BP914088
Clone id YMU001_000039_G02
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACGAGCAACACTAGGCCTCAGTCTTCTTGAAGGTCCAACTCTTTCAGTTCTTCCTCAACA
ACCTCGTCCATCTGCAACATTTGACAAGCCATTCCCTGGTGTCAGCCGAACGACCTCTAT
GCTATCCAAGATTGATGGGGCCTTCTTGGAAGAAATAGCTGATTTGCAGCAGCTCAAAAG
TCCCAGAGCAAGTCTTGTCCAAAATTGAGAAGCATACAGCAGAAACCATACTAAAGAACA
CCTTTCAACACTCGTCCATCTGCAACATTTGACAATCCATTCCCTGGTGTCAGCCGAACG
ACCTCTATGCTATCCAAGATTGATGGGGCCTTCTTGGAAGAAATAGCTGATTTGCAGCAG
CTCAAAAGTCCCAGAGCAAGTCTTGTCCAAAATTGAGAAGCATACAGCAGAAACCATACT
AAAGAACACCTTTCAACAAGTTTCCCTGTACGATATGCTCAAGCTGGATGCAAACCTTTG
AAGAGACACTCTCACAGTCATTCAATCTCTGTACCCCGGTGCAGGGTCTTGTGGCGGGCA
CCTACCAATGCAACTTCTGAGTCTTATATGATTTCATATCCCTCTGCCCCTCTCGATGA
■■Homology search results ■■ -
sp_hit_id P53995
Definition sp|P53995|APC1_MOUSE Anaphase-promoting complex subunit 1 OS=Mus musculus
Align length 91
Score (bit) 36.2
E-value 0.13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914088|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_G02.
(599 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P53995|APC1_MOUSE Anaphase-promoting complex subunit 1 OS=Mus... 36 0.13
sp|Q80Z38|SHAN2_MOUSE SH3 and multiple ankyrin repeat domains pr... 29 0.56
sp|Q3UVV9|VWA3A_MOUSE von Willebrand factor A domain-containing ... 34 0.65
sp|A6NCI4|VWA3A_HUMAN von Willebrand factor A domain-containing ... 34 0.65
sp|A1A5Q7|VWA3A_RAT von Willebrand factor A domain-containing pr... 32 1.9
sp|Q8YTE6|ILVD_ANASP Dihydroxy-acid dehydratase OS=Anabaena sp. ... 31 4.2
sp|Q2YC67|ILVD_NITMU Dihydroxy-acid dehydratase OS=Nitrosospira ... 31 5.5
sp|O62488|SRE27_CAEEL Serpentine receptor class epsilon-27 OS=Ca... 30 9.3

>sp|P53995|APC1_MOUSE Anaphase-promoting complex subunit 1 OS=Mus
musculus GN=Anapc1 PE=2 SV=1
Length = 1944

Score = 36.2 bits (82), Expect = 0.13
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +2

Query: 26 LEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRASLVQN 205
L P+L++ PRPS P GV T LSK+ G+ ++E+ L + R S N
Sbjct: 514 LPAPSLTMSNMMPRPST----PLDGVG-TPKPLSKLLGS-MDEVVLLSPVPELRDSSKLN 567

Query: 206 *EAYSRNHTKEHLSTLVHLQHLTIHSLVSAE 298
Y+ + T + L T +H +H+ V+ E
Sbjct: 568 DSLYNEDCTFQQLGTYIHSVRDPVHNRVTLE 598


>sp|Q80Z38|SHAN2_MOUSE SH3 and multiple ankyrin repeat domains protein
2 OS=Mus musculus GN=Shank2 PE=1 SV=1
Length = 1476

Score = 28.9 bits (63), Expect(2) = 0.56
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +2

Query: 47 VLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRASLVQ 202
+LP P PSAT P P +S S+ S+ L + + +SP S++Q
Sbjct: 1346 ILPTPPPPSATAASPSPTLSDVFSLPSQSPAGDLFGLNPAGRSRSPSPSILQ 1397



Score = 23.5 bits (49), Expect(2) = 0.56
Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 14/62 (22%)
Frame = +1

Query: 211 SIQQKPY*RTPFNTRPSATFDNPFP---------GVSRTTSMLSKIDGAFL-----EEIA 348
SI Q+P PF T+P + P G + T M ++IDG+ L E++
Sbjct: 1394 SILQQPISNKPFTTKPVHLWTKPDVADWLESLNLGEHKETFMDNEIDGSHLPNLQKEDLI 1453

Query: 349 DL 354
DL
Sbjct: 1454 DL 1455


>sp|Q3UVV9|VWA3A_MOUSE von Willebrand factor A domain-containing
protein 3A OS=Mus musculus GN=Vwa3a PE=2 SV=1
Length = 1148

Score = 33.9 bits (76), Expect = 0.65
Identities = 17/60 (28%), Positives = 35/60 (58%)
Frame = +2

Query: 11 LGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRA 190
+ + + +GP S+LP+ P+ A FP + +T++ KI+G ++++ L Q+ +P A
Sbjct: 346 ISIEIAKGPFTSLLPKPPKHEAPLTIKFPDLDKTSAEWLKINGLKAKKLS-LYQVLAPNA 404


>sp|A6NCI4|VWA3A_HUMAN von Willebrand factor A domain-containing
protein 3A OS=Homo sapiens GN=VWA3A PE=2 SV=3
Length = 1184

Score = 33.9 bits (76), Expect = 0.65
Identities = 16/60 (26%), Positives = 34/60 (56%)
Frame = +2

Query: 11 LGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRA 190
+ + GP +S+LP+ P+ A FP + +T++ K++G ++++ L Q+ +P A
Sbjct: 373 ISTEITNGPLISLLPKPPKHDAPLTIEFPNLDKTSAEWLKVNGLKAKKLS-LYQVLAPNA 431


>sp|A1A5Q7|VWA3A_RAT von Willebrand factor A domain-containing
protein 3A OS=Rattus norvegicus GN=Vwa3a PE=2 SV=1
Length = 737

Score = 32.3 bits (72), Expect = 1.9
Identities = 17/60 (28%), Positives = 33/60 (55%)
Frame = +2

Query: 11 LGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRA 190
+ + +GP S+LP+ P+ A FP + +T++ KI+G +++ L Q+ +P A
Sbjct: 346 ISTEIAKGPFTSLLPKPPKHEAPLTIKFPDLDKTSAEWLKINGLKAKKLG-LYQVLAPNA 404


>sp|Q8YTE6|ILVD_ANASP Dihydroxy-acid dehydratase OS=Anabaena sp.
(strain PCC 7120) GN=ilvD PE=3 SV=1
Length = 563

Score = 31.2 bits (69), Expect = 4.2
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +2

Query: 425 NTFQQVSLYDMLKLDANL*RDTLTVIQSLYPGAGSCGG 538
++F+ V Y K+D N + L V ++ PGAGSCGG
Sbjct: 163 SSFEAVGEYSAGKIDEN---ELLAVERNACPGAGSCGG 197


>sp|Q2YC67|ILVD_NITMU Dihydroxy-acid dehydratase OS=Nitrosospira
multiformis (strain ATCC 25196 / NCIMB 11849) GN=ilvD
PE=3 SV=1
Length = 557

Score = 30.8 bits (68), Expect = 5.5
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2

Query: 425 NTFQQVSLYDMLKLDANL*RDTLTVIQSLYPGAGSCGGHLPMQLLS 562
+ F+ V Y K+DA ++ L V + PGAGSCGG +S
Sbjct: 163 SAFEAVGQYTSHKIDA---KELLEVERHACPGAGSCGGMFTANTMS 205


>sp|O62488|SRE27_CAEEL Serpentine receptor class epsilon-27
OS=Caenorhabditis elegans GN=sre-27 PE=2 SV=1
Length = 364

Score = 30.0 bits (66), Expect = 9.3
Identities = 28/94 (29%), Positives = 41/94 (43%), Gaps = 4/94 (4%)
Frame = -3

Query: 495 VRVSLQRFASSLSISYRETC*KVFFSMVSAVCFSILDKTCSGTFELLQISYFFQEGPINL 316
V V+++R A+S+ I E+ K+F + V F I+ TCS L + + F IN
Sbjct: 145 VAVAIERLAASVLIDNYESTNKIFIPIALTVFFQIIAITCS----CLALFHKFTIITIN- 199

Query: 315 G*HRGRSADTREWIVKCC----RWTSVERCSLVW 226
WIV C + VER +L W
Sbjct: 200 ----------GTWIVSCACSSIVFFLVERINLRW 223


tr_hit_id Q3TP10
Definition tr|Q3TP10|Q3TP10_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus
Align length 91
Score (bit) 36.2
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914088|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_G02.
(599 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3TP10|Q3TP10_MOUSE Putative uncharacterized protein (Fragmen... 36 1.5
tr|B7ZNX2|B7ZNX2_MOUSE Anaphase promoting complex subunit 1 OS=M... 36 1.5
tr|A2ATQ5|A2ATQ5_MOUSE Anaphase promoting complex subunit 1 OS=M... 36 1.5
tr|A2ATQ4|A2ATQ4_MOUSE Anaphase promoting complex subunit 1 OS=M... 36 1.5
tr|Q1BPB8|Q1BPB8_BURCA Outer membrane efflux protein OS=Burkhold... 35 2.5
tr|B1K9T8|B1K9T8_BURCC Outer membrane efflux protein OS=Burkhold... 35 2.5
tr|A0B1D0|A0B1D0_BURCH Outer membrane efflux protein OS=Burkhold... 35 2.5
tr|B4EMC8|B4EMC8_BURCJ Outer membrane efflux protein OS=Burkhold... 35 3.3
tr|Q398E3|Q398E3_BURS3 Outer membrane efflux protein OS=Burkhold... 35 4.3
tr|Q0V3S6|Q0V3S6_PHANO Putative uncharacterized protein OS=Phaeo... 34 5.6
tr|B4UA47|B4UA47_HYDS0 Diguanylate cyclase with PAS/PAC sensor O... 33 9.6

>tr|Q3TP10|Q3TP10_MOUSE Putative uncharacterized protein (Fragment)
OS=Mus musculus GN=Anapc1 PE=2 SV=1
Length = 693

Score = 36.2 bits (82), Expect = 1.5
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +2

Query: 26 LEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRASLVQN 205
L P+L++ PRPS P GV T LSK+ G+ ++E+ L + R S N
Sbjct: 514 LPAPSLTMSNMMPRPST----PLDGVG-TPKPLSKLLGS-MDEVVLLSPVPELRDSSKLN 567

Query: 206 *EAYSRNHTKEHLSTLVHLQHLTIHSLVSAE 298
Y+ + T + L T +H +H+ V+ E
Sbjct: 568 DSLYNEDCTFQQLGTYIHSVRDPVHNRVTLE 598


>tr|B7ZNX2|B7ZNX2_MOUSE Anaphase promoting complex subunit 1 OS=Mus
musculus GN=Anapc1 PE=2 SV=1
Length = 1944

Score = 36.2 bits (82), Expect = 1.5
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +2

Query: 26 LEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRASLVQN 205
L P+L++ PRPS P GV T LSK+ G+ ++E+ L + R S N
Sbjct: 514 LPAPSLTMSNMMPRPST----PLDGVG-TPKPLSKLLGS-MDEVVLLSPVPELRDSSKLN 567

Query: 206 *EAYSRNHTKEHLSTLVHLQHLTIHSLVSAE 298
Y+ + T + L T +H +H+ V+ E
Sbjct: 568 DSLYNEDCTFQQLGTYIHSVRDPVHNRVTLE 598


>tr|A2ATQ5|A2ATQ5_MOUSE Anaphase promoting complex subunit 1 OS=Mus
musculus GN=Anapc1 PE=4 SV=1
Length = 1213

Score = 36.2 bits (82), Expect = 1.5
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +2

Query: 26 LEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRASLVQN 205
L P+L++ PRPS P GV T LSK+ G+ ++E+ L + R S N
Sbjct: 514 LPAPSLTMSNMMPRPST----PLDGVG-TPKPLSKLLGS-MDEVVLLSPVPELRDSSKLN 567

Query: 206 *EAYSRNHTKEHLSTLVHLQHLTIHSLVSAE 298
Y+ + T + L T +H +H+ V+ E
Sbjct: 568 DSLYNEDCTFQQLGTYIHSVRDPVHNRVTLE 598


>tr|A2ATQ4|A2ATQ4_MOUSE Anaphase promoting complex subunit 1 OS=Mus
musculus GN=Anapc1 PE=2 SV=1
Length = 1944

Score = 36.2 bits (82), Expect = 1.5
Identities = 28/91 (30%), Positives = 44/91 (48%)
Frame = +2

Query: 26 LEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSPRASLVQN 205
L P+L++ PRPS P GV T LSK+ G+ ++E+ L + R S N
Sbjct: 514 LPAPSLTMSNMMPRPST----PLDGVG-TPKPLSKLLGS-MDEVVLLSPVPELRDSSKLN 567

Query: 206 *EAYSRNHTKEHLSTLVHLQHLTIHSLVSAE 298
Y+ + T + L T +H +H+ V+ E
Sbjct: 568 DSLYNEDCTFQQLGTYIHSVRDPVHNRVTLE 598


>tr|Q1BPB8|Q1BPB8_BURCA Outer membrane efflux protein
OS=Burkholderia cenocepacia (strain AU 1054)
GN=Bcen_3645 PE=3 SV=1
Length = 514

Score = 35.4 bits (80), Expect = 2.5
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2

Query: 5 ATLGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSP 184
+ LG+S L PT++ LP++P P A VS + + GAF E A+ ++K+
Sbjct: 281 SALGISPLSKPTIAALPKRPLPPALGSSVDTIVSDAIARRPDLQGAFAVEKANRAKIKAA 340

Query: 185 RASLV 199
+A+ +
Sbjct: 341 QAAFM 345


>tr|B1K9T8|B1K9T8_BURCC Outer membrane efflux protein
OS=Burkholderia cenocepacia (strain MC0-3)
GN=Bcenmc03_5578 PE=4 SV=1
Length = 514

Score = 35.4 bits (80), Expect = 2.5
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2

Query: 5 ATLGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSP 184
+ LG+S L PT++ LP++P P A VS + + GAF E A+ ++K+
Sbjct: 281 SALGISPLSKPTIAALPKRPLPPALGSSVDTIVSDAIARRPDLQGAFAVEKANRAKIKAA 340

Query: 185 RASLV 199
+A+ +
Sbjct: 341 QAAFM 345


>tr|A0B1D0|A0B1D0_BURCH Outer membrane efflux protein
OS=Burkholderia cenocepacia (strain HI2424)
GN=Bcen2424_4722 PE=3 SV=1
Length = 514

Score = 35.4 bits (80), Expect = 2.5
Identities = 20/65 (30%), Positives = 35/65 (53%)
Frame = +2

Query: 5 ATLGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSP 184
+ LG+S L PT++ LP++P P A VS + + GAF E A+ ++K+
Sbjct: 281 SALGISPLSKPTIAALPKRPLPPALGSSVDTIVSDAIARRPDLQGAFAVEKANRAKIKAA 340

Query: 185 RASLV 199
+A+ +
Sbjct: 341 QAAFM 345


>tr|B4EMC8|B4EMC8_BURCJ Outer membrane efflux protein
OS=Burkholderia cepacia (strain J2315 / LMG 16656)
GN=BceJ2315_53140 PE=3 SV=1
Length = 514

Score = 35.0 bits (79), Expect = 3.3
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2

Query: 5 ATLGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSP 184
+ LG+S L PT++ LP++P P A VS + + GAF E A+ ++K+
Sbjct: 281 SALGISPLSKPTIAALPKRPLPPALGSSVDAIVSDAIARRPDLQGAFAVEKANRAKIKAA 340

Query: 185 RASLV 199
A+ +
Sbjct: 341 EAAFM 345


>tr|Q398E3|Q398E3_BURS3 Outer membrane efflux protein
OS=Burkholderia sp. (strain 383) GN=Bcep18194_B1054 PE=4
SV=1
Length = 514

Score = 34.7 bits (78), Expect = 4.3
Identities = 20/65 (30%), Positives = 34/65 (52%)
Frame = +2

Query: 5 ATLGLSLLEGPTLSVLPQQPRPSATFDKPFPGVSRTTSMLSKIDGAFLEEIADLQQLKSP 184
+ LG+S L PT++ LP++P P A VS + + GAF E A+ ++K+
Sbjct: 281 SALGISPLSKPTIAALPKRPLPPALGSSVDAIVSDAIARRPDLQGAFALEKANRAKIKAA 340

Query: 185 RASLV 199
A+ +
Sbjct: 341 EAAFM 345


>tr|Q0V3S6|Q0V3S6_PHANO Putative uncharacterized protein
OS=Phaeosphaeria nodorum GN=SNOG_01338 PE=4 SV=2
Length = 321

Score = 34.3 bits (77), Expect = 5.6
Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1

Query: 274 NPFPGVSRTTSMLSKIDGAFLEEIA-DLQQLKSPRASLVQN*EAYSRNHTKEHLSTSFPV 450
+P PG SR T+ ++G F E+ D+++L P + S +++ H+ +FP+
Sbjct: 178 DPIPG-SRPTTPAYSLEGPFNSELEEDVEELAPPPRMMHDYSRPSSPANSEAHIHHAFPI 236

Query: 451 RYAQAGCKPLKRHSHS 498
+ + + RH HS
Sbjct: 237 GKSHSSTRSYARHQHS 252