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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914101
Clone id YMU001_000039_H04
Library
Length 551
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CTTGCTGAAGGCCGGCTAAAGGTGCATTGAGAGAGAGAGAGCGAGAGAGAGATGCAGGAT
CTAGGAGTGGAAGCGAAGGAGGCTGCAGTGCGGGAGGTAGCGAAGCTGTTGCCGCTGCCT
AGCTCCTTGGCTTCCATCTCGGCCCTCAGAGCTGACTATGCGCAACGTCTCCAGGCTAAT
GACGCTCAGCTCAGTACTAGCGTGATCACTCAGGTTGAACAGGCCCGATCTGGTATTGAT
TCCCTGAATTCCTCTCAAGTAACTATCACACAATTGCGTGACAACTTTGCTCTCATTGAC
AAGCTGTGTCAGGAATGCCAATCCTTGATTGATCACCATGATCTGATTAAGTTGCTGAGT
AATGCAAGGAATAATCTAAATACCACCCTAAAGGATGTGGAAGGAATGATGTCAATTTCA
GCGGAGGCTGCAGAAGCAAGGGAATCTTTAAGTGATGAGCGCCAGCTTGTTAATACGTTC
GAGAAATTGACTGCTTTAGAGGGCAAAAGACGATTTGCCTTAGCTACAGCCTCCTCCCAT
AAAGAAGAAGC
■■Homology search results ■■ -
sp_hit_id Q54BP6
Definition sp|Q54BP6|EXOC3_DICDI Exocyst complex component 3 OS=Dictyostelium discoideum
Align length 129
Score (bit) 56.6
E-value 8.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914101|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_H04.
         (551 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54BP6|EXOC3_DICDI Exocyst complex component 3 OS=Dictyosteli...    57   8e-08
sp|Q8BVN0|CC122_MOUSE Coiled-coil domain-containing protein 122 ...    32   1.6  
sp|Q47ZU5|TTCA_COLP3 tRNA 2-thiocytidine biosynthesis protein tt...    31   4.6  

>sp|Q54BP6|EXOC3_DICDI Exocyst complex component 3 OS=Dictyostelium
           discoideum GN=exoc3 PE=3 SV=1
          Length = 783

 Score = 56.6 bits (135), Expect = 8e-08
 Identities = 35/129 (27%), Positives = 65/129 (50%)
 Frame = +1

Query: 163 QRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSLIDHHD 342
           Q+ +  +AQ+   V +++E+++ G+++L  S   I ++ ++F+   +LC E  +LI H+ 
Sbjct: 47  QQKKTIEAQIKNEVHSELEKSKKGLETLYKSYNRINRMDESFSDTVELCSETSNLIGHYQ 106

Query: 343 LIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGKRRFAL 522
           LIK ++  R NL   LK+V+ ++                  L+    KL  LE   + AL
Sbjct: 107 LIKKVNTVRVNLINILKEVDRLLTIPEKAAEIEQLLSDDLNLLEIHSKLRELERLHQKAL 166

Query: 523 ATASSHKEE 549
               S+ EE
Sbjct: 167 KQFESNFEE 175


>sp|Q8BVN0|CC122_MOUSE Coiled-coil domain-containing protein 122
           OS=Mus musculus GN=Ccdc122 PE=2 SV=1
          Length = 290

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = +1

Query: 163 QRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSLIDHHD 342
           + L +   +L     T  E+    +   N+  V I   +DN   I   C     L +  D
Sbjct: 99  ESLYSESLKLKFDTETAQEKFEEQMIKYNAYYVKIKAYKDNLGEIKSQCPFMTELYEKRD 158

Query: 343 LIKLLSNARNNLNTTLKDVEG 405
           LIK L   + +L   L+D +G
Sbjct: 159 LIKNLKTMKEDLMENLQDSQG 179


>sp|Q47ZU5|TTCA_COLP3 tRNA 2-thiocytidine biosynthesis protein ttcA
           OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
           GN=ttcA PE=3 SV=1
          Length = 314

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 294 ESKVVTQLCDSYLRGIQGINTRSGLFNLSDHASTELSVISLETLRIVSSEGRD 136
           ++ V + LCDS L   + IN+ SG+ N  D A  E+++ + + L + +    D
Sbjct: 253 QNVVPSHLCDSNLFDFKSINSTSGIINGGDTAFDEVAIEAPQDLSMKNQPNAD 305
tr_hit_id B8LQP5
Definition tr|B8LQP5|B8LQP5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 134
Score (bit) 175.0
E-value 1.0e-42
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914101|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_H04.
         (551 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQP5|B8LQP5_PICSI Putative uncharacterized protein OS=Picea...   175   1e-42
tr|A7QSA8|A7QSA8_VITVI Chromosome chr3 scaffold_157, whole genom...   170   5e-41
tr|A7PYJ0|A7PYJ0_VITVI Chromosome chr12 scaffold_38, whole genom...   170   5e-41
tr|A5BZB3|A5BZB3_VITVI Putative uncharacterized protein OS=Vitis...   170   5e-41
tr|A9RYA4|A9RYA4_PHYPA Predicted protein OS=Physcomitrella paten...   166   6e-40
tr|Q9M9G4|Q9M9G4_ARATH F14O23.20 protein OS=Arabidopsis thaliana...   161   2e-38
tr|Q94AI6|Q94AI6_ARATH Putative uncharacterized protein At1g7182...   161   2e-38
tr|Q8RVQ6|Q8RVQ6_ARATH SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=2...   161   2e-38
tr|A3ABD6|A3ABD6_ORYSJ Putative uncharacterized protein OS=Oryza...   160   4e-38
tr|A2X9M7|A2X9M7_ORYSI Putative uncharacterized protein OS=Oryza...   160   4e-38
tr|A7PYJ9|A7PYJ9_VITVI Chromosome chr12 scaffold_38, whole genom...   113   6e-24
tr|A5BGA5|A5BGA5_VITVI Putative uncharacterized protein OS=Vitis...    66   1e-09
tr|A8JI29|A8JI29_CHLRE Component of the exocyst complex OS=Chlam...    59   1e-07
tr|Q2GVC0|Q2GVC0_CHAGB Putative uncharacterized protein OS=Chaet...    55   2e-06
tr|A4R7J2|A4R7J2_MAGGR Putative uncharacterized protein OS=Magna...    54   5e-06
tr|Q4WPU5|Q4WPU5_ASPFU Exocyst complex component Sec6, putative ...    53   1e-05
tr|B0Y6N6|B0Y6N6_ASPFC Exocyst complex component Sec6, putative ...    53   1e-05
tr|Q873E6|Q873E6_NEUCR Related to protein transport protein SEC6...    51   4e-05
tr|A1CWR8|A1CWR8_NEOFI Exocyst complex component Sec6, putative ...    51   4e-05
tr|Q0CZH5|Q0CZH5_ASPTN Putative uncharacterized protein OS=Asper...    50   8e-05
tr|A6SES2|A6SES2_BOTFB Putative uncharacterized protein OS=Botry...    50   8e-05
tr|Q2UJL5|Q2UJL5_ASPOR Exocyst complex subunit SEC6 OS=Aspergill...    50   1e-04
tr|B8N0X1|B8N0X1_ASPFL Exocyst complex component Sec6, putative ...    50   1e-04
tr|A2QJ85|A2QJ85_ASPNC Complex: Sec6p of S. cerevisiae and six o...    50   1e-04
tr|Q6Z8L4|Q6Z8L4_ORYSJ Os02g0749500 protein OS=Oryza sativa subs...    49   1e-04
tr|Q0TXU6|Q0TXU6_PHANO Putative uncharacterized protein OS=Phaeo...    49   1e-04
tr|B2W659|B2W659_PYRTR Putative uncharacterized protein OS=Pyren...    49   1e-04
tr|A1CHZ2|A1CHZ2_ASPCL Exocyst complex component Sec6, putative ...    49   1e-04
tr|Q5BBU2|Q5BBU2_EMENI Putative uncharacterized protein OS=Emeri...    49   2e-04
tr|A7F9Q6|A7F9Q6_SCLS1 Putative uncharacterized protein OS=Scler...    49   2e-04

>tr|B8LQP5|B8LQP5_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 756

 Score =  175 bits (444), Expect = 1e-42
 Identities = 89/134 (66%), Positives = 109/134 (81%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           +ADYA R QANDAQLS +V+TQVEQA++GI++L++SQ TI  L++NF LID+LCQECQ+L
Sbjct: 38  KADYAIRQQANDAQLSATVVTQVEQAQAGIEALSASQKTIQWLQENFILIDRLCQECQTL 97

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           I++HD IKLLSNARNNLNTTLKD+EGMM                R+LV+TFE+LTAL+GK
Sbjct: 98  IENHDQIKLLSNARNNLNTTLKDIEGMMSIFVEASEARDSLNDDRELVHTFERLTALDGK 157

Query: 508 RRFALATASSHKEE 549
           RRFALA ASSHKEE
Sbjct: 158 RRFALAAASSHKEE 171


>tr|A7QSA8|A7QSA8_VITVI Chromosome chr3 scaffold_157, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00005752001
           PE=4 SV=1
          Length = 756

 Score =  170 bits (430), Expect = 5e-41
 Identities = 85/134 (63%), Positives = 105/134 (78%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           +ADY  R QANDAQLST V  QVEQA++G++S++SSQ TI QLR+NF  I++LCQECQ+L
Sbjct: 35  KADYITRQQANDAQLSTMVAEQVEQAQAGLESISSSQKTINQLRENFLSIERLCQECQNL 94

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           I++HD IKLLSN RNNLNTTLKDVEGMM                ++L+NT+E+LTAL+GK
Sbjct: 95  IENHDQIKLLSNVRNNLNTTLKDVEGMMSISVEASEARDSLSDDKELINTYERLTALDGK 154

Query: 508 RRFALATASSHKEE 549
           RRFALA A+SHKEE
Sbjct: 155 RRFALAAAASHKEE 168


>tr|A7PYJ0|A7PYJ0_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026459001
           PE=4 SV=1
          Length = 325

 Score =  170 bits (430), Expect = 5e-41
 Identities = 85/134 (63%), Positives = 105/134 (78%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           +ADY  R QANDAQLST V  QVEQA++G++S++SSQ TI QLR+NF  I++LCQECQ+L
Sbjct: 35  KADYITRQQANDAQLSTMVAEQVEQAQAGLESISSSQKTINQLRENFLSIERLCQECQNL 94

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           I++HD IKLLSN RNNLNTTLKDVEGMM                ++L+NT+E+LTAL+GK
Sbjct: 95  IENHDQIKLLSNVRNNLNTTLKDVEGMMSISVEASEARDSLSDDKELINTYERLTALDGK 154

Query: 508 RRFALATASSHKEE 549
           RRFALA A+SHKEE
Sbjct: 155 RRFALAAAASHKEE 168


>tr|A5BZB3|A5BZB3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_029628 PE=4 SV=1
          Length = 254

 Score =  170 bits (430), Expect = 5e-41
 Identities = 85/134 (63%), Positives = 105/134 (78%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           +ADY  R QANDAQLST V  QVEQA++G++S++SSQ TI QLR+NF  I++LCQECQ+L
Sbjct: 54  KADYITRQQANDAQLSTMVAEQVEQAQAGLESISSSQKTINQLRENFLSIERLCQECQNL 113

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           I++HD IKLLSN RNNLNTTLKDVEGMM                ++L+NT+E+LTAL+GK
Sbjct: 114 IENHDQIKLLSNVRNNLNTTLKDVEGMMSISVEASEARDSLSDDKELINTYERLTALDGK 173

Query: 508 RRFALATASSHKEE 549
           RRFALA A+SHKEE
Sbjct: 174 RRFALAAAASHKEE 187


>tr|A9RYA4|A9RYA4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_179426 PE=4 SV=1
          Length = 749

 Score =  166 bits (421), Expect = 6e-40
 Identities = 88/134 (65%), Positives = 102/134 (76%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           R+DYA R Q NDAQLS+SV++QVEQAR+GID+L  SQ  I  LR+NF LID+LC+ECQ+L
Sbjct: 35  RSDYALRQQHNDAQLSSSVMSQVEQARAGIDALADSQSKIGTLRENFELIDRLCRECQTL 94

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           I+HHD IKLLSNARNNLNTTLKDVEGMM                R+L+ TFE LTALE K
Sbjct: 95  IEHHDQIKLLSNARNNLNTTLKDVEGMMSISTEAAEARASLSDERELLRTFEALTALEQK 154

Query: 508 RRFALATASSHKEE 549
           RRFALAT S+ KEE
Sbjct: 155 RRFALATVSTRKEE 168


>tr|Q9M9G4|Q9M9G4_ARATH F14O23.20 protein OS=Arabidopsis thaliana
           GN=F14O23.20 PE=4 SV=1
          Length = 739

 Score =  161 bits (408), Expect = 2e-38
 Identities = 83/128 (64%), Positives = 99/128 (77%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           +ADY  R QANDAQLST V  QVEQA++G++SL+SS+ TI +LRDNF  IDKLCQECQ+L
Sbjct: 34  KADYIARQQANDAQLSTMVAEQVEQAQAGLESLSSSEKTIYELRDNFISIDKLCQECQTL 93

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           ID+HD IKLLSNARNNLN TLKDVEGMM                +++VNT+E+LTAL+GK
Sbjct: 94  IDNHDQIKLLSNARNNLNKTLKDVEGMMSISVEAAAARDSLSDDKEIVNTYERLTALDGK 153

Query: 508 RRFALATA 531
           RRFALA A
Sbjct: 154 RRFALAAA 161


>tr|Q94AI6|Q94AI6_ARATH Putative uncharacterized protein At1g71820
           OS=Arabidopsis thaliana GN=At1g71820 PE=2 SV=1
          Length = 752

 Score =  161 bits (408), Expect = 2e-38
 Identities = 83/128 (64%), Positives = 99/128 (77%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           +ADY  R QANDAQLST V  QVEQA++G++SL+SS+ TI +LRDNF  IDKLCQECQ+L
Sbjct: 35  KADYIARQQANDAQLSTMVAEQVEQAQAGLESLSSSEKTIYELRDNFISIDKLCQECQTL 94

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           ID+HD IKLLSNARNNLN TLKDVEGMM                +++VNT+E+LTAL+GK
Sbjct: 95  IDNHDQIKLLSNARNNLNKTLKDVEGMMSISVEAAAARDSLSDDKEIVNTYERLTALDGK 154

Query: 508 RRFALATA 531
           RRFALA A
Sbjct: 155 RRFALAAA 162


>tr|Q8RVQ6|Q8RVQ6_ARATH SEC6 OS=Arabidopsis thaliana GN=SEC6 PE=2
           SV=1
          Length = 751

 Score =  161 bits (408), Expect = 2e-38
 Identities = 83/128 (64%), Positives = 99/128 (77%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           +ADY  R QANDAQLST V  QVEQA++G++SL+SS+ TI +LRDNF  IDKLCQECQ+L
Sbjct: 34  KADYIARQQANDAQLSTMVAEQVEQAQAGLESLSSSEKTIYELRDNFISIDKLCQECQTL 93

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           ID+HD IKLLSNARNNLN TLKDVEGMM                +++VNT+E+LTAL+GK
Sbjct: 94  IDNHDQIKLLSNARNNLNKTLKDVEGMMSISVEAAAARDSLSDDKEIVNTYERLTALDGK 153

Query: 508 RRFALATA 531
           RRFALA A
Sbjct: 154 RRFALAAA 161


>tr|A3ABD6|A3ABD6_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_008108 PE=4 SV=1
          Length = 755

 Score =  160 bits (405), Expect = 4e-38
 Identities = 83/134 (61%), Positives = 100/134 (74%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           ++DY  R Q NDAQLST V  QVEQA +GI++L  SQ TI +LR+NF  IDKLCQECQ+L
Sbjct: 33  KSDYLARQQTNDAQLSTMVAEQVEQAHAGINALALSQETINKLRENFIDIDKLCQECQTL 92

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           I++HD IKLLSNARNNLNTTLKDV GMM                ++L+ T+E+LTAL+GK
Sbjct: 93  IENHDKIKLLSNARNNLNTTLKDVGGMMSISVEAAAARDSLSDDKELIRTYERLTALDGK 152

Query: 508 RRFALATASSHKEE 549
           RRFALA A+SHKEE
Sbjct: 153 RRFALAAAASHKEE 166


>tr|A2X9M7|A2X9M7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08945 PE=4 SV=1
          Length = 755

 Score =  160 bits (405), Expect = 4e-38
 Identities = 83/134 (61%), Positives = 100/134 (74%)
 Frame = +1

Query: 148 RADYAQRLQANDAQLSTSVITQVEQARSGIDSLNSSQVTITQLRDNFALIDKLCQECQSL 327
           ++DY  R Q NDAQLST V  QVEQA +GI++L  SQ TI +LR+NF  IDKLCQECQ+L
Sbjct: 33  KSDYLARQQTNDAQLSTMVAEQVEQAHAGINALALSQETINKLRENFIDIDKLCQECQTL 92

Query: 328 IDHHDLIKLLSNARNNLNTTLKDVEGMMXXXXXXXXXXXXXXXXRQLVNTFEKLTALEGK 507
           I++HD IKLLSNARNNLNTTLKDV GMM                ++L+ T+E+LTAL+GK
Sbjct: 93  IENHDKIKLLSNARNNLNTTLKDVGGMMSISVEAAAARDSLSDDKELIRTYERLTALDGK 152

Query: 508 RRFALATASSHKEE 549
           RRFALA A+SHKEE
Sbjct: 153 RRFALAAAASHKEE 166