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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914102
Clone id YMU001_000039_H05
Library
Length 320
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000039_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGAATTGAGTGCATGGCAGGTGAGAAGGACAATGTGTGTCCAAAGATAGAGGTGCTTCCT
ATGCAGCCAAAGCACTATATGGTGGGTGATGTGGATTCTAAGGTGGCGTGCTTGTTTTGG
CCGATGAAGGGAGGTGCTAGTGGCGCATGCCCGCATGGGAATGGTCCGAAGTCCATACGA
TGCTGATGTGGTAGTGCGACCGAAAGGGCTGTGTTCCCACGCTCGTGAAAGGGGCCCCCT
TTTGGGTACTAAGCCCCCCCCCAACGGCCACCANCACCACTAGCGACATCGCTAGTGGTG
AGGTAAGGGGCAGTTCCCGT
■■Homology search results ■■ -
sp_hit_id Q05586
Definition sp|Q05586|NMDZ1_HUMAN Glutamate [NMDA] receptor subunit zeta-1 OS=Homo sapiens
Align length 66
Score (bit) 30.8
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914102|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_H05.
         (320 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q05586|NMDZ1_HUMAN Glutamate [NMDA] receptor subunit zeta-1 O...    31   2.2  
sp|Q5R1P0|NMDZ1_CANFA Glutamate [NMDA] receptor subunit zeta-1 O...    31   2.2  
sp|P35439|NMDZ1_RAT Glutamate [NMDA] receptor subunit zeta-1 OS=...    30   2.8  
sp|P35438|NMDZ1_MOUSE Glutamate [NMDA] receptor subunit zeta-1 O...    30   2.8  
sp|A8MJN5|SECA_ALKOO Protein translocase subunit secA OS=Alkalip...    30   4.8  
sp|Q2LUR5|MUTL_SYNAS DNA mismatch repair protein mutL OS=Syntrop...    30   4.8  
sp|Q05584|GLO2_YEAST Hydroxyacylglutathione hydrolase, cytoplasm...    29   6.3  
sp|Q3LU40|PROP1_CEBAP Homeobox protein prophet of Pit-1 OS=Cebus...    29   8.2  
sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Aloua...    29   8.2  

>sp|Q05586|NMDZ1_HUMAN Glutamate [NMDA] receptor subunit zeta-1
           OS=Homo sapiens GN=GRIN1 PE=1 SV=1
          Length = 938

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = -3

Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40
           F  T  S + G   IP+    T  S++  K   HL    T     H   +W     +Y W
Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYSW 160

Query: 39  THIVLL 22
            HI+LL
Sbjct: 161 NHIILL 166


>sp|Q5R1P0|NMDZ1_CANFA Glutamate [NMDA] receptor subunit zeta-1
           OS=Canis familiaris GN=GRIN1 PE=2 SV=2
          Length = 943

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = -3

Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40
           F  T  S + G   IP+    T  S++  K   HL    T     H   +W     +Y W
Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYSW 160

Query: 39  THIVLL 22
            HI+LL
Sbjct: 161 NHIILL 166


>sp|P35439|NMDZ1_RAT Glutamate [NMDA] receptor subunit zeta-1
           OS=Rattus norvegicus GN=Grin1 PE=1 SV=1
          Length = 938

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = -3

Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40
           F  T  S + G   IP+    T  S++  K   HL    T     H   +W     +Y W
Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYNW 160

Query: 39  THIVLL 22
            HI+LL
Sbjct: 161 NHIILL 166


>sp|P35438|NMDZ1_MOUSE Glutamate [NMDA] receptor subunit zeta-1
           OS=Mus musculus GN=Grin1 PE=1 SV=1
          Length = 938

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 5/66 (7%)
 Frame = -3

Query: 204 FGRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHIT-----HHIVLWLHRKHLYLW 40
           F  T  S + G   IP+    T  S++  K   HL    T     H   +W     +Y W
Sbjct: 102 FTPTPVSYTAGFYRIPVLGLTTRMSIYSDKSI-HLSFLRTVPPYSHQSSVWFEMMRVYNW 160

Query: 39  THIVLL 22
            HI+LL
Sbjct: 161 NHIILL 166


>sp|A8MJN5|SECA_ALKOO Protein translocase subunit secA
           OS=Alkaliphilus oremlandii (strain OhILAs) GN=secA PE=3
           SV=1
          Length = 890

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = +1

Query: 22  EKDNVCPKIEVL-PMQPKHYMVGDVDSKVACLFWPMKGGASGACPHGNGPKSIRC*CG 192
           EK+ V  + +V  P++  H   GD D+K A +    + G +  CP G+G K  +C CG
Sbjct: 836 EKEAVVERKQVAKPIEASH---GDGDAKKAPVVKKEESGRNDLCPCGSGKKYKKC-CG 889


>sp|Q2LUR5|MUTL_SYNAS DNA mismatch repair protein mutL OS=Syntrophus
           aciditrophicus (strain SB) GN=mutL PE=3 SV=1
          Length = 616

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = -3

Query: 201 GRTTTSASYGLRTIPMRACATSTSLHRPKQARHLRIHITHHIVLWLHRK 55
           G T      G  + P   CAT+  ++     RH+R H+ +H V+  +R+
Sbjct: 227 GETDRVRVTGFASRPDFTCATTRQIYTFVNRRHVRDHLLNHAVMTAYRR 275


>sp|Q05584|GLO2_YEAST Hydroxyacylglutathione hydrolase, cytoplasmic
           isozyme OS=Saccharomyces cerevisiae GN=GLO2 PE=1 SV=1
          Length = 274

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 1   RIECMAGEKDNVCPKIEVLPMQPKHYMVGDVDSKVACLFWP 123
           ++E + G KD  CPK+ ++P   K   +GD++  + C+  P
Sbjct: 83  KVEVIGGSKD--CPKVTIIPENLKKLHLGDLE--ITCIRTP 119


>sp|Q3LU40|PROP1_CEBAP Homeobox protein prophet of Pit-1 OS=Cebus
           apella GN=PROP1 PE=3 SV=1
          Length = 226

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
 Frame = -1

Query: 248 YPKGGPFHERGNTALSVALPHQHRMDFG---PFPCGHAPLAPP 129
           +P    F  + +T  + ALPHQ    +    P P GH P  PP
Sbjct: 169 HPYSHDFPSQPSTGGTFALPHQSEDGYPTLHPAPAGHLPCPPP 211


>sp|Q3LU38|PROP1_ALOBE Homeobox protein prophet of Pit-1 OS=Alouatta
           belzebul GN=PROP1 PE=3 SV=1
          Length = 226

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)
 Frame = -1

Query: 248 YPKGGPFHERGNTALSVALPHQHR---MDFGPFPCGHAPLAPP 129
           +P    F  + +T  + ALPHQ         P P GH P  PP
Sbjct: 169 HPYSHAFPSQPSTGSTFALPHQSEDWYPTLHPAPAGHLPCPPP 211
tr_hit_id Q4S625
Definition tr|Q4S625|Q4S625_TETNG Chromosome 9 SCAF14729, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 43
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914102|Adiantum capillus-veneris mRNA, clone:
YMU001_000039_H05.
         (320 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4S625|Q4S625_TETNG Chromosome 9 SCAF14729, whole genome shot...    35   1.9  
tr|B8BD74|B8BD74_ORYSI Putative uncharacterized protein OS=Oryza...    34   3.2  

>tr|Q4S625|Q4S625_TETNG Chromosome 9 SCAF14729, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00023480001 PE=4 SV=1
          Length = 778

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +2

Query: 143 AHARMGMVRSPY-DADVVVRPKGLCSHARERGPLLGTKPPPNG 268
           A   +G  RS + D DV   P+G   H R RG  L  KPP NG
Sbjct: 133 AREELGQYRSAFGDLDVAQLPEGTPDHGRSRGAELLLKPPQNG 175


>tr|B8BD74|B8BD74_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_30502 PE=4 SV=1
          Length = 389

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
 Frame = -3

Query: 261 GGGLVPKRG-PLSRAWEHSPFGRTTTSASYGL--RTIPMRACATSTSLHRPKQARHLRIH 91
           GGG     G P+ R    SP+GR + S    +  R +PM + A+ TS+  P+QA  L +H
Sbjct: 83  GGGYCHAAGSPIKRERTRSPWGRRSPSPELPMAPRVLPMLSLASLTSVTVPQQASPLVVH 142