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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914079
Clone id YMU001_000039_F03
Library
Length 591
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_F03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGATATTACCTGCAGGTACTCCAAGAACCATGATTCAAATAGAGTTGTGTATACATAAA
AGCCAGTATTAAGTGCACGAAATGGTCATTCGGGTGGAAAGCCAACGCAGCTACTCTTCA
ATGTCTCCGAGGTACCATTCCTGCAATTCTACCTGTCCAACAAGGACCTCAGCAGTTTAC
ACAAGAATGTGATATCTACATTCTCTCTATCCAAGTACCTTCCAACACAAAAACTGGAGC
CCGTGTTGCCACAAAAGCCCTTCCTTTGCAGCCAAAATAAATGAAGATCTTATGATTACA
TGACAAACCCAGTTGACACCACAAGTTCATGGAGTTGGCGCAATAAAGCCAAAAACTCTT
CAGAAATATCTGAGGCAATAGGTGAAGCCAGAGACCTTGGTCCGGCTCTCAGAACAACAG
AAGATGGTGCAACAGCACCAGGTTGAATTCCATCCAGCTTTCCTTGGCCAGGACCTAAGA
CTCCAATAGGAGCTTTCTCTGAAGCACTGGCATAAATCACTGACAGCGTAGCATTCTCAA
GCACATGCTTGGATGGCAAAGCACCTTCTGAGTACCTGCAGGTAATATCTC
■■Homology search results ■■ -
sp_hit_id Q03QP1
Definition sp|Q03QP1|UVRC_LACBA UvrABC system protein C OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170)
Align length 26
Score (bit) 32.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914079|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_F03.
         (591 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03QP1|UVRC_LACBA UvrABC system protein C OS=Lactobacillus br...    32   2.4  
sp|P58106|Y118_CHLMU Uncharacterized RNA methyltransferase TC_01...    31   4.0  
sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit...    31   4.0  
sp|P26640|SYVC_HUMAN Valyl-tRNA synthetase OS=Homo sapiens GN=VA...    31   5.3  
sp|Q2GW22|MED19_CHAGB Mediator of RNA polymerase II transcriptio...    30   6.9  
sp|P81546|TIMP1_CANFA Metalloproteinase inhibitor 1 OS=Canis fam...    30   9.0  
sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus mus...    30   9.0  
sp|P0C0E7|KITH_VZVP Thymidine kinase OS=Varicella-zoster virus (...    30   9.0  
sp|P0C0E6|KITH_VZVO Thymidine kinase OS=Varicella-zoster virus (...    30   9.0  
sp|P0C0E5|KITH_VZVE Thymidine kinase OS=Varicella-zoster virus (...    30   9.0  
sp|P14342|KITH_VZV7 Thymidine kinase OS=Varicella-zoster virus (...    30   9.0  
sp|Q9P8W3|ACE1_TRIRE Zinc finger transcription factor ace1 OS=Tr...    30   9.0  

>sp|Q03QP1|UVRC_LACBA UvrABC system protein C OS=Lactobacillus
           brevis (strain ATCC 367 / JCM 1170) GN=uvrC PE=3 SV=1
          Length = 605

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -1

Query: 147 IAGMVPRRH*RVAALAFHPNDHFVHL 70
           +AGMV   H + A L F P+DH VHL
Sbjct: 477 VAGMVKNDHHKTADLLFGPDDHHVHL 502


>sp|P58106|Y118_CHLMU Uncharacterized RNA methyltransferase TC_0118
           OS=Chlamydia muridarum GN=TC_0118 PE=3 SV=1
          Length = 397

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 210 SKYLPTQKLEPVLPQKPFLCSQNK*RSYDYMTNPVDTTSSWSWRNKAKNSSEISEAI 380
           S  +P+QK+ PV+P  P L  +NK     Y T   + T  +   +K K    I+E +
Sbjct: 40  SPLIPSQKILPVIPCSPILRGRNKMEFSFYQTVDGEKTLGFISPSKPKKGIPITECL 96


>sp|Q8C7E9|CSTFT_MOUSE Cleavage stimulation factor 64 kDa subunit,
           tau variant OS=Mus musculus GN=Cstf2t PE=1 SV=2
          Length = 632

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 17/38 (44%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
 Frame = +3

Query: 390 RDLGPALRTT-EDGATAPG*IPSSFPWPGP--KTPIGA 494
           +D+ P ++T+ + G  APG IP++ P PGP   TP GA
Sbjct: 259 KDIPPLMQTSIQGGIPAPGPIPAAVPGPGPGSLTPGGA 296


>sp|P26640|SYVC_HUMAN Valyl-tRNA synthetase OS=Homo sapiens GN=VARS
           PE=1 SV=4
          Length = 1264

 Score = 30.8 bits (68), Expect = 5.3
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +1

Query: 235 WSPCCHKSPSFAAKINEDLMIT*QTQLTPQVHGVGAIKPKTLQKYLRQ*VKPETLVRLSE 414
           W   C + P F A + E ++ +    L+ Q        PKT  +  ++  K E L +  +
Sbjct: 190 WFVTCVRQPEFRAVLGEVVLYSGARPLSHQPGPEAPALPKTAAQLKKEAKKREKLEKFQQ 249

Query: 415 QQKMVQQ 435
           +QK+ QQ
Sbjct: 250 KQKIQQQ 256


>sp|Q2GW22|MED19_CHAGB Mediator of RNA polymerase II transcription
           subunit 19 OS=Chaetomium globosum GN=ROX3 PE=3 SV=3
          Length = 326

 Score = 30.4 bits (67), Expect = 6.9
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = -3

Query: 499 EKAPIGVLGPGQGKLDGIQPGAVAPSSVVLRAGPRSLASP 380
           + + +G +GPG+G+   +     AP++ +  AGP+ L  P
Sbjct: 224 DSSVLGEMGPGKGERQALSARPTAPNTPLPSAGPQGLPRP 263


>sp|P81546|TIMP1_CANFA Metalloproteinase inhibitor 1 OS=Canis
           familiaris GN=TIMP1 PE=1 SV=2
          Length = 207

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 4/42 (9%)
 Frame = -2

Query: 485 WSLRSWPRKAGWNSTWCC----CTIFCCSESRTKVSGFTYCL 372
           WS  S  ++ G+  T+      CT+F CS    K+   T+CL
Sbjct: 128 WSSLSTAQRRGFTKTYAAGCEGCTVFTCSSIPCKLQSDTHCL 169


>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus
            GN=Smarcc2 PE=1 SV=2
          Length = 1213

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = +3

Query: 369  SEAIGEARDLGPALRTTEDGATAPG*IPSSFPWPGPKTP 485
            SE IG+A       +  + GA  PG +P   P PGP  P
Sbjct: 1010 SEQIGQAGTTAGPQQPQQAGAPQPGAVPPGVPPPGPHGP 1048


>sp|P0C0E7|KITH_VZVP Thymidine kinase OS=Varicella-zoster virus
           (strain ppIIa) GN=36 PE=3 SV=1
          Length = 341

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 83  WSFGWKANAATLQCLRGTIPAILPVQQGPQQFTQECDIYILSIQVPSNTKTGA 241
           W++G +  +    CLR   P +L ++Q PQ   QE    +L    P+N  +GA
Sbjct: 277 WAWGMETLS---NCLRSMSPFVLSLEQTPQHAAQELKT-LLPQMTPANMSSGA 325


>sp|P0C0E6|KITH_VZVO Thymidine kinase OS=Varicella-zoster virus
           (strain Oka vaccine) GN=36 PE=1 SV=1
          Length = 341

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 83  WSFGWKANAATLQCLRGTIPAILPVQQGPQQFTQECDIYILSIQVPSNTKTGA 241
           W++G +  +    CLR   P +L ++Q PQ   QE    +L    P+N  +GA
Sbjct: 277 WAWGMETLS---NCLRSMSPFVLSLEQTPQHAAQELKT-LLPQMTPANMSSGA 325


>sp|P0C0E5|KITH_VZVE Thymidine kinase OS=Varicella-zoster virus
           (strain Ellen) GN=36 PE=3 SV=1
          Length = 341

 Score = 30.0 bits (66), Expect = 9.0
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 83  WSFGWKANAATLQCLRGTIPAILPVQQGPQQFTQECDIYILSIQVPSNTKTGA 241
           W++G +  +    CLR   P +L ++Q PQ   QE    +L    P+N  +GA
Sbjct: 277 WAWGMETLS---NCLRSMSPFVLSLEQTPQHAAQELKT-LLPQMTPANMSSGA 325
tr_hit_id B3FJA6
Definition tr|B3FJA6|B3FJA6_9CAUD Putative uncharacterized protein OS=Pseudomonas phage 201phi2-1
Align length 98
Score (bit) 36.2
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914079|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_F03.
         (591 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3FJA6|B3FJA6_9CAUD Putative uncharacterized protein OS=Pseud...    36   1.4  
tr|Q8XNX0|Q8XNX0_CLOPE Putative uncharacterized protein CPE0212 ...    35   2.4  
tr|Q0TUM4|Q0TUM4_CLOP1 Putative uncharacterized protein OS=Clost...    35   2.4  
tr|B1V2E9|B1V2E9_CLOPE Putative uncharacterized protein OS=Clost...    35   2.4  
tr|B1RRT3|B1RRT3_CLOPE Putative uncharacterized protein OS=Clost...    35   2.4  
tr|B1RHE7|B1RHE7_CLOPE Putative uncharacterized protein OS=Clost...    35   2.4  
tr|B1R8B2|B1R8B2_CLOPE Putative uncharacterized protein OS=Clost...    35   2.4  
tr|B1BUE8|B1BUE8_CLOPE Putative uncharacterized protein OS=Clost...    35   2.4  
tr|B1BH55|B1BH55_CLOPE Putative uncharacterized protein OS=Clost...    35   2.4  
tr|Q3Y0C3|Q3Y0C3_ENTFC Amino acid permease-associated region (Fr...    35   4.1  
tr|Q0IET3|Q0IET3_AEDAE Putative uncharacterized protein OS=Aedes...    35   4.2  
tr|A6WAA4|A6WAA4_KINRD Putative uncharacterized protein OS=Kineo...    34   7.1  
tr|A4XI87|A4XI87_CALS8 Fibronectin, type III domain protein OS=C...    34   7.1  
tr|B5HWH0|B5HWH0_9ACTO 4-carboxy-4-hydroxy-2-oxoadipate aldolase...    34   7.1  
tr|B4KFJ1|B4KFJ1_DROMO GI21646 OS=Drosophila mojavensis GN=GI216...    34   7.1  
tr|Q2H6R4|Q2H6R4_CHAGB Predicted protein OS=Chaetomium globosum ...    33   9.2  

>tr|B3FJA6|B3FJA6_9CAUD Putative uncharacterized protein
           OS=Pseudomonas phage 201phi2-1 GN=201phi2-1p244 PE=4
           SV=1
          Length = 161

 Score = 36.2 bits (82), Expect = 1.4
 Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
 Frame = +3

Query: 93  GGKPTQLLFNVSEVPFLQFYLS--NKDLSSLHKNVISTFSLSKYLPTQKLEPVLPQKPFL 266
           G  PT  LFN     + ++ L+  N  +  +   V ST+    YL  QK +   P+  F 
Sbjct: 14  GSDPTLHLFNALNEAYPEYELTRENSRILKIQPAVTSTYPNLTYLRIQKGDD--PEDVFE 71

Query: 267 CSQNK*RSYDYMTNPVDTTSSWSWRNKAKNSSEISEAI 380
              N+    DY+TNP+ T S  +      NS+++ + I
Sbjct: 72  FFYNRYNINDYITNPLFTASEAAQAAALPNSAKLVDVI 109


>tr|Q8XNX0|Q8XNX0_CLOPE Putative uncharacterized protein CPE0212
           OS=Clostridium perfringens GN=CPE0212 PE=4 SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIKDEYL 255


>tr|Q0TUM4|Q0TUM4_CLOP1 Putative uncharacterized protein
           OS=Clostridium perfringens (strain ATCC 13124 / NCTC
           8237 / Type A) GN=CPF_0203 PE=4 SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIEDEYL 255


>tr|B1V2E9|B1V2E9_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens D str. JGS1721 GN=CJD_0256
           PE=4 SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIKDEYL 255


>tr|B1RRT3|B1RRT3_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens NCTC 8239 GN=AC7_0235 PE=4
           SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIEDEYL 255


>tr|B1RHE7|B1RHE7_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens CPE str. F4969 GN=AC5_0263
           PE=4 SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIEDEYL 255


>tr|B1R8B2|B1R8B2_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens B str. ATCC 3626 GN=AC1_0226
           PE=4 SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIEDEYL 255


>tr|B1BUE8|B1BUE8_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens E str. JGS1987 GN=AC3_0332
           PE=4 SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIEDEYL 255


>tr|B1BH55|B1BH55_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens C str. JGS1495 GN=CPC_0230
           PE=4 SV=1
          Length = 256

 Score = 35.4 bits (80), Expect = 2.4
 Identities = 14/42 (33%), Positives = 27/42 (64%)
 Frame = +3

Query: 111 LLFNVSEVPFLQFYLSNKDLSSLHKNVISTFSLSKYLPTQKL 236
           L FN+     L+FY++NKD+   + N++S ++L+ Y+  + L
Sbjct: 214 LNFNIISKENLEFYMNNKDVLDSNNNILSNYNLTNYIKDEYL 255


>tr|Q3Y0C3|Q3Y0C3_ENTFC Amino acid permease-associated region
           (Fragment) OS=Enterococcus faecium DO GN=EfaeDRAFT_1171
           PE=4 SV=1
          Length = 409

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
 Frame = -2

Query: 425 IFCCSESRTKVSGFTYCLRYF*--RVFGFIAPT-P*TCGVNWVCHVIIRSSFILAAKEGL 255
           +FC     T V      L YF   ++FG++A +   T  + W+  +I  +SF+LA ++G 
Sbjct: 301 LFC-----TSVLYLGVALSYFVGDKLFGYLAGSLSYTVLLIWI--IISAASFVLALRKGT 353

Query: 254 LWQHGLQFLCWKVLG 210
           LW  G+ F    VLG
Sbjct: 354 LWDKGISFFALAVLG 368