS2_ORYSJ Retrotransposon protein, putative, Ty3-gy...    45   0.002
tr|A5AI45|A5AI45_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|Q8GTL8|Q8GTL8_MAIZE Putative gag-pol OS=Zea mays GN=ZMRS072.1...    45   0.002
tr|Q6UUQ3|Q6UUQ3_ORYSJ Putative polyprotein OS=Oryza sativa subs...    45   0.002
tr|Q6UUM3|Q6UUM3_ORYSJ Putative gag-pol polyprotein OS=Oryza sat...    45   0.002
tr|Q2QT30|Q2QT30_ORYSJ Retrotransposon protein, putative, unclas...    45   0.002
tr|Q94LN5|Q94LN5_ORYSJ Putative retroelement pol polyprotein (Re...    44   0.003
tr|Q94HP1|Q94HP1_ORYSA Putative retroelement OS=Oryza sativa GN=...    44   0.003
tr|Q8W0Y2|Q8W0Y2_MAIZE Putative gag-pol OS=Zea mays GN=Z178A11.4...    44   0.003
tr|Q8S7Z2|Q8S7Z2_ORYSA Putative retroelement OS=Oryza sativa GN=...    44   0.003
tr|Q7XXJ2|Q7XXJ2_ORYSJ OSJNBa0094O15.10 protein OS=Oryza sativa ...    44   0.003
tr|Q6AVD1|Q6AVD1_ORYSJ Putative polyprotein OS=Oryza sativa subs...    44   0.003
tr|Q6AT01|Q6AT01_ORYSJ Putative polyprotein OS=Oryza sativa subs...    44   0.003

>tr|Q8S463|Q8S463_MAIZE Putative prpol OS=Zea mays GN=Z092E12.13 PE=4
            SV=1
          Length = 1854

 Score = 46.6 bits (109), Expect = 6e-04
 Identities = 28/69 (40%), Positives = 43/69 (62%)
 Frame = +1

Query: 55   LPPPKSIPNAFTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDT 234
            LP     P  +T+FFDG+  + TG AG GL+ ++P G+  ++    L   ASNN AEY+ 
Sbjct: 1313 LPTTPIQPELWTMFFDGSLMK-TG-AGAGLLFISPLGKH-LRYVLRLHFPASNNVAEYEA 1369

Query: 235  LLHGLKMCI 261
            L++GL++ I
Sbjct: 1370 LVNGLRIAI 1378


>tr|Q8S461|Q8S461_MAIZE Putative prpol OS=Zea mays GN=Z092E12.19 PE=4
            SV=1
          Length = 1850

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 28/69 (40%), Positives = 42/69 (60%)
 Frame = +1

Query: 55   LPPPKSIPNAFTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDT 234
            LP     P  +T+FFDG+  + TG AG GL+ ++P G   ++    L   ASNN AEY+ 
Sbjct: 1433 LPTTPIQPELWTMFFDGSLMK-TG-AGAGLLFISPLGRH-LRYVLRLHFPASNNVAEYEA 1489

Query: 235  LLHGLKMCI 261
            L++GL++ I
Sbjct: 1490 LVNGLRIAI 1498


>tr|Q7XP80|Q7XP80_ORYSJ OSJNBa0021F22.20 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0021F22.20 PE=4 SV=2
          Length = 861

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 24/57 (42%), Positives = 38/57 (66%)
 Frame = +1

Query: 85  FTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDTLLHGLKM 255
           +TLFFDG+ C  T   G GLV+++P G    +  + + S A+NN+AEY+ +L GL++
Sbjct: 518 WTLFFDGSVC--THGCGIGLVIISPRG-ACFEFAYTIKSYATNNQAEYEAVLKGLQL 571


>tr|Q7X7H5|Q7X7H5_ORYSA OSJNBa0085C10.2 protein OS=Oryza sativa
           GN=OSJNBa0085C10.2 PE=4 SV=1
          Length = 861

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 24/57 (42%), Positives = 38/57 (66%)
 Frame = +1

Query: 85  FTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDTLLHGLKM 255
           +TLFFDG+ C  T   G GLV+++P G    +  + + S A+NN+AEY+ +L GL++
Sbjct: 518 WTLFFDGSVC--THGCGIGLVIISPRG-ACFEFAYTIKSYATNNQAEYEAVLKGLQL 571


>tr|Q2R2X8|Q2R2X8_ORYSJ Retrotransposon protein, putative,
            unclassified OS=Oryza sativa subsp. japonica
            GN=LOC_Os11g34290 PE=4 SV=1
          Length = 1917

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 24/57 (42%), Positives = 39/57 (68%)
 Frame = +1

Query: 85   FTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDTLLHGLKM 255
            +TLFF+G+ C  T   G GLV+++P G    +  + + S A+NN+AEY+T+L GL++
Sbjct: 1518 WTLFFNGSVC--THGCGIGLVIISPRG-ACFEFAYTIKSYATNNQAEYETVLKGLQL 1571


>tr|Q2QYW9|Q2QYW9_ORYSJ Retrotransposon protein, putative,
           unclassified OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g01330 PE=4 SV=1
          Length = 823

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 24/57 (42%), Positives = 38/57 (66%)
 Frame = +1

Query: 85  FTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDTLLHGLKM 255
           +TLFFDG+ C  T   G GLV+++P G    +  + + S A+NN+AEY+ +L GL++
Sbjct: 540 WTLFFDGSVC--TRGCGIGLVIISPRG-ACFEFAYTIKSYATNNQAEYEAVLKGLQL 593


>tr|Q01LT5|Q01LT5_ORYSA OSIGBa0116O04.2 protein OS=Oryza sativa
            GN=OSIGBa0116O04.2 PE=4 SV=1
          Length = 1465

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 25/66 (37%), Positives = 42/66 (63%)
 Frame = +1

Query: 64   PKSIPNAFTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDTLLH 243
            P+ +   +T+ FDG+  +     G G+VL++P+GE  +   F +  +AS+N AEY+ LLH
Sbjct: 991  PEKMMEYWTMHFDGS--KRLSNTGAGVVLISPTGER-LSYVFWIHFSASHNVAEYEALLH 1047

Query: 244  GLKMCI 261
            GL++ I
Sbjct: 1048 GLRIVI 1053


>tr|Q7XK70|Q7XK70_ORYSJ OSJNBa0028M15.17 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0028M15.17 PE=4 SV=1
          Length = 1218

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 24/57 (42%), Positives = 38/57 (66%)
 Frame = +1

Query: 85  FTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDTLLHGLKM 255
           +TLFFDG+ C  T   G GLV+++P G V  +  + +   A+NN+AEY+ +L GL++
Sbjct: 744 WTLFFDGSVC--THGCGIGLVIISPRG-VCFEFAYTIKPYATNNQAEYEAVLKGLQL 797


>tr|Q7G4P3|Q7G4P3_ORYSJ Retrotransposon protein, putative,
            unclassified (Reverse transcriptase (RNA-dependent DNA
            polymerase), putative) OS=Oryza sativa subsp. japonica
            GN=LOC_Os10g11190 PE=4 SV=1
          Length = 1383

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 10/77 (12%)
 Frame = +1

Query: 55   LPPPKSIPNA----------FTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPST 204
            +PP K IP            +TLFFDG+ C  T   G GLV+++P G    +  + +   
Sbjct: 1003 IPPQKGIPFRLYLSAVEIVPWTLFFDGSVC--THGCGIGLVIISPRG-ACFEFAYTIKPY 1059

Query: 205  ASNNEAEYDTLLHGLKM 255
            A+NN AEY+ +L GL++
Sbjct: 1060 ATNNHAEYEAVLKGLQL 1076


>tr|Q6UUP4|Q6UUP4_ORYSJ Putative polyprotein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0095C12.1 PE=4 SV=1
          Length = 822

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 24/57 (42%), Positives = 38/57 (66%)
 Frame = +1

Query: 85  FTLFFDGAFCRATGKAGGGLVLLNPSGEVVMKEKFNLPSTASNNEAEYDTLLHGLKM 255
           +TLFFDG+ C  T   G GLV+++P GE   +  + +   A+NN+AEY+ +L GL++
Sbjct: 394 WTLFFDGSVC--THGCGIGLVIISPRGES-FEFAYTIKPYATNNQAEYEAVLKGLQL 447