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NBDC - LSDB Archive
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BP914085
Clone id YMU001_000039_F10
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGTCGGCGGGGACAGGCAGGGATATAGCTCATGGGTTTGTAGTGGACAAACGTATGTTAG
CCAAAATTAGCCCACTCCAAGTTACATTACTTTGTGATGTTATGTCATGTTGATTTTGAA
TCGGACCCAATGTTCGCATGGTATTCAAAGTGCTTGCATGCAGAACAGAATATATCCGCT
CATCATGACTTCCCACAAGCACATCCTCAAGCTTTACGGTCTCGACCCTACAGATATTAG
AATCCCTACTTTCCATCACTTGCAAATTCTCTGTTACCCTCCTTCCTAACAAGTGTGGGC
TCTTCTGTACAAGATAACTGAGTAGCGCACGGTCCGGGAAGGAAAGCTTGTTTTTCCTTT
GCAGAGCAACTCTCACAATCTCAACTACCATTGAGCTTGCAATACCCTTAGCAGATCTCA
TGGAGCCCAATATTACTCTACTGCTTATTACGCTCCTCTGCTTGTCTACTTGCTCTAAGC
TATTCCATACTTCCCTTCCATAAACTGTCTCCATTAAACCCTGCTTCGCACTTGAAAGCT
CGCTTCTTGCT
■■Homology search results ■■ -
sp_hit_id Q7NNG8
Definition sp|Q7NNG8|GLMU_GLOVI Bifunctional protein glmU OS=Gloeobacter violaceus
Align length 122
Score (bit) 34.7
E-value 0.32
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914085|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_F10.
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7NNG8|GLMU_GLOVI Bifunctional protein glmU OS=Gloeobacter vi...    35   0.32 
sp|Q89A21|REP_BUCBP ATP-dependent DNA helicase rep OS=Buchnera a...    33   0.92 
sp|A2AJQ3|D19L4_MOUSE Protein dpy-19 homolog 4 OS=Mus musculus G...    32   2.7  
sp|Q9KGL2|Y049_BACHD UPF0011 protein BH0049 OS=Bacillus halodura...    30   6.0  
sp|Q9ZEA5|RS18_RICPR 30S ribosomal protein S18 OS=Rickettsia pro...    30   6.0  
sp|Q8NNB9|ERA_CORGL GTP-binding protein era homolog OS=Corynebac...    30   6.0  
sp|Q7Z388|D19L4_HUMAN Protein dpy-19 homolog 4 OS=Homo sapiens G...    30   7.8  

>sp|Q7NNG8|GLMU_GLOVI Bifunctional protein glmU OS=Gloeobacter
           violaceus GN=glmU PE=3 SV=1
          Length = 456

 Score = 34.7 bits (78), Expect = 0.32
 Identities = 32/122 (26%), Positives = 57/122 (46%), Gaps = 1/122 (0%)
 Frame = -2

Query: 484 NSLEQVDKQRSVISSRVILGSMRSAKGIASSMVVEIVRVALQRKNKLSFPDRALLSYLVQ 305
           N   Q+ +   +++ R ++G M S  G+    +V+ +RV +    ++  PD      +++
Sbjct: 226 NDRLQLSQASRILNERTLVGLMLS--GVT---IVDPLRVTIDETVEIE-PD-----VVIE 274

Query: 304 KSPHLLGRRVTENLQVMESRDSNICRVET-VKLEDVLVGSHDERIYSVLHASTLNTMRTL 128
              HL G           +R +  CR+     LED +VG+  E +YSVL  S +    T+
Sbjct: 275 PETHLRGA----------TRIAGGCRIGPGTLLEDTVVGAGTEILYSVLRRSRVGAHSTI 324

Query: 127 GP 122
           GP
Sbjct: 325 GP 326


>sp|Q89A21|REP_BUCBP ATP-dependent DNA helicase rep OS=Buchnera
           aphidicola subsp. Baizongia pistaciae GN=rep PE=3 SV=1
          Length = 670

 Score = 33.1 bits (74), Expect = 0.92
 Identities = 31/116 (26%), Positives = 47/116 (40%), Gaps = 9/116 (7%)
 Frame = -2

Query: 382 EIVRVALQRKNKLSFPDRALLSYLVQKSPHLLGRRVTENLQVM---ESRDSNICRVETVK 212
           E+    L+  N L F D   L  ++ +   L   R  + ++ +   E +D+N  + + +K
Sbjct: 166 ELYNAYLKSSNILDFDDLIFLPTILLRDNKLSRERWNDKIKYLLVDEYQDTNFIQYKLIK 225

Query: 211 LED------VLVGSHDERIYSVLHASTLNTMRTLGPIQNQHDITSQSNVTWSGLIL 62
           L         LVG  D+ IYS   A+  N         N   I  Q N   SG IL
Sbjct: 226 LLSSKRSNFTLVGDDDQSIYSWRGANIHNFESLKHDYPNLRTIIMQHNYRSSGRIL 281


>sp|A2AJQ3|D19L4_MOUSE Protein dpy-19 homolog 4 OS=Mus musculus
           GN=Dpy19l4 PE=2 SV=1
          Length = 722

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = -2

Query: 262 QVMESRDSNICRVETVKLEDVLVGSHDERIYSVLHASTLNTMRTL 128
           QV   R S   + ETV LED  +G   E IY V+H   L ++  L
Sbjct: 437 QVFFRRMSGKSKKETVTLEDGRIGERPEIIYHVIHTLLLGSLAML 481


>sp|Q9KGL2|Y049_BACHD UPF0011 protein BH0049 OS=Bacillus halodurans
           GN=BH0049 PE=3 SV=1
          Length = 289

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = -2

Query: 361 QRKNKLSFPDRALLSYLVQKSPHLLGRRVTENLQVMESRDSNICRVETVKLEDVLVGSHD 182
           QR+  L        + +  +SPH L   + + L ++ +R  +ICR  T   E+ L G+ +
Sbjct: 153 QRRQALEETKPTKATLIFYESPHRLKDTLDDMLLILGNRHVSICRELTKTYEEFLRGTLE 212

Query: 181 ERIY 170
           E ++
Sbjct: 213 EAVH 216


>sp|Q9ZEA5|RS18_RICPR 30S ribosomal protein S18 OS=Rickettsia
           prowazekii GN=rpsR PE=3 SV=1
          Length = 95

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 3/82 (3%)
 Frame = -2

Query: 433 ILGSMRSAKGIASSMVVEIVRVALQRKNK---LSFPDRALLSYLVQKSPHLLGRRVTENL 263
           +L S  +++   S  V +  +    R+ K   LS P+  ++ Y   K+P LL + V+E  
Sbjct: 1   MLKSNNASETATSKGVDKAAKKVFFRRRKGCPLSVPNAPVIDY---KNPELLIKFVSEGG 57

Query: 262 QVMESRDSNICRVETVKLEDVL 197
           +++ SR +N+C  +  KL + +
Sbjct: 58  RMLPSRITNVCAKKQRKLNNAI 79


>sp|Q8NNB9|ERA_CORGL GTP-binding protein era homolog
           OS=Corynebacterium glutamicum GN=era PE=3 SV=1
          Length = 305

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 4/72 (5%)
 Frame = -2

Query: 328 ALLSYLVQKSPHLLGRRVTENLQVMESRD----SNICRVETVKLEDVLVGSHDERIYSVL 161
           A LS L  + PH +   V E L   E         I  VE V  +D++VG   +R+  ++
Sbjct: 207 AALSGLKNELPHSVAVEVDEILPDPERNGVLAVHAIIYVERVGQKDIIVGHKGQRLGRII 266

Query: 160 HASTLNTMRTLG 125
           H S  + ++ LG
Sbjct: 267 HTSRQDIIKILG 278


>sp|Q7Z388|D19L4_HUMAN Protein dpy-19 homolog 4 OS=Homo sapiens
           GN=DPY19L4 PE=2 SV=1
          Length = 723

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -2

Query: 265 LQVMESRDSNICRVETVKLEDVLVGSHDERIYSVLHASTLNTM 137
           LQV+  R +     ETV LED  +G   E IY V+H   L ++
Sbjct: 437 LQVIFRRINGKSLKETVTLEDGRIGERPEIIYHVIHTILLGSL 479
tr_hit_id A9SME5
Definition tr|A9SME5|A9SME5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 99
Score (bit) 89.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914085|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_F10.
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SME5|A9SME5_PHYPA Predicted protein OS=Physcomitrella paten...    89   2e-16
tr|A9RR70|A9RR70_PHYPA Predicted protein OS=Physcomitrella paten...    82   2e-14
tr|A9T884|A9T884_PHYPA Predicted protein OS=Physcomitrella paten...    70   7e-11
tr|A9T8M9|A9T8M9_PHYPA Predicted protein (Fragment) OS=Physcomit...    50   1e-04
tr|A7PWH0|A7PWH0_VITVI Chromosome chr8 scaffold_34, whole genome...    47   7e-04
tr|A9QZ33|A9QZ33_YERPG Putative uncharacterized protein OS=Yersi...    36   1.5  
tr|Q7CI90|Q7CI90_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|Q66AZ3|Q66AZ3_YERPS Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|Q1CJM5|Q1CJM5_YERPN Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|Q1C878|Q1C878_YERPA Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|B2K2X1|B2K2X1_YERPB Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|B1JMA4|B1JMA4_YERPY Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|A7FII6|A7FII6_YERP3 Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|A4TJR4|A4TJR4_YERPP Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|B0HSD3|B0HSD3_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|B0HCR2|B0HCR2_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|B0H512|B0H512_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|B0GRY7|B0GRY7_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|B0GJM1|B0GJM1_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|A9ZZZ8|A9ZZZ8_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|A9ZBE9|A9ZBE9_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|A6BR19|A6BR19_YERPE Putative uncharacterized protein OS=Yersi...    35   2.6  
tr|Q4N1P8|Q4N1P8_THEPA Membrane-associated calcium-binding prote...    35   2.6  
tr|A5FB53|A5FB53_FLAJ1 Sensor protein OS=Flavobacterium johnsoni...    34   4.5  
tr|Q9M2K7|Q9M2K7_ARATH Putative uncharacterized protein F28O9.25...    34   4.5  
tr|Q8W4L8|Q8W4L8_ARATH Putative uncharacterized protein At3g5740...    34   4.5  
tr|Q9FYR8|Q9FYR8_ARATH Emb|CAB68146.1 (Putative uncharacterized ...    34   5.9  
tr|A9TIZ3|A9TIZ3_PHYPA Predicted protein OS=Physcomitrella paten...    34   5.9  
tr|Q176S2|Q176S2_AEDAE Putative uncharacterized protein OS=Aedes...    34   5.9  
tr|B5SJZ1|B5SJZ1_RALSO Atp-dependent dna helicase-related protei...    33   10.0 

>tr|A9SME5|A9SME5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165707 PE=4 SV=1
          Length = 598

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 46/99 (46%), Positives = 71/99 (71%)
 Frame = -2

Query: 544 SELSSAKQGLMETVYGREVWNSLEQVDKQRSVISSRVILGSMRSAKGIASSMVVEIVRVA 365
           S  ++A  G++E+VYG++ WNSLE+ D+ R VIS+ +I+G +R  + +A +M  EIVRVA
Sbjct: 418 SSEANATTGVIESVYGKKFWNSLEEEDRARKVISTGLIVGGIRPVRSVAMAMATEIVRVA 477

Query: 364 LQRKNKLSFPDRALLSYLVQKSPHLLGRRVTENLQVMES 248
           L RK + +F   A+LS+LV KS  +LG++V  +LQV +S
Sbjct: 478 LLRKTRDAFNPEAVLSFLVHKS-SVLGKKVASHLQVHDS 515


>tr|A9RR70|A9RR70_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160579 PE=4 SV=1
          Length = 681

 Score = 82.0 bits (201), Expect = 2e-14
 Identities = 37/97 (38%), Positives = 71/97 (73%)
 Frame = -2

Query: 523 QGLMETVYGREVWNSLEQVDKQRSVISSRVILGSMRSAKGIASSMVVEIVRVALQRKNKL 344
           +GL+ ++YG  +W SL++  ++R VISS  ++G +   + +A+ M  EIVR+AL++KN+ 
Sbjct: 488 KGLIPSLYGSVLWRSLDKAHRERVVISSGFVMGKIEYVRKLANKMTTEIVRIALEKKNRR 547

Query: 343 SFPDRALLSYLVQKSPHLLGRRVTENLQVMESRDSNI 233
            F D+A+++YLV +S  +LG+RV ++L+++ +R+S +
Sbjct: 548 PFHDKAVINYLVHQS-SVLGKRVLDHLKIVPNRNSAV 583


>tr|A9T884|A9T884_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168589 PE=4 SV=1
          Length = 584

 Score = 70.1 bits (170), Expect = 7e-11
 Identities = 32/94 (34%), Positives = 66/94 (70%)
 Frame = -2

Query: 520 GLMETVYGREVWNSLEQVDKQRSVISSRVILGSMRSAKGIASSMVVEIVRVALQRKNKLS 341
           GL+++VYG  +W++L++ +KQ +V+S+ VI+G +   +G+A  M  EIVR+A++ K++  
Sbjct: 438 GLIQSVYGTLMWSNLDESNKQFAVVSAAVIMGEVHYVRGLAMKMTSEIVRMAIEHKSRRL 497

Query: 340 FPDRALLSYLVQKSPHLLGRRVTENLQVMESRDS 239
           F D+A+L+  V     ++ ++  E+++V+ ++DS
Sbjct: 498 FHDKAVLNMWVHNKATIV-KKFAEHMKVVRNKDS 530


>tr|A9T8M9|A9T8M9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_4931 PE=4 SV=1
          Length = 268

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 26/52 (50%), Positives = 34/52 (65%)
 Frame = -2

Query: 463 KQRSVISSRVILGSMRSAKGIASSMVVEIVRVALQRKNKLSFPDRALLSYLV 308
           K  S I + VILG MR  + + ++M  EIVRVAL RKN++ F    +LSYLV
Sbjct: 217 KSWSFIDTGVILGGMRPVRSLTTAMATEIVRVALLRKNRMPFNVEIVLSYLV 268


>tr|A7PWH0|A7PWH0_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025609001
           PE=4 SV=1
          Length = 511

 Score = 47.0 bits (110), Expect = 7e-04
 Identities = 25/80 (31%), Positives = 46/80 (57%)
 Frame = -2

Query: 475 EQVDKQRSVISSRVILGSMRSAKGIASSMVVEIVRVALQRKNKLSFPDRALLSYLVQKSP 296
           ++    + +++S +I+G  R  + ++++M++EIVR A+QRK K  F +  LL+ LV  S 
Sbjct: 383 DKTQNHQKLVNSEIIMGGTRGVRRLSNAMLIEIVRAAMQRKGKSPFSESVLLNQLV--SN 440

Query: 295 HLLGRRVTENLQVMESRDSN 236
            +L + V   +      DSN
Sbjct: 441 GVLSKGVDLTISNESVPDSN 460


>tr|A9QZ33|A9QZ33_YERPG Putative uncharacterized protein OS=Yersinia
           pestis bv. Antiqua (strain Angola) GN=YpAngola_A2486
           PE=4 SV=1
          Length = 310

 Score = 35.8 bits (81), Expect = 1.5
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
 Frame = -2

Query: 541 ELSSAKQGLMETVYGREVWNSLEQVDKQRSVISSRVILGSMRSAKG---IASSMVVEIVR 371
           ++ S  +G  +  +G+  +NS+E++  QRS+ S+    G+MRS K    IA +   + VR
Sbjct: 206 DIESTDEG-SDLCWGKPHFNSIEKIASQRSIFSALSTHGNMRSKKAIEKIAHNHKADEVR 264

Query: 370 VALQRKNKLSFPDRALLSYLVQKSPHLLGRRVTENLQVMESRDSN 236
            AL     L   D  L   L  +  H + RRV   + + +   SN
Sbjct: 265 -ALSWVAMLRANDTVLSDVLTLEKSHYV-RRVLAEINMAQGETSN 307


>tr|Q7CI90|Q7CI90_YERPE Putative uncharacterized protein OS=Yersinia
           pestis GN=YPO1995 PE=4 SV=1
          Length = 310

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 502 YGREVWNSLEQVDKQRSVISSRVILGSMRSAKG---IASSMVVEIVRVALQRKNKLSFPD 332
           +G+  +NS+E++  QRS+ S+    G+MRS K    IA +   + VR AL     L   D
Sbjct: 218 WGKPHFNSIEKIASQRSIFSALSTHGNMRSKKAIEKIAHNHKADEVR-ALSWVAMLRAND 276

Query: 331 RALLSYLVQKSPHLLGRRVTENLQVMESRDSN 236
             L   L  +  H + RRV   + + +   SN
Sbjct: 277 TVLSDVLTLEKSHYV-RRVLAEINMAQGETSN 307


>tr|Q66AZ3|Q66AZ3_YERPS Putative uncharacterized protein OS=Yersinia
           pseudotuberculosis GN=YPTB1987 PE=4 SV=1
          Length = 310

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 502 YGREVWNSLEQVDKQRSVISSRVILGSMRSAKG---IASSMVVEIVRVALQRKNKLSFPD 332
           +G+  +NS+E++  QRS+ S+    G+MRS K    IA +   + VR AL     L   D
Sbjct: 218 WGKPHFNSIEKIASQRSIFSALSTHGNMRSKKAIEKIAHNHKADEVR-ALSWVAMLRAND 276

Query: 331 RALLSYLVQKSPHLLGRRVTENLQVMESRDSN 236
             L   L  +  H + RRV   + + +   SN
Sbjct: 277 TVLSDVLTLEKSHYV-RRVLAEINMAQGETSN 307


>tr|Q1CJM5|Q1CJM5_YERPN Putative uncharacterized protein OS=Yersinia
           pestis bv. Antiqua (strain Nepal516) GN=YPN_1475 PE=4
           SV=1
          Length = 310

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 502 YGREVWNSLEQVDKQRSVISSRVILGSMRSAKG---IASSMVVEIVRVALQRKNKLSFPD 332
           +G+  +NS+E++  QRS+ S+    G+MRS K    IA +   + VR AL     L   D
Sbjct: 218 WGKPHFNSIEKIASQRSIFSALSTHGNMRSKKAIEKIAHNHKADEVR-ALSWVAMLRAND 276

Query: 331 RALLSYLVQKSPHLLGRRVTENLQVMESRDSN 236
             L   L  +  H + RRV   + + +   SN
Sbjct: 277 TVLSDVLTLEKSHYV-RRVLAEINMAQGETSN 307


>tr|Q1C878|Q1C878_YERPA Putative uncharacterized protein OS=Yersinia
           pestis bv. Antiqua (strain Antiqua) GN=YPA_1377 PE=4
           SV=1
          Length = 310

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 29/92 (31%), Positives = 45/92 (48%), Gaps = 3/92 (3%)
 Frame = -2

Query: 502 YGREVWNSLEQVDKQRSVISSRVILGSMRSAKG---IASSMVVEIVRVALQRKNKLSFPD 332
           +G+  +NS+E++  QRS+ S+    G+MRS K    IA +   + VR AL     L   D
Sbjct: 218 WGKPHFNSIEKIASQRSIFSALSTHGNMRSKKAIEKIAHNHKADEVR-ALSWVAMLRAND 276

Query: 331 RALLSYLVQKSPHLLGRRVTENLQVMESRDSN 236
             L   L  +  H + RRV   + + +   SN
Sbjct: 277 TVLSDVLTLEKSHYV-RRVLAEINMAQGETSN 307