BP914068
Clone id YMU001_000039_E04
Library
Length 420
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CAAAAAACAGACAGGTCAAAAGTTGACCTACCAACATACTTTGACCACAAGACCGCTCCC
TAGTAGATAGGAATCTCACCTCTTAACAAATTTAAAGGATCATTCTTTTAAGTAGAGGGA
AAGCATTATTTTATGTGATGCAAGATTTCTGTCATGTTTATCATCCACTGTGCATGATAT
TGAGGGTTGAATGTTCGTATTGAAACATTTTATTCTTTGTCCACCTTGATTTGGCGTTTT
ATGCTAGCGTTTATCCCCTTGTTTAGTTAGTAAGTTCTGACTTTTCTGACCTTATGGTGG
CACATTTGTGTTTGTGTGTGTGTGCTCGCACGCGCGACAATTCAACATAGTTGAACAAAG
CTGTATACTCACAAACTACATCTTCGAAGTTCTAACTTAGTTCATCGTTTACGGTCTATT
■■Homology search results ■■ -
sp_hit_id P17332
Definition sp|P17332|GLYC_LASSG Pre-glycoprotein polyprotein GP complex OS=Lassa virus (strain GA391)
Align length 48
Score (bit) 30.0
E-value 3.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914068|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_E04.
(420 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P17332|GLYC_LASSG Pre-glycoprotein polyprotein GP complex OS=... 30 3.9

>sp|P17332|GLYC_LASSG Pre-glycoprotein polyprotein GP complex
OS=Lassa virus (strain GA391) GN=GPC PE=3 SV=1
Length = 490

Score = 30.0 bits (66), Expect = 3.9
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = -1

Query: 267 TKQGDKR*HKTPNQGGQRIKCFNTNIQPSISCTVDDKHDRNLASHKIM 124
TK + N+ G + NT+I C + D H RNL H +M
Sbjct: 86 TKNNSHHYIRVGNETGLELTLTNTSILNHKFCNLSDAHKRNLYDHSLM 133


tr_hit_id Q86JG1
Definition tr|Q86JG1|Q86JG1_DICDI Putative uncharacterized protein OS=Dictyostelium discoideum
Align length 37
Score (bit) 34.3
E-value 3.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914068|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_E04.
(420 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q86JG1|Q86JG1_DICDI Putative uncharacterized protein OS=Dicty... 34 3.1
tr|Q4TC89|Q4TC89_TETNG Chromosome undetermined SCAF7042, whole g... 23 3.8
tr|A9V4W0|A9V4W0_MONBE Predicted protein OS=Monosiga brevicollis... 24 6.9
tr|Q4SSR2|Q4SSR2_TETNG Chromosome undetermined SCAF14347, whole ... 25 8.1

>tr|Q86JG1|Q86JG1_DICDI Putative uncharacterized protein
OS=Dictyostelium discoideum GN=DDB_0168420 PE=4 SV=1
Length = 728

Score = 34.3 bits (77), Expect = 3.1
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1

Query: 225 GGQRIKCFNTNIQPSISCTVDDKHDRNLASHKIMLSL 115
G +RI+CFNTN SI+CT+ + + + I L++
Sbjct: 120 GNKRIECFNTNSSKSITCTLPTRKNYGFLGYNIPLTV 156


>tr|Q4TC89|Q4TC89_TETNG Chromosome undetermined SCAF7042, whole
genome shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00003418001 PE=4 SV=1
Length = 1481

Score = 23.5 bits (49), Expect(4) = 3.8
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1

Query: 301 HICVCVCV 324
H+CVCVCV
Sbjct: 46 HLCVCVCV 53



Score = 23.1 bits (48), Expect(4) = 3.8
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3

Query: 300 AHLCLCVC 323
AHLC+CVC
Sbjct: 45 AHLCVCVC 52



Score = 21.9 bits (45), Expect(4) = 3.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = +1

Query: 304 ICVCVCVLA 330
+CVCVCV A
Sbjct: 51 VCVCVCVCA 59



Score = 20.8 bits (42), Expect(4) = 3.8
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +3

Query: 312 LCVCARTR 335
+CVCARTR
Sbjct: 65 VCVCARTR 72


>tr|A9V4W0|A9V4W0_MONBE Predicted protein OS=Monosiga brevicollis
GN=33346 PE=4 SV=1
Length = 394

Score = 23.9 bits (50), Expect(3) = 6.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +3

Query: 291 LMVAHLCLCVC 323
L+ AH+C+CVC
Sbjct: 86 LLYAHVCVCVC 96



Score = 23.9 bits (50), Expect(3) = 6.9
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1

Query: 301 HICVCVCV 324
H+CVCVCV
Sbjct: 90 HVCVCVCV 97



Score = 22.7 bits (47), Expect(3) = 6.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1

Query: 304 ICVCVCVLARATIQHS*TK 360
+CVCVCV T H+ T+
Sbjct: 97 VCVCVCVHVTRTPIHAPTQ 115


>tr|Q4SSR2|Q4SSR2_TETNG Chromosome undetermined SCAF14347, whole
genome shotgun sequence OS=Tetraodon nigroviridis
GN=GSTENG00013300001 PE=4 SV=1
Length = 1014

Score = 25.0 bits (53), Expect(3) = 8.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = +3

Query: 291 LMVAHLCLCVC 323
+ VAHLC+CVC
Sbjct: 549 ISVAHLCVCVC 559



Score = 23.5 bits (49), Expect(3) = 8.1
Identities = 7/8 (87%), Positives = 8/8 (100%)
Frame = +1

Query: 301 HICVCVCV 324
H+CVCVCV
Sbjct: 553 HLCVCVCV 560



Score = 21.6 bits (44), Expect(3) = 8.1
Identities = 7/14 (50%), Positives = 9/14 (64%)
Frame = +1

Query: 304 ICVCVCVLARATIQ 345
+CVCVCV + Q
Sbjct: 558 VCVCVCVCVCVSFQ 571