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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914090
Clone id YMU001_000039_G04
Library
Length 579
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GTGTGCATCACTAAGTGAAGATGGATTGCTTGGATGAGATTGGGTGTTGGTGGATGAGGG
TAATGAGAGGCTTAGTTGCAGCGTGGGATCGCCTTCGCCGTCGTCATTGCCGAGCAATAC
TCGCTGTCTCTTATGGGTTGTTGCTCTGCTCTGGCCAATCCCACCACTTTTGGATTCACC
TGATTGTGGGTTCATTTGCTTCAAGTACATGACTCCTGACTGCAGATCAAGACACCTTTC
CCATCCTCTCGGAAGGGGCGGGAGGTCGGAGTCGAGGCAGACTTCTCCACTCTTGTTCAC
TGCAATCCAAGATATGGTTTCTCCCATTCTATTGTCCACAAATTGGCTAAATAACAGCGA
TAATAATTTGCTGATAAAAATCAGGATGGATGGATCGACACAAGGTCCAAATCTTTTCAA
GTGAGCCGCGGAGCGAACAGTGATGATGGTTTCATGTAGAATTAGAGGGCTGGGAAGTTT
GATATTGATCGATAGAGACTAGCTGCGCGGCGCAAGCTTGCCGATCTGGCTATGTAATTC
AGTCTGTAGAAGGATTTTAGCATGATCTGATCCACAGGT
■■Homology search results ■■ -
sp_hit_id Q6C2Z7
Definition sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica
Align length 61
Score (bit) 33.5
E-value 0.79
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914090|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_G04.
         (579 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytic...    33   0.79 
sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog OS=Dicty...    31   3.9  
sp|Q9KTA6|SYQ_VIBCH Glutaminyl-tRNA synthetase OS=Vibrio cholera...    30   8.7  
sp|A5F2T1|SYQ_VIBC3 Glutaminyl-tRNA synthetase OS=Vibrio cholera...    30   8.7  
sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN...    30   8.7  

>sp|Q6C2Z7|YSH1_YARLI Endoribonuclease YSH1 OS=Yarrowia lipolytica
           GN=YSH1 PE=3 SV=2
          Length = 827

 Score = 33.5 bits (75), Expect = 0.79
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = +3

Query: 135 GLLLCSGQSHHFWI--HLIVGSFASST*LLTADQDTFPILSEGAGGRSRGRLLHSCSLQS 308
           G ++C    H   +   L+VG+F     LLT D DTF  ++ G GGR  GR  H  S + 
Sbjct: 6   GQIMCFRVGHFLLVGHFLLVGNF-----LLTDDSDTFSFVALG-GGREVGRSCHVISFKG 59

Query: 309 K 311
           K
Sbjct: 60  K 60


>sp|Q54DA1|NC2A_DICDI Dr1-associated corepressor homolog
           OS=Dictyostelium discoideum GN=drap1 PE=3 SV=1
          Length = 550

 Score = 31.2 bits (69), Expect = 3.9
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = +2

Query: 218 DCRSRHLSHPLGRGGRSESRQTSPLLFTAIQDMVSPILLSTNWLNNSDNN 367
           D +S  L  P  R   + S ++SP L ++   + SP L + N  NN++NN
Sbjct: 207 DIQSTSLKKPSARKSNTTSPKSSPFLSSSAGSIQSPPLNNNNNNNNNNNN 256


>sp|Q9KTA6|SYQ_VIBCH Glutaminyl-tRNA synthetase OS=Vibrio cholerae
           GN=glnS PE=3 SV=1
          Length = 556

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 315 ISWIAVNKSGEVCLDSDLPPLPRGWERCLDL-QSGVMYLKQMNPQ 184
           ++W+  + SGEVC  SD     + +E  ++L Q G+ Y+ ++ P+
Sbjct: 86  VTWLGFDWSGEVCYSSDY--FDKLYEYAIELIQKGLAYVDELTPE 128


>sp|A5F2T1|SYQ_VIBC3 Glutaminyl-tRNA synthetase OS=Vibrio cholerae
           serotype O1 (strain ATCC 39541 / Ogawa 395 / O395)
           GN=glnS PE=3 SV=1
          Length = 556

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = -1

Query: 315 ISWIAVNKSGEVCLDSDLPPLPRGWERCLDL-QSGVMYLKQMNPQ 184
           ++W+  + SGEVC  SD     + +E  ++L Q G+ Y+ ++ P+
Sbjct: 86  VTWLGFDWSGEVCYSSDY--FDKLYEYAIELIQKGLAYVDELTPE 128


>sp|Q4R1I4|OPN4_BRABE Melanopsin OS=Branchiostoma belcheri GN=OPN4
           PE=1 SV=1
          Length = 706

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +2

Query: 128 LLWVVALLWPIPPLLD-----SPDCGFIC-FKYMTP 217
           LLW+ +L+W +PPL       S   G  C F YMTP
Sbjct: 208 LLWIWSLVWALPPLFGWSAYVSEGFGTSCTFDYMTP 243
tr_hit_id A9RXE5
Definition tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 41.6
E-value 0.032
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914090|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_G04.
         (579 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.032
tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.072
tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.16 
tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.27 
tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.8  
tr|A9RQ85|A9RQ85_PHYPA Predicted protein OS=Physcomitrella paten...    36   1.8  
tr|A7QD65|A7QD65_VITVI Chromosome undetermined scaffold_80, whol...    36   1.8  
tr|B2TAW5|B2TAW5_BURPP Short-chain dehydrogenase/reductase SDR O...    35   2.3  
tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea m...    35   2.3  
tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed O...    35   3.0  
tr|B4FLZ3|B4FLZ3_MAIZE Putative uncharacterized protein OS=Zea m...    35   3.0  
tr|A2ZJ82|A2ZJ82_ORYSI Putative uncharacterized protein OS=Oryza...    35   3.0  
tr|B7GAE9|B7GAE9_PHATR Predicted protein OS=Phaeodactylum tricor...    35   4.0  
tr|A9SJA3|A9SJA3_PHYPA Predicted protein OS=Physcomitrella paten...    35   4.0  
tr|Q9SA48|Q9SA48_ARATH >F3O9.30 (At1g16500) (Expressed protein) ...    34   6.8  
tr|Q10QM7|Q10QM7_ORYSJ Os03g0191200 protein OS=Oryza sativa subs...    34   6.8  
tr|A9RXE4|A9RXE4_PHYPA Predicted protein OS=Physcomitrella paten...    34   6.8  
tr|A7Q9R8|A7Q9R8_VITVI Chromosome chr5 scaffold_67, whole genome...    34   6.8  
tr|A5C6B2|A5C6B2_VITVI Putative uncharacterized protein OS=Vitis...    34   6.8  
tr|A2XDF1|A2XDF1_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.8  
tr|A4V8K9|A4V8K9_9MICC Putative TraG family protein OS=Arthrobac...    33   8.7  
tr|Q0V4Z9|Q0V4Z9_PHANO Putative uncharacterized protein OS=Phaeo...    33   8.7  
tr|Q53ME9|Q53ME9_ORYSJ Os11g0294400 protein OS=Oryza sativa subs...    33   8.8  
tr|A2ZDI6|A2ZDI6_ORYSI Putative uncharacterized protein OS=Oryza...    33   8.8  

>tr|A9RXE5|A9RXE5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_71802 PE=4 SV=1
          Length = 454

 Score = 41.6 bits (96), Expect = 0.032
 Identities = 19/34 (55%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = -1

Query: 288 GEVCLD-SDLPPLPRGWERCLDLQSGVMYLKQMN 190
           G VC D    P LP GWE+CLDL+SG++Y K  N
Sbjct: 21  GYVCGDLQPEPQLPSGWEKCLDLKSGLIYFKDWN 54


>tr|A9SJA2|A9SJA2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_80180 PE=4 SV=1
          Length = 432

 Score = 40.4 bits (93), Expect = 0.072
 Identities = 19/38 (50%), Positives = 26/38 (68%)
 Frame = -1

Query: 276 LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQSGESKSG 163
           LDS   P+P GWE+CLDL++G ++L  +N  S ES  G
Sbjct: 82  LDSGDAPVPSGWEKCLDLKTGKLFL--VNKNSDESSFG 117


>tr|A9SNJ7|A9SNJ7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165908 PE=4 SV=1
          Length = 418

 Score = 39.3 bits (90), Expect = 0.16
 Identities = 14/24 (58%), Positives = 19/24 (79%)
 Frame = -1

Query: 261 PPLPRGWERCLDLQSGVMYLKQMN 190
           P LP GWE+CLDL+SG++Y +  N
Sbjct: 91  PQLPSGWEKCLDLKSGLIYFRDWN 114


>tr|A9SNJ8|A9SNJ8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165909 PE=4 SV=1
          Length = 688

 Score = 38.5 bits (88), Expect = 0.27
 Identities = 18/35 (51%), Positives = 23/35 (65%)
 Frame = -1

Query: 276 LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQSGES 172
           LD    PLP GWE+CLDL++G +Y   +N  SG S
Sbjct: 386 LDPSEEPLPSGWEKCLDLKTGKLY--YVNKSSGVS 418


>tr|A9TP00|A9TP00_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171133 PE=4 SV=1
          Length = 932

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -1

Query: 297 NKSGEVC-LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQSGESKSGGIGQSRATTHKRQR 121
           N S E   LD D  PLP  WE+CLDL++G +Y          +KS G+  S      +QR
Sbjct: 599 NSSAEFLELDPD-QPLPADWEKCLDLKTGELYF--------VNKSTGVRTSEDPRKVQQR 649

Query: 120 VL 115
           V+
Sbjct: 650 VV 651


>tr|A9RQ85|A9RQ85_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_160384 PE=4 SV=1
          Length = 518

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
 Frame = -1

Query: 276 LDSDLPPLPRGWERCLDLQSGVMYLKQMNPQSGESKSG---GIGQSRATT 136
           LD +  PLP  WE+CLDL++G +Y   +N  +G + S    GI  + ATT
Sbjct: 166 LDLEGEPLPSHWEKCLDLKTGDLYF--VNRCTGVTSSDDPRGIRTNNATT 213


>tr|A7QD65|A7QD65_VITVI Chromosome undetermined scaffold_80, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00035710001 PE=4 SV=1
          Length = 244

 Score = 35.8 bits (81), Expect = 1.8
 Identities = 20/38 (52%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
 Frame = -1

Query: 276 LDSDLPPLPRGWERCLDLQSGVMYLKQMN-PQSGESKS 166
           LD DL  +P GWE+ LDL+SG +YL++ N P S  S S
Sbjct: 53  LDLDLK-VPDGWEKRLDLKSGKVYLQRCNSPMSSSSSS 89


>tr|B2TAW5|B2TAW5_BURPP Short-chain dehydrogenase/reductase SDR
           OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
           GN=Bphyt_6140 PE=4 SV=1
          Length = 254

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
 Frame = -1

Query: 306 IAVNKSGEVCLDSDLPPLPRGWERCLDLQ-SGVMYLKQ-MNPQSGESKSGGIGQSRATTH 133
           I +N +G       L   P  W+R LD+   GV+YL Q + PQ  + KSG IG   + + 
Sbjct: 88  ILINNAGITQAAKFLDIDPESWDRILDVNLRGVLYLSQAVVPQMKKQKSGSIGCMSSVSA 147

Query: 132 KRQRVLLG 109
           +R   +LG
Sbjct: 148 QRGGGILG 155


>tr|B4FDG6|B4FDG6_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 232

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -1

Query: 336 DNRMGETISWIAVNKSGEVCLDSDLPPLPRGWERCLDLQSGVMYLKQMNPQSGESK 169
           D+  GE +  I +N         D  PLP  W+RCLD++SG +Y      Q    K
Sbjct: 57  DDDRGEVVDGIELN--------FDAAPLPPEWQRCLDIKSGQIYYYNTRTQKRTCK 104


>tr|Q2QVE4|Q2QVE4_ORYSJ WW domain containing protein, expressed
           OS=Oryza sativa subsp. japonica GN=LOC_Os12g13100 PE=4
           SV=2
          Length = 225

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -1

Query: 258 PLPRGWERCLDLQSGVMY 205
           PLP  WE+CLDLQSG MY
Sbjct: 78  PLPLDWEQCLDLQSGRMY 95