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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914083
Clone id YMU001_000039_F08
Library
Length 604
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCTGAATAAGTAGACCCTTTTTCTTCTTAACCGTAACAAAGTGTTAGCTGTCCACTTAA
ATTACATTCATGTGTAACTGGCCTCCATAATGATTTTTACAATTGGATTTTCCAAGGTCT
GGTCTTTCCAAAATGGGCACTATTTTGACACAACCCATGGAAACCCCAACATCAAGGTTC
TGCAATAGCACAAATATGTTGGTATGCTTATCTGCAGAAAGGTAAAACCTTTAGCACAAA
CAGTAGCTCTCGATTGCAGGTTTATGAACAGCCCCCAACACTCTTTATCAGTTGCTAAAA
TGTCCCAACACATAAAGCCGAAATGGGGGTCCACTACATGTCAATGTCTGAGTGCCATCC
GAAGATGGTAGTTTGAATGGAGAGCCAAGAAGTTCAGTTTTTGGGTGTATTACAGCAGCC
CCGAGAAGAGTGTATTCGCCTGGTACCAAAAAACAGAGAGCAAAAGTATGAACTATCTTT
CCCAATGGAGGGATCTCTACTTCCACTCCGTTTAAAGCACCAGCCCATAGCACAGTTGCT
TTCTCTCCTCCTAAACAGCTCTCTCCTGCAACATCCCGGCACGTCACACTGAAGCTAAGG
GTTA
■■Homology search results ■■ -
sp_hit_id A4VPB6
Definition sp|A4VPB6|MURI_PSEU5 Glutamate racemase OS=Pseudomonas stutzeri (strain A1501)
Align length 47
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914083|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_F08.
         (604 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4VPB6|MURI_PSEU5 Glutamate racemase OS=Pseudomonas stutzeri ...    32   1.9  
sp|Q1QIM4|HIS1_NITHX ATP phosphoribosyltransferase OS=Nitrobacte...    32   2.5  
sp|Q20X96|HIS1_RHOPB ATP phosphoribosyltransferase OS=Rhodopseud...    30   7.2  
sp|P60806|HIS1_RHOPA ATP phosphoribosyltransferase OS=Rhodopseud...    30   9.4  

>sp|A4VPB6|MURI_PSEU5 Glutamate racemase OS=Pseudomonas stutzeri
           (strain A1501) GN=murI PE=3 SV=1
          Length = 264

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -3

Query: 449 LVPGEYTLL--GAAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRL 315
           L+P +  L+  GAAV     E+L     L S D TQ   CSG P R+
Sbjct: 199 LLPNDIRLIDTGAAVARHLREMLAERHLLASGDATQRFYCSGDPQRM 245


>sp|Q1QIM4|HIS1_NITHX ATP phosphoribosyltransferase OS=Nitrobacter
           hamburgensis (strain X14 / DSM 10229) GN=hisG PE=3 SV=1
          Length = 325

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 17/29 (58%), Positives = 18/29 (62%)
 Frame = -3

Query: 383 SPFKLPSSDGTQTLTCSGPPFRLYVLGHF 297
           SPF  P+S G  TL C  PP RLY LG F
Sbjct: 265 SPFGGPTSSGMVTLHC--PPDRLYALGSF 291


>sp|Q20X96|HIS1_RHOPB ATP phosphoribosyltransferase
           OS=Rhodopseudomonas palustris (strain BisB18) GN=hisG
           PE=3 SV=1
          Length = 325

 Score = 30.4 bits (67), Expect = 7.2
 Identities = 16/29 (55%), Positives = 18/29 (62%)
 Frame = -3

Query: 383 SPFKLPSSDGTQTLTCSGPPFRLYVLGHF 297
           SPF  P+S G  TL C  PP +LY LG F
Sbjct: 265 SPFGGPTSSGMITLHC--PPAQLYALGSF 291


>sp|P60806|HIS1_RHOPA ATP phosphoribosyltransferase
           OS=Rhodopseudomonas palustris GN=hisG PE=3 SV=1
          Length = 325

 Score = 30.0 bits (66), Expect = 9.4
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -3

Query: 383 SPFKLPSSDGTQTLTCSGPPFRLYVLGHF 297
           SPF  P+S G  TL C  PP ++Y LG F
Sbjct: 265 SPFGGPTSSGMLTLHC--PPAQIYALGSF 291
tr_hit_id A7P5Z9
Definition tr|A7P5Z9|A7P5Z9_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera
Align length 99
Score (bit) 108.0
E-value 2.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914083|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_F08.
         (604 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P5Z9|A7P5Z9_VITVI Chromosome chr4 scaffold_6, whole genome ...   108   2e-22
tr|A9TGF2|A9TGF2_PHYPA Predicted protein OS=Physcomitrella paten...   100   5e-20
tr|A9T6P1|A9T6P1_PHYPA Predicted protein OS=Physcomitrella paten...    99   1e-19
tr|Q9FY61|Q9FY61_ARATH Putative uncharacterized protein T5K6_30 ...    99   2e-19
tr|Q0JBY9|Q0JBY9_ORYSJ Os04g0502200 protein OS=Oryza sativa subs...    94   6e-18
tr|Q01I83|Q01I83_ORYSA H0311C03.11 protein OS=Oryza sativa GN=H0...    94   6e-18
tr|B8ARB3|B8ARB3_ORYSI Putative uncharacterized protein OS=Oryza...    94   6e-18
tr|Q4JF22|Q4JF22_ORYSA OSJNBa0029H02.30 protein OS=Oryza sativa ...    49   2e-04
tr|A3AVB7|A3AVB7_ORYSJ Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|B4NDF0|B4NDF0_DROWI GK10223 OS=Drosophila willistoni GN=GK102...    39   0.24 
tr|A4HG42|A4HG42_LEIBR Putative uncharacterized protein (Fragmen...    39   0.24 
tr|Q6FA62|Q6FA62_ACIAD Putative transport protein (ABC superfami...    33   9.9  
tr|Q1MS76|Q1MS76_LAWIP Putative uncharacterized protein LI0093 O...    33   9.9  
tr|B5I3P9|B5I3P9_9ACTO Serine/threonine protein kinase OS=Strept...    33   9.9  
tr|A8EKW1|A8EKW1_BURPS Penicillin-binding protein 1C OS=Burkhold...    33   9.9  

>tr|A7P5Z9|A7P5Z9_VITVI Chromosome chr4 scaffold_6, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00032727001
            PE=4 SV=1
          Length = 1128

 Score =  108 bits (270), Expect = 2e-22
 Identities = 51/99 (51%), Positives = 73/99 (73%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLGGEKATVLWAGALNGVEVEIPPLGKIVHTFALCFLVPGEYTLLG 420
            + FS+ CRDVAG +C+ G+KATVLWAG L+GV +E+PPL ++ H+F+L FLVPGEYTL+ 
Sbjct: 1030 MRFSIRCRDVAGANCVEGDKATVLWAGVLSGVTMEVPPLQEVKHSFSLYFLVPGEYTLVA 1089

Query: 419  AAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRLYVLG 303
            AAVI    ++L +  +  SS+  + + C GPPF + V+G
Sbjct: 1090 AAVIDDPNDILRARARSVSSN--EPIFCRGPPFHVRVIG 1126


>tr|A9TGF2|A9TGF2_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_194847 PE=4 SV=1
          Length = 1123

 Score =  100 bits (250), Expect = 5e-20
 Identities = 53/100 (53%), Positives = 68/100 (68%), Gaps = 2/100 (2%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLG--GEKATVLWAGALNGVEVEIPPLGKIVHTFALCFLVPGEYTL 426
            ++ SVTCRDV G SCLG  G KATVLWAG L+ V VE+  LG++VH F+LCFLVPG+YTL
Sbjct: 1034 MTLSVTCRDVTGTSCLGAAGTKATVLWAGTLDRVNVEVGALGEVVHRFSLCFLVPGQYTL 1093

Query: 425  LGAAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRLYVL 306
            LG+AVI+             S  G + L+ +GPPF + V+
Sbjct: 1094 LGSAVIN-------------SQPGHEALSYTGPPFAVDVV 1120


>tr|A9T6P1|A9T6P1_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_141132 PE=4 SV=1
          Length = 1118

 Score = 99.4 bits (246), Expect = 1e-19
 Identities = 52/100 (52%), Positives = 67/100 (67%), Gaps = 2/100 (2%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLG--GEKATVLWAGALNGVEVEIPPLGKIVHTFALCFLVPGEYTL 426
            ++ SVTCRDV G SC+   G KATVLWAG L+GV+VE+  LG+ VH FALCFLVPG+YTL
Sbjct: 1029 MTLSVTCRDVTGTSCMSAAGAKATVLWAGTLDGVDVEVGALGEAVHRFALCFLVPGQYTL 1088

Query: 425  LGAAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRLYVL 306
            LG+AVI              S    + L+ +GPPF ++V+
Sbjct: 1089 LGSAVI-------------DSQPTHEALSYTGPPFAVHVV 1115


>tr|Q9FY61|Q9FY61_ARATH Putative uncharacterized protein T5K6_30
            OS=Arabidopsis thaliana GN=T5K6_30 PE=4 SV=1
          Length = 1186

 Score = 99.0 bits (245), Expect = 2e-19
 Identities = 48/99 (48%), Positives = 67/99 (67%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLGGEKATVLWAGALNGVEVEIPPLGKIVHTFALCFLVPGEYTLLG 420
            L+ SVTCRDVAG++C  G  ATVLWAGAL+G+ +E+ PL +  H F+L FLVPGEYT++ 
Sbjct: 1087 LNLSVTCRDVAGQNCTEGADATVLWAGALSGISMEVAPLQEARHCFSLFFLVPGEYTMVA 1146

Query: 419  AAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRLYVLG 303
            AAVI     +L +  +  ++   + + C GPPF + V G
Sbjct: 1147 AAVIEDANNVLRA--RAGTASPNEPIFCRGPPFHVCVAG 1183


>tr|Q0JBY9|Q0JBY9_ORYSJ Os04g0502200 protein OS=Oryza sativa subsp.
            japonica GN=Os04g0502200 PE=4 SV=1
          Length = 1187

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 43/99 (43%), Positives = 68/99 (68%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLGGEKATVLWAGALNGVEVEIPPLGKIVHTFALCFLVPGEYTLLG 420
            ++ S++C+DVAGE+C     ATVLWAG L+ + +E+ PL ++VH F++ FLVPG+Y+L  
Sbjct: 1089 MNLSISCKDVAGENCFDENSATVLWAGVLSDIYLEVQPLQEVVHPFSIYFLVPGDYSLQA 1148

Query: 419  AAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRLYVLG 303
            A+VI   T++L +  K  S D  + + C G PF ++V+G
Sbjct: 1149 ASVIIDATDVLRARAKAESPD--EPILCRGSPFHIHVVG 1185


>tr|Q01I83|Q01I83_ORYSA H0311C03.11 protein OS=Oryza sativa
            GN=H0311C03.11 PE=4 SV=1
          Length = 1187

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 43/99 (43%), Positives = 68/99 (68%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLGGEKATVLWAGALNGVEVEIPPLGKIVHTFALCFLVPGEYTLLG 420
            ++ S++C+DVAGE+C     ATVLWAG L+ + +E+ PL ++VH F++ FLVPG+Y+L  
Sbjct: 1089 MNLSISCKDVAGENCFDENSATVLWAGVLSDIYLEVQPLQEVVHPFSIYFLVPGDYSLQA 1148

Query: 419  AAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRLYVLG 303
            A+VI   T++L +  K  S D  + + C G PF ++V+G
Sbjct: 1149 ASVIIDATDVLRARAKAESPD--EPILCRGSPFHIHVVG 1185


>tr|B8ARB3|B8ARB3_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_16530 PE=4 SV=1
          Length = 1167

 Score = 94.0 bits (232), Expect = 6e-18
 Identities = 43/99 (43%), Positives = 68/99 (68%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLGGEKATVLWAGALNGVEVEIPPLGKIVHTFALCFLVPGEYTLLG 420
            ++ S++C+DVAGE+C     ATVLWAG L+ + +E+ PL ++VH F++ FLVPG+Y+L  
Sbjct: 1069 MNLSISCKDVAGENCFDENSATVLWAGVLSDIYLEVQPLQEVVHPFSIYFLVPGDYSLQA 1128

Query: 419  AAVIHPKTELLGSPFKLPSSDGTQTLTCSGPPFRLYVLG 303
            A+VI   T++L +  K  S D  + + C G PF ++V+G
Sbjct: 1129 ASVIIDATDVLRARAKAESPD--EPILCRGSPFHIHVVG 1165


>tr|Q4JF22|Q4JF22_ORYSA OSJNBa0029H02.30 protein OS=Oryza sativa
            GN=OSJNBa0029H02.30 PE=4 SV=1
          Length = 1193

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLGGEKATVLWAGALNGVEVEIPPL 483
            ++ S++C+DVAGE+C     ATVLWAG L+ + +E+ PL
Sbjct: 1069 MNLSISCKDVAGENCFDENSATVLWAGVLSDIYLEVQPL 1107


>tr|A3AVB7|A3AVB7_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_014739 PE=4 SV=1
          Length = 1194

 Score = 49.3 bits (116), Expect = 2e-04
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = -3

Query: 599  LSFSVTCRDVAGESCLGGEKATVLWAGALNGVEVEIPPL 483
            ++ S++C+DVAGE+C     ATVLWAG L+ + +E+ PL
Sbjct: 1070 MNLSISCKDVAGENCFDENSATVLWAGVLSDIYLEVQPL 1108


>tr|B4NDF0|B4NDF0_DROWI GK10223 OS=Drosophila willistoni GN=GK10223
           PE=4 SV=1
          Length = 663

 Score = 38.9 bits (89), Expect = 0.24
 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 12/86 (13%)
 Frame = -2

Query: 585 DVPGCCRRELFRRRESNCAMGW-----CFKR---SGSRDP----SIGKDSSYFCSLFFGT 442
           +V  C + ++F    S C   W     CF+R   SGS+      + GK S+ F  +FF T
Sbjct: 431 EVAFCFKEDMFVPI-SRCLPAWFRFAQCFRRFRDSGSKSVDYLINAGKYSTTFFVVFFST 489

Query: 441 RRIHSSRGCCNTPKN*TSWLSIQTTI 364
            R+H+  G  NT +N  +WL I + I
Sbjct: 490 MRMHTESGYSNTFRNPYTWLFIASYI 515