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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914089
Clone id YMU001_000039_G03
Library
Length 528
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAGAGAGAGGTGGCAAAAAGGTTCCTCCCATTTTGCACATAAAGGTCGCTATGTAGAGAA
CATGGATGAAATCTATAAGAAAATTAAGCTTGCCTTGGGGAAGACTCGGACAAAGTAGAA
AAGCTGCTGATCGTCACCGATATGTATAGTTGTGTTCACCTGGTGATTGGGTTCTTTCGC
GGTTTGATAAGGCAAGATTAAAAAAGACGAAGGGCAAGGAAAGGTTGTTTCCCAAGCTCA
ACATTTTCAAGTACTTGATCAGATTAGTGATGTTGCATATAGGCTGAAATTGCCTGACAC
TTGGAAGATTCATAATGCGTTTTATGTGAGTCTTCTAAGACCTCTTGTGGGTGATGTGCC
GGAAGATAATGCCAAATGAAGATCAACCTAAAGTTGAGGTAGAGTCACCAAATGTATTGT
AGCTTTACCTTGAGGCCTTTGGTTTATAACGCACGTATGCCTTAACTCAACGTGCTAAAA
AGAGGGGTGATGTTGGAGCTAGCACATCATATGTACATACAGATTCAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914089|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_G03.
         (528 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id Q7FAB6
Definition tr|Q7FAB6|Q7FAB6_ORYSJ OSJNBa0033H08.9 protein OS=Oryza sativa subsp. japonica
Align length 39
Score (bit) 47.8
E-value 0.0003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914089|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_G03.
         (528 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7FAB6|Q7FAB6_ORYSJ OSJNBa0033H08.9 protein OS=Oryza sativa s...    48   3e-04
tr|Q0JIM4|Q0JIM4_ORYSJ Os01g0790200 protein OS=Oryza sativa subs...    47   5e-04
tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 ...    47   8e-04
tr|Q01L72|Q01L72_ORYSA H0321H01.8 protein OS=Oryza sativa GN=H03...    46   0.001
tr|Q3C0I2|Q3C0I2_LOTJA Putative uncharacterized protein OS=Lotus...    39   0.001
tr|Q3C0I1|Q3C0I1_LOTJA Putative uncharacterized protein OS=Lotus...    39   0.001
tr|Q3C0H8|Q3C0H8_LOTJA Putative uncharacterized protein OS=Lotus...    39   0.001
tr|Q9ZVK3|Q9ZVK3_ARATH Putative retroelement pol polyprotein OS=...    45   0.002
tr|Q0DB93|Q0DB93_ORYSJ Os06g0590100 protein OS=Oryza sativa subs...    45   0.002
tr|B3VTC3|B3VTC3_SORBI Putative retroelement protein OS=Sorghum ...    45   0.002
tr|Q8SA93|Q8SA93_MAIZE Putative polyprotein OS=Zea mays GN=Z195D...    45   0.003
tr|Q9LP90|Q9LP90_ARATH T32E20.30 OS=Arabidopsis thaliana PE=4 SV=1     44   0.004
tr|A8PHN8|A8PHN8_COPC7 Putative uncharacterized protein OS=Copri...    44   0.004
tr|A8PBY9|A8PBY9_COPC7 Putative uncharacterized protein OS=Copri...    44   0.004
tr|A8NGE7|A8NGE7_COPC7 Putative uncharacterized protein OS=Copri...    44   0.004
tr|A8NAU8|A8NAU8_COPC7 Putative uncharacterized protein OS=Copri...    44   0.004
tr|A4R3E9|A4R3E9_MAGGR Putative uncharacterized protein OS=Magna...    44   0.004
tr|A5CAF3|A5CAF3_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5BN76|A5BN76_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5B326|A5B326_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5AVY5|A5AVY5_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A5ATZ0|A5ATZ0_VITVI Putative uncharacterized protein OS=Vitis...    44   0.005
tr|A8PAJ7|A8PAJ7_COPC7 Putative uncharacterized protein OS=Copri...    44   0.005
tr|A5C0S7|A5C0S7_VITVI Putative uncharacterized protein OS=Vitis...    44   0.007
tr|Q2H2Q7|Q2H2Q7_CHAGB Putative uncharacterized protein OS=Chaet...    44   0.007
tr|A5ATI1|A5ATI1_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|A5C5K2|A5C5K2_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|A5C005|A5C005_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|A5B5D0|A5B5D0_VITVI Putative uncharacterized protein OS=Vitis...    42   0.015
tr|A5CBA4|A5CBA4_VITVI Putative uncharacterized protein OS=Vitis...    42   0.019

>tr|Q7FAB6|Q7FAB6_ORYSJ OSJNBa0033H08.9 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0033H08.9 PE=4 SV=1
          Length = 412

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 20/39 (51%), Positives = 31/39 (79%)
 Frame = +2

Query: 245 FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRPLVGDVP 361
           +QVL++I DVAY+L+LP   +++N F+VSL++P  GD P
Sbjct: 230 YQVLERIGDVAYKLRLPAGARLNNVFHVSLMKPFHGDPP 268


>tr|Q0JIM4|Q0JIM4_ORYSJ Os01g0790200 protein OS=Oryza sativa subsp.
           japonica GN=Os01g0790200 PE=4 SV=1
          Length = 519

 Score = 47.4 bits (111), Expect = 5e-04
 Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 9/55 (16%)
 Frame = +2

Query: 215 QGKVVSQAQH---------FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRPLVG 352
           Q  V  +A H         FQV+D++  VAY+L+LP+T  +H+ F+VSLL+P  G
Sbjct: 316 QSSVAPRANHKLAFKYYGPFQVIDKLGTVAYKLQLPETSSVHHVFHVSLLKPAKG 370


>tr|Q9ZS84|Q9ZS84_SOLLC Polyprotein OS=Solanum lycopersicum PE=4 SV=1
          Length = 1542

 Score = 46.6 bits (109), Expect = 8e-04
 Identities = 21/53 (39%), Positives = 32/53 (60%)
 Frame = +2

Query: 197  IKKDEGQGKVVSQAQHFQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRPLVGD 355
            + K   +G +      F+V+ ++ +VAYRLKLP+  KIH  F+VS L+P   D
Sbjct: 1393 VSKTRHRGLIPKYDGPFEVVKRVGEVAYRLKLPERLKIHPTFHVSFLKPYFAD 1445


>tr|Q01L72|Q01L72_ORYSA H0321H01.8 protein OS=Oryza sativa
            GN=H0321H01.8 PE=4 SV=1
          Length = 1602

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 9/55 (16%)
 Frame = +2

Query: 215  QGKVVSQAQH---------FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRPLVG 352
            Q  V  +A H         FQV+D++  VAY+L+LP+T  +H  F+VSLL+P  G
Sbjct: 1399 QSSVAPRANHKLAFKYYGPFQVIDKLGTVAYKLQLPETSSVHPVFHVSLLKPAKG 1453


>tr|Q3C0I2|Q3C0I2_LOTJA Putative uncharacterized protein OS=Lotus
            japonicus PE=4 SV=1
          Length = 1508

 Score = 38.9 bits (89), Expect(2) = 0.001
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +2

Query: 245  FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRP 343
            +QVL ++  VAY L LP   KIH  F+VSLL+P
Sbjct: 1392 YQVLHRVGKVAYTLALPPESKIHPTFHVSLLKP 1424



 Score = 26.2 bits (56), Expect(2) = 0.001
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 126  ADRHRYV*LCSPGDWVLSRFDKARLKKT--KGKERLFPK 236
            AD+HR     S GDWVL +    R   T  +  E+L P+
Sbjct: 1349 ADKHRTDREFSVGDWVLLKLQPYRQSSTQHRASEKLSPR 1387


>tr|Q3C0I1|Q3C0I1_LOTJA Putative uncharacterized protein OS=Lotus
            japonicus PE=4 SV=1
          Length = 1508

 Score = 38.9 bits (89), Expect(2) = 0.001
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +2

Query: 245  FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRP 343
            +QVL ++  VAY L LP   KIH  F+VSLL+P
Sbjct: 1392 YQVLHRVGKVAYTLALPPESKIHPTFHVSLLKP 1424



 Score = 26.2 bits (56), Expect(2) = 0.001
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 126  ADRHRYV*LCSPGDWVLSRFDKARLKKT--KGKERLFPK 236
            AD+HR     S GDWVL +    R   T  +  E+L P+
Sbjct: 1349 ADKHRTDREFSVGDWVLLKLQPYRQSSTQHRASEKLSPR 1387


>tr|Q3C0H8|Q3C0H8_LOTJA Putative uncharacterized protein OS=Lotus
            japonicus PE=4 SV=1
          Length = 1508

 Score = 38.9 bits (89), Expect(2) = 0.001
 Identities = 18/33 (54%), Positives = 23/33 (69%)
 Frame = +2

Query: 245  FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRP 343
            +QVL ++  VAY L LP   KIH  F+VSLL+P
Sbjct: 1392 YQVLHRVGKVAYTLALPPESKIHPTFHVSLLKP 1424



 Score = 26.2 bits (56), Expect(2) = 0.001
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = +3

Query: 126  ADRHRYV*LCSPGDWVLSRFDKARLKKT--KGKERLFPK 236
            AD+HR     S GDWVL +    R   T  +  E+L P+
Sbjct: 1349 ADKHRTDREFSVGDWVLLKLQPYRQSSTQHRASEKLSPR 1387


>tr|Q9ZVK3|Q9ZVK3_ARATH Putative retroelement pol polyprotein
           OS=Arabidopsis thaliana GN=At2g14640 PE=2 SV=1
          Length = 945

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +2

Query: 245 FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRPLVGDVPED 367
           FQV  +  +VAYRL LP+  +IH  F+VSLL+P VGD   D
Sbjct: 832 FQVASKHGEVAYRLTLPEGTRIHPVFHVSLLKPWVGDGEPD 872


>tr|Q0DB93|Q0DB93_ORYSJ Os06g0590100 protein OS=Oryza sativa subsp.
            japonica GN=Os06g0590100 PE=4 SV=1
          Length = 1399

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 21/40 (52%), Positives = 28/40 (70%)
 Frame = +2

Query: 245  FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRPLVGDVPE 364
            +QV D+I DVAYRLKLP   +IH+ F+V LL+   G  P+
Sbjct: 1266 YQVSDRIGDVAYRLKLPAGARIHDVFHVGLLKEFKGTPPD 1305


>tr|B3VTC3|B3VTC3_SORBI Putative retroelement protein OS=Sorghum
            bicolor PE=4 SV=1
          Length = 1029

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 19/39 (48%), Positives = 29/39 (74%)
 Frame = +2

Query: 245  FQVLDQISDVAYRLKLPDTWKIHNAFYVSLLRPLVGDVP 361
            F VL++I  VAYRL+LP+T ++HN F++ LL+   G+ P
Sbjct: 902  FCVLERIGSVAYRLQLPETTRLHNVFHIGLLKQWRGEPP 940