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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914067
Clone id YMU001_000039_E03
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_E03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TCCAAAGGAACAACTCTCTTCAATCATGGTGCTACTAAAGCTACCTAGCTGAGACAGGCG
TAAAGAAGGCCAATGAGAGATGGCTATTGGCAATCTTCTGTACTCAATACAAGAAAAGAT
GCGAGAGAAAAAATATCAATGCATGTACCATCCCATAGAATGCGCATTCAGAGCTGCCAC
TCAAGATACTCATCAAGGTCTCTGTTGCTAGCATACTCCATCAAAGAGTTGGCTCTTAAG
TCTCTGTCGTGCCTCCAAGGGTAATTTAACCCTACCAACAGCTCCACAATAGCTGCCTCT
GCCTTGGCTTGATCTGCAAAATAAAGGGTCTGCAACAGTAGAACATTGGTTCTTGGAAGA
ACCTGCTGCTGCTCAAAGTTATGCTCTGATTGCCATCGAATCATATTGTGCGCCAATGGA
GCTAGCCACCCCAGAACTCTCTCTAACGTTTCCTTCCAATCTGCGACACCTTCTTCATCA
CAATCTGGTGATGCACACATCCTCATGC
■■Homology search results ■■ -
sp_hit_id Q9PLD1
Definition sp|Q9PLD1|UVRC_CHLMU UvrABC system protein C OS=Chlamydia muridarum
Align length 85
Score (bit) 30.8
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914067|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_E03.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9PLD1|UVRC_CHLMU UvrABC system protein C OS=Chlamydia murida...    31   3.8  
sp|A5IL06|UXAC_THEP1 Uronate isomerase OS=Thermotoga petrophila ...    30   8.4  
sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=2     30   8.4  

>sp|Q9PLD1|UVRC_CHLMU UvrABC system protein C OS=Chlamydia muridarum
           GN=uvrC PE=3 SV=2
          Length = 598

 Score = 30.8 bits (68), Expect = 3.8
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
 Frame = -3

Query: 506 MRMCASPDCDEEGVADWKETLERVLGWL--------APLAHNMIRWQSEHNFEQQQVLPR 351
           M+ C +P        +++ETLE+ + +L        A L   + +   EH FE    L R
Sbjct: 174 MKRCLAPCVGFCSQTEYQETLEKAILFLKGEVDTTIANLEEAIKKASQEHKFEHAAALYR 233

Query: 350 TNVLLLQTLYFADQAKAEAAIVELL 276
           T  L+ QT+      K +A  +++L
Sbjct: 234 TLTLIRQTMAKQHVEKFQAYDIDVL 258


>sp|A5IL06|UXAC_THEP1 Uronate isomerase OS=Thermotoga petrophila
           (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=uxaC PE=3
           SV=1
          Length = 451

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 23/100 (23%), Positives = 45/100 (45%), Gaps = 11/100 (11%)
 Frame = -3

Query: 479 DEEGVADWKETLERV-----------LGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLL 333
           D+EG   WKE +E++            G+L+ L      W+S  +F++   +   + LL 
Sbjct: 186 DKEG---WKEYVEKMGERYGEDTSTLEGFLSAL------WKSHEHFKEHGCVASDHALLE 236

Query: 332 QTLYFADQAKAEAAIVELLVGLNYPWRHDRDLRANSLMEY 213
            ++Y+ D+ +A A   +   G         D +A  +M++
Sbjct: 237 PSIYYVDENRARAIHEKAFSGEKLTQDEINDYKAFMMMQF 276


>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=2
          Length = 8797

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
 Frame = -3

Query: 461  DWKETLERVLGWLAP---LAHNMIRWQSEHNFEQQQVLPRT 348
            ++ E LE +L W+     LAH  I W S     +Q +L +T
Sbjct: 5531 EYNEMLELILKWIEKAKVLAHGTIAWNSASQLREQYILHQT 5571
tr_hit_id A9T360
Definition tr|A9T360|A9T360_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 113
Score (bit) 151.0
E-value 2.0e-35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914067|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_E03.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9T360|A9T360_PHYPA Predicted protein OS=Physcomitrella paten...   151   2e-35
tr|A9RSB7|A9RSB7_PHYPA Predicted protein (Fragment) OS=Physcomit...   131   2e-29
tr|A7NX45|A7NX45_VITVI Chromosome chr5 scaffold_2, whole genome ...   130   4e-29
tr|A5C6D9|A5C6D9_VITVI Putative uncharacterized protein OS=Vitis...   130   4e-29
tr|A7QBH5|A7QBH5_VITVI Chromosome chr13 scaffold_74, whole genom...   129   8e-29
tr|A5BLA8|A5BLA8_VITVI Putative uncharacterized protein OS=Vitis...   129   8e-29
tr|Q5H9X6|Q5H9X6_ORYSA P0650D04.6 protein OS=Oryza sativa GN=P06...   128   2e-28
tr|Q0JF28|Q0JF28_ORYSJ Os04g0169500 protein OS=Oryza sativa subs...   128   2e-28
tr|A2XQC0|A2XQC0_ORYSI Putative uncharacterized protein OS=Oryza...   128   2e-28
tr|Q9LTD4|Q9LTD4_ARATH Similarity to unknown protein OS=Arabidop...   124   3e-27
tr|Q0WVR1|Q0WVR1_ARATH Putative uncharacterized protein At3g2316...   124   3e-27
tr|A2ZI19|A2ZI19_ORYSI Putative uncharacterized protein OS=Oryza...   121   2e-26
tr|Q2QXR0|Q2QXR0_ORYSJ Expressed protein OS=Oryza sativa subsp. ...   120   4e-26
tr|Q0IQ45|Q0IQ45_ORYSJ Os12g0146500 protein OS=Oryza sativa subs...   120   4e-26
tr|A3CEX4|A3CEX4_ORYSJ Putative uncharacterized protein OS=Oryza...   120   4e-26
tr|A7QGU2|A7QGU2_VITVI Chromosome chr16 scaffold_94, whole genom...   119   8e-26
tr|Q2TM93|Q2TM93_NICSY Putative uncharacterized protein (Fragmen...   115   1e-24
tr|A7PPL3|A7PPL3_VITVI Chromosome chr8 scaffold_23, whole genome...   114   3e-24
tr|A5BEF8|A5BEF8_VITVI Putative uncharacterized protein OS=Vitis...   112   1e-23
tr|Q9LZ71|Q9LZ71_ARATH Putative uncharacterized protein T32M21_1...   109   9e-23
tr|Q9LTD7|Q9LTD7_ARATH Similarity to unknown protein OS=Arabidop...   102   1e-20
tr|Q84K32|Q84K32_ARATH Putative uncharacterized protein At5g5167...   102   1e-20
tr|Q1SN23|Q1SN23_MEDTR Putative uncharacterized protein OS=Medic...    97   4e-19
tr|B6TYC0|B6TYC0_MAIZE Putative uncharacterized protein OS=Zea m...    87   3e-16
tr|B4FP64|B4FP64_MAIZE Putative uncharacterized protein OS=Zea m...    87   3e-16
tr|A9SJR7|A9SJR7_PHYPA Predicted protein OS=Physcomitrella paten...    87   6e-16
tr|A7PNR6|A7PNR6_VITVI Chromosome chr8 scaffold_23, whole genome...    82   2e-14
tr|A5JV22|A5JV22_SOLLC Putative uncharacterized protein OS=Solan...    80   7e-14
tr|Q9FQZ2|Q9FQZ2_TOBAC Avr9/Cf-9 rapidly elicited protein 137 OS...    78   2e-13
tr|Q84M75|Q84M75_ORYSJ Putative uncharacterized protein OSJNBa00...    76   1e-12

>tr|A9T360|A9T360_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_191194 PE=4 SV=1
          Length = 521

 Score =  151 bits (382), Expect = 2e-35
 Identities = 75/113 (66%), Positives = 85/113 (75%), Gaps = 2/113 (1%)
 Frame = -3

Query: 506 MRMCASPDCDEEGVADWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQT 327
           MR C     D    ADWK+ LER+L WLAPLAHNMIRWQSEHNFEQQQV+ RTN LLLQT
Sbjct: 408 MRACEFGKYDSMIAADWKDALERILSWLAPLAHNMIRWQSEHNFEQQQVVSRTNCLLLQT 467

Query: 326 LYFADQAKAEAAIVELLVGLNYPWRHDRDLRANSLM--EYASNRDLDEYLEWQ 174
           LYFAD  K EA I ELLVGLNY   H+++L+ N++M  EYA N+D DEYL WQ
Sbjct: 468 LYFADLTKTEAVITELLVGLNYICGHEQELKQNTVMMEEYALNKDPDEYLGWQ 520


>tr|A9RSB7|A9RSB7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22604 PE=4 SV=1
          Length = 481

 Score =  131 bits (329), Expect = 2e-29
 Identities = 64/89 (71%), Positives = 69/89 (77%)
 Frame = -3

Query: 506 MRMCASPDCDEEGVADWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQT 327
           MR C     D    ADWK+ LER+L WLAPLAHNMIRWQSEHNFEQQQVL RTN LLLQT
Sbjct: 393 MRACEFGKYDSTIAADWKDALERILSWLAPLAHNMIRWQSEHNFEQQQVLSRTNCLLLQT 452

Query: 326 LYFADQAKAEAAIVELLVGLNYPWRHDRD 240
           LYFAD AK EAAI ELLVGLNY   H+++
Sbjct: 453 LYFADLAKTEAAITELLVGLNYVCGHEQE 481


>tr|A7NX45|A7NX45_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020176001
           PE=4 SV=1
          Length = 530

 Score =  130 bits (327), Expect = 4e-29
 Identities = 62/97 (63%), Positives = 79/97 (81%)
 Frame = -3

Query: 461 DWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQTLYFADQAKAEAAIVE 282
           DWKE L+ +L WLAPLAHNMIRWQSE NFEQQQ++ RTNVLLLQTLYFAD+ K E+AI E
Sbjct: 428 DWKERLDGILRWLAPLAHNMIRWQSERNFEQQQIVTRTNVLLLQTLYFADREKTESAICE 487

Query: 281 LLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLEWQL 171
           LLVGLNY  R++   + N+L++ AS+ D ++ +EWQ+
Sbjct: 488 LLVGLNYICRYEH--QQNALLDCASSFDFEDCMEWQM 522


>tr|A5C6D9|A5C6D9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017371 PE=4 SV=1
          Length = 583

 Score =  130 bits (327), Expect = 4e-29
 Identities = 62/97 (63%), Positives = 79/97 (81%)
 Frame = -3

Query: 461 DWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQTLYFADQAKAEAAIVE 282
           DWKE L+ +L WLAPLAHNMIRWQSE NFEQQQ++ RTNVLLLQTLYFAD+ K E+AI E
Sbjct: 481 DWKERLDGILRWLAPLAHNMIRWQSERNFEQQQIVTRTNVLLLQTLYFADREKTESAICE 540

Query: 281 LLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLEWQL 171
           LLVGLNY  R++   + N+L++ AS+ D ++ +EWQ+
Sbjct: 541 LLVGLNYICRYEH--QQNALLDCASSFDFEDCMEWQM 575


>tr|A7QBH5|A7QBH5_VITVI Chromosome chr13 scaffold_74, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034973001
           PE=4 SV=1
          Length = 602

 Score =  129 bits (324), Expect = 8e-29
 Identities = 63/105 (60%), Positives = 77/105 (73%)
 Frame = -3

Query: 494 ASPDCDEEGVADWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQTLYFA 315
           AS   D     +W E +  +L WLAPLAHNMIRWQSE +FEQQ ++ RTNVLL+QTLYFA
Sbjct: 495 ASSMYDTVLAGEWSEAMAGILEWLAPLAHNMIRWQSERSFEQQNLVSRTNVLLVQTLYFA 554

Query: 314 DQAKAEAAIVELLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLE 180
           DQ K EA I ELLVGLNY WR  R+L A +L+E AS++  +EYL+
Sbjct: 555 DQEKTEAIITELLVGLNYIWRFGRELNAKALLECASSKIFEEYLD 599


>tr|A5BLA8|A5BLA8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_002020 PE=4 SV=1
          Length = 357

 Score =  129 bits (324), Expect = 8e-29
 Identities = 63/105 (60%), Positives = 77/105 (73%)
 Frame = -3

Query: 494 ASPDCDEEGVADWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQTLYFA 315
           AS   D     +W E +  +L WLAPLAHNMIRWQSE +FEQQ ++ RTNVLL+QTLYFA
Sbjct: 250 ASSMYDTVLAGEWSEAMAGILEWLAPLAHNMIRWQSERSFEQQNLVSRTNVLLVQTLYFA 309

Query: 314 DQAKAEAAIVELLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLE 180
           DQ K EA I ELLVGLNY WR  R+L A +L+E AS++  +EYL+
Sbjct: 310 DQEKTEAIITELLVGLNYIWRFGRELNAKALLECASSKIFEEYLD 354


>tr|Q5H9X6|Q5H9X6_ORYSA P0650D04.6 protein OS=Oryza sativa
           GN=P0650D04.6 PE=4 SV=1
          Length = 542

 Score =  128 bits (321), Expect = 2e-28
 Identities = 60/97 (61%), Positives = 79/97 (81%)
 Frame = -3

Query: 461 DWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQTLYFADQAKAEAAIVE 282
           DW+ETLE+ L WLAP+AHNMIRWQ+E NFEQQQ++ + NVLLLQTLYFAD+ K EA I E
Sbjct: 447 DWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICE 506

Query: 281 LLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLEWQL 171
           LLVGLNY  R+++  + N+L++ +S+ D D+ +EWQL
Sbjct: 507 LLVGLNYICRYEQ--QQNALLDCSSSLDFDDCMEWQL 541


>tr|Q0JF28|Q0JF28_ORYSJ Os04g0169500 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0169500 PE=4 SV=1
          Length = 106

 Score =  128 bits (321), Expect = 2e-28
 Identities = 60/97 (61%), Positives = 79/97 (81%)
 Frame = -3

Query: 461 DWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQTLYFADQAKAEAAIVE 282
           DW+ETLE+ L WLAP+AHNMIRWQ+E NFEQQQ++ + NVLLLQTLYFAD+ K EA I E
Sbjct: 11  DWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICE 70

Query: 281 LLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLEWQL 171
           LLVGLNY  R+++  + N+L++ +S+ D D+ +EWQL
Sbjct: 71  LLVGLNYICRYEQ--QQNALLDCSSSLDFDDCMEWQL 105


>tr|A2XQC0|A2XQC0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_14830 PE=4 SV=1
          Length = 499

 Score =  128 bits (321), Expect = 2e-28
 Identities = 60/97 (61%), Positives = 79/97 (81%)
 Frame = -3

Query: 461 DWKETLERVLGWLAPLAHNMIRWQSEHNFEQQQVLPRTNVLLLQTLYFADQAKAEAAIVE 282
           DW+ETLE+ L WLAP+AHNMIRWQ+E NFEQQQ++ + NVLLLQTLYFAD+ K EA I E
Sbjct: 404 DWRETLEKTLTWLAPMAHNMIRWQAERNFEQQQIVLKGNVLLLQTLYFADREKTEAVICE 463

Query: 281 LLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLEWQL 171
           LLVGLNY  R+++  + N+L++ +S+ D D+ +EWQL
Sbjct: 464 LLVGLNYICRYEQ--QQNALLDCSSSLDFDDCMEWQL 498


>tr|Q9LTD4|Q9LTD4_ARATH Similarity to unknown protein OS=Arabidopsis
           thaliana PE=4 SV=1
          Length = 531

 Score =  124 bits (311), Expect = 3e-27
 Identities = 61/97 (62%), Positives = 78/97 (80%), Gaps = 1/97 (1%)
 Frame = -3

Query: 461 DWKETLERVLGWLAPLAHNMIRWQSEHNFEQQ-QVLPRTNVLLLQTLYFADQAKAEAAIV 285
           DWKET++ +L WLAPLAHNMIRWQSE NFEQQ Q++ RTNVLLLQTLYFAD+ K EAAI 
Sbjct: 428 DWKETIDGILSWLAPLAHNMIRWQSERNFEQQNQIVKRTNVLLLQTLYFADREKTEAAIC 487

Query: 284 ELLVGLNYPWRHDRDLRANSLMEYASNRDLDEYLEWQ 174
           +LLVGLNY   +++  + N+L++ AS+ D ++  EWQ
Sbjct: 488 KLLVGLNYICHYEQ--QQNALLDCASSFDYEDCFEWQ 522