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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914120
Clone id YMU001_000042_B02
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AACTGGAAGAATTTGCGGCCGCAGGACGTCGATGTACACACAAAGGAAGACAAGAAGCAA
CATAGTATTCAGAATATTGTTCAGCACACTGTGAGATAGTTGCATAGTTACGGGAAAGAA
GATAAGAATGCAATTCTTCAAGGTGTTTTCAATGATGATAGAATCTTGCCATTCTGTGAA
GATTTTGTATCTTCGTGCAAATGGCCTTATCTCTGCACTCAAGGTCTCCTTACAGGAATT
AAAGATTCCAAAATCATATGACGAGATGTTTTTAAAACGAAGCACATTTAGCATGCTGGT
GAATGGATTACTGCATGATAATGGGAGCCAAGGTAGAGGTGTTACTCTACATAAAGTGGC
AAAGCTATTAAATGTTCATCCAAGGAATTTATATTCAGCTTTGGGTAGACTTGACAGTGA
TTCTATTTCAAGTACGTTGAGGTTCGACTTATGCAAAAGGAAGTGTGAAAATGTTGGGTC
CTTATCGGAGGAATTGAAGCAGACAATTATTACATCTTGGATAGAGCACAGTAGGGTGTC
TCCAAA
■■Homology search results ■■ -
sp_hit_id Q9WC60
Definition sp|Q9WC60|ENV_HV1S2 Envelope glycoprotein gp160 OS=Human immunodeficiency virus type 1 (isolate SE9280 group M subtype J)
Align length 76
Score (bit) 33.1
E-value 0.81
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914120|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_B02.
         (520 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9WC60|ENV_HV1S2 Envelope glycoprotein gp160 OS=Human immunod...    33   0.81 
sp|Q5IS41|NCAN_PANTR Neurocan core protein OS=Pan troglodytes GN...    32   1.8  
sp|O14594|NCAN_HUMAN Neurocan core protein OS=Homo sapiens GN=NC...    32   1.8  
sp|Q8CIQ6|MTR1B_MOUSE Melatonin receptor type 1B OS=Mus musculus...    32   2.4  
sp|P06337|IGHM_MESAU Ig mu chain C region OS=Mesocricetus auratu...    31   4.0  
sp|O74447|YCG2_SCHPO Uncharacterized protein C16C4.02c OS=Schizo...    30   5.2  
sp|O15335|CHAD_HUMAN Chondroadherin OS=Homo sapiens GN=CHAD PE=2...    30   5.3  
sp|A0B8B0|PYRH_METTP Uridylate kinase OS=Methanosaeta thermophil...    30   6.8  

>sp|Q9WC60|ENV_HV1S2 Envelope glycoprotein gp160 OS=Human
           immunodeficiency virus type 1 (isolate SE9280 group M
           subtype J) GN=env PE=3 SV=1
          Length = 848

 Score = 33.1 bits (74), Expect = 0.81
 Identities = 26/76 (34%), Positives = 40/76 (52%)
 Frame = -1

Query: 322 RVTPLPWLPLSCSNPFTSMLNVLRFKNISSYDFGIFNSCKETLSAEIRPFARRYKIFTEW 143
           ++TPL  + L+CSN  TS  N     ++SS D  I  +C   ++ EIR   ++       
Sbjct: 117 KITPL-CVTLNCSN-ITSNSNTTSNSSVSSPD--IMTNCSFNITTEIRNKRKQEYALFYR 172

Query: 142 QDSIIIENTLKNCILI 95
           QD + I++  KN ILI
Sbjct: 173 QDVVPIDSNNKNYILI 188


>sp|Q5IS41|NCAN_PANTR Neurocan core protein OS=Pan troglodytes GN=NCAN
            PE=2 SV=1
          Length = 1321

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 188  RDKAICTKIQNLHRMARFYHH*KHLEELHSY 96
            R + +CTK +  HRM R +HH +H  + H +
Sbjct: 1266 RPQIVCTKPRRSHRMRRHHHHHQHHHQHHHH 1296


>sp|O14594|NCAN_HUMAN Neurocan core protein OS=Homo sapiens GN=NCAN
            PE=2 SV=3
          Length = 1321

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -3

Query: 188  RDKAICTKIQNLHRMARFYHH*KHLEELHSY 96
            R + +CTK +  HRM R +HH +H  + H +
Sbjct: 1266 RPQIVCTKPRRSHRMRRHHHHHQHHHQHHHH 1296


>sp|Q8CIQ6|MTR1B_MOUSE Melatonin receptor type 1B OS=Mus musculus
           GN=Mtnr1b PE=2 SV=1
          Length = 364

 Score = 31.6 bits (70), Expect = 2.4
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
 Frame = -1

Query: 304 WLPLSCS------NPFTSMLNVLRFKNISSYDFGIFNSCKETLSAEI--RPFARRYK--I 155
           W PL+C       NP    L V     ++SY    FNSC   +   +  + F R YK  +
Sbjct: 264 WAPLNCIGLAVAINPEAMALQVPEGLFVTSYFLAYFNSCLNAIVYGLLNQNFRREYKRIL 323

Query: 154 FTEWQDSIIIENTLKNCI 101
              W     I++  K+C+
Sbjct: 324 LAIWNTRRCIQHASKHCL 341


>sp|P06337|IGHM_MESAU Ig mu chain C region OS=Mesocricetus auratus
           PE=4 SV=2
          Length = 454

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
 Frame = +3

Query: 204 LQELKIPKSYDEMFLKRS-TFSMLVNGL-----LHDNGSQGRGVTLHKVAKLLNVHPRNL 365
           +Q   IP S+  +FL +S T + LV  L     L+ + S   G  L    KL   HP   
Sbjct: 223 IQAFPIPPSFVGIFLNKSATLTCLVTNLATYDTLNISWSSRSGEPLETKTKLTESHPNGT 282

Query: 366 YSALG 380
           +SA+G
Sbjct: 283 FSAIG 287


>sp|O74447|YCG2_SCHPO Uncharacterized protein C16C4.02c
           OS=Schizosaccharomyces pombe GN=SPCC16C4.02c PE=1 SV=1
          Length = 548

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = +3

Query: 252 RSTFSMLVN--GLLHDNGSQGRGVTLHKVAKLLNVHPRNLYSALGRLD 389
           R +  +L N   LLH      + V+L  +AKLLN HP  ++    R+D
Sbjct: 60  RGSMELLENCFSLLHAQDDTSKFVSLTMLAKLLNDHPNLIFKCWERMD 107


>sp|O15335|CHAD_HUMAN Chondroadherin OS=Homo sapiens GN=CHAD PE=2
           SV=2
          Length = 359

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 24/83 (28%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
 Frame = -1

Query: 448 TFSHFLLHKSNLNVLEIESLSSLPKAEYKFLG*TFNSFATLCRVTPLP-WLPLSCSNPFT 272
           T  H  L  + LN L     S+ P    + L  T N +   C++  L  WL    S P  
Sbjct: 269 TLKHVHLENNRLNQLP----SNFPFDSLETLALTNNPWKCTCQLRGLRRWLEAKASRPDA 324

Query: 271 SMLNVLRFKNISSYDFGIFNSCK 203
           +  +  +FK     D   F SCK
Sbjct: 325 TCASPAKFKGQHIRDTDAFRSCK 347


>sp|A0B8B0|PYRH_METTP Uridylate kinase OS=Methanosaeta thermophila
           (strain DSM 6194 / PT) GN=pyrH PE=3 SV=1
          Length = 223

 Score = 30.0 bits (66), Expect = 6.8
 Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +3

Query: 141 CHSVKILYLRANG-LISALKVSLQELKIPKSYDEMFLKRSTFSMLVNGLLHDNGSQGRGV 317
           C S+ IL  R N  L++A        ++P+SYD+      T+ M+V       G    G 
Sbjct: 63  CDSIGILATRMNAALLAAALDGSAPFRVPESYDDAIEASKTYRMVV------MGGVSPGQ 116

Query: 318 TLHKVAKLLNVHPR 359
           T   VA LL  + R
Sbjct: 117 TTDAVAALLAEYTR 130
tr_hit_id B4MU98
Definition tr|B4MU98|B4MU98_DROWI GK15247 OS=Drosophila willistoni
Align length 92
Score (bit) 37.7
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914120|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_B02.
         (520 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4MU98|B4MU98_DROWI GK15247 OS=Drosophila willistoni GN=GK152...    38   0.34 
tr|A3JH02|A3JH02_9ALTE Putative uncharacterized protein OS=Marin...    35   2.9  
tr|B6MIH0|B6MIH0_BRAFL Putative uncharacterized protein OS=Branc...    35   2.9  
tr|Q228U4|Q228U4_TETTH Putative uncharacterized protein OS=Tetra...    34   3.8  
tr|Q8D5P9|Q8D5P9_VIBVU Transcriptional regulator OS=Vibrio vulni...    34   5.0  
tr|Q7MCQ6|Q7MCQ6_VIBVY Transcriptional regulator OS=Vibrio vulni...    34   5.0  
tr|Q7V595|Q7V595_PROMM CpeS homolog, phycoerythrin linker-protei...    33   6.5  
tr|Q7RT32|Q7RT32_PLAYO Putative uncharacterized protein PY00169 ...    33   8.5  

>tr|B4MU98|B4MU98_DROWI GK15247 OS=Drosophila willistoni GN=GK15247
           PE=4 SV=1
          Length = 379

 Score = 37.7 bits (86), Expect = 0.34
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 3/92 (3%)
 Frame = -1

Query: 280 PFTSMLNVL--RFKNISSYDFGIFNSCKETLSAEIRPFARRYKIFTEWQD-SIIIENTLK 110
           P    LNV   RF  ++S  +G FNS K+T++A     A  + +  EW+D SI ++NT+ 
Sbjct: 284 PARKCLNVWTRRFGVLNSTLYGSFNSAKQTITA----LALLHNMAMEWKDPSIDMDNTIS 339

Query: 109 NCILIFFPVTMQLSHSVLNNILNTMLLLVFLC 14
           +C     P   Q + +V +    + +   F C
Sbjct: 340 HCTPTMSPSLDQTAQAVEDRNRRSFIKTHFTC 371


>tr|A3JH02|A3JH02_9ALTE Putative uncharacterized protein
           OS=Marinobacter sp. ELB17 GN=MELB17_00250 PE=4 SV=1
          Length = 1516

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 39/139 (28%), Positives = 60/139 (43%), Gaps = 5/139 (3%)
 Frame = +3

Query: 93  KIRMQFFKVFSMMIESCHSVKILYLRANGLISALKVSLQ---ELKIPKSYDEMFLKRSTF 263
           +I  Q F++ S   +     K  + + NG + A KV++    EL +P    E+FL  ST 
Sbjct: 363 RIIHQAFQIASRDSDYPACFKAFWKQFNGTVPACKVAIDTNGELHVPS---EIFLPSST- 418

Query: 264 SMLVNGLLHDNGSQGRGVTLHKVAKLLNVHPRNLYSALG--RLDSDSISSTLRFDLCKRK 437
               +G L      G  V   K++       RN  S +G   L  D + + LR +LC   
Sbjct: 419 -RFSDGQLSALNRLGANVVSEKLSPY-----RNTLSKIGVPTLRLDPLIAILRANLCNIT 472

Query: 438 CENVGSLSEELKQTIITSW 494
            E+  +  E LKQ  +  W
Sbjct: 473 GESCRTTEEMLKQFWVPLW 491


>tr|B6MIH0|B6MIH0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_82802 PE=4 SV=1
          Length = 236

 Score = 34.7 bits (78), Expect = 2.9
 Identities = 28/100 (28%), Positives = 52/100 (52%), Gaps = 1/100 (1%)
 Frame = +3

Query: 123 SMMIESCHSVKILYLRANGLISALKVSLQEL-KIPKSYDEMFLKRSTFSMLVNGLLHDNG 299
           + +I++  +V  +YLR +G+ SAL    QE+ +  +   +MF K    S+ +  L+    
Sbjct: 52  TQLIQAFSTVGFVYLRNHGIPSALLWPSQEMPEFQQVTLQMFDKSRQLSLRIIELM---- 107

Query: 300 SQGRGVTLHKVAKLLNVHPRNLYSALGRLDSDSISSTLRF 419
             GRG+ +  +  LL++H     S +G   + S+  TLR+
Sbjct: 108 --GRGLNIQDMPSLLSMH-----SMMGTGPNGSVMRTLRY 140


>tr|Q228U4|Q228U4_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01498810 PE=4
           SV=1
          Length = 220

 Score = 34.3 bits (77), Expect = 3.8
 Identities = 19/65 (29%), Positives = 34/65 (52%)
 Frame = -1

Query: 286 SNPFTSMLNVLRFKNISSYDFGIFNSCKETLSAEIRPFARRYKIFTEWQDSIIIENTLKN 107
           SN F  ++ +L+  N  + D+   N   + L     PF ++Y+I+  +Q+SI+I +   N
Sbjct: 134 SNKFYPIIIILKLVNELTLDYDDANDEDDELIVNSHPFPKKYQIYLYFQNSIMIFDEKIN 193

Query: 106 CILIF 92
             L F
Sbjct: 194 AELTF 198


>tr|Q8D5P9|Q8D5P9_VIBVU Transcriptional regulator OS=Vibrio
           vulnificus GN=VV2_0859 PE=4 SV=1
          Length = 343

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -1

Query: 481 IVCFNSSDKDPTFSHFLLHKSNLNVLEIESLSSLPK 374
           +V F SS  D T  H LLH +N  VLEI  LSS P+
Sbjct: 130 VVLFGSSHSDRT--HQLLHSANTQVLEIAELSSEPR 163


>tr|Q7MCQ6|Q7MCQ6_VIBVY Transcriptional regulator OS=Vibrio
           vulnificus (strain YJ016) GN=VVA1330 PE=4 SV=1
          Length = 357

 Score = 33.9 bits (76), Expect = 5.0
 Identities = 19/36 (52%), Positives = 22/36 (61%)
 Frame = -1

Query: 481 IVCFNSSDKDPTFSHFLLHKSNLNVLEIESLSSLPK 374
           +V F SS  D T  H LLH +N  VLEI  LSS P+
Sbjct: 144 VVLFGSSHSDRT--HQLLHSANTQVLEIAELSSEPR 177


>tr|Q7V595|Q7V595_PROMM CpeS homolog, phycoerythrin linker-proteins
           region OS=Prochlorococcus marinus (strain MIT 9313)
           GN=cpeS PE=4 SV=1
          Length = 177

 Score = 33.5 bits (75), Expect = 6.5
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
 Frame = -1

Query: 277 FTSMLNVLRFKNISSYDFGIFNSCKETLSAE---IRPFARRYKIFTEWQDSIIIENTLKN 107
           F  +L+ +R + ++S D  +    K T S     + PF   ++  ++W+ ++  E T  +
Sbjct: 28  FEEVLSEIRIQKVNSEDPEVIQLLKSTTSHNSMPVSPFKMEWQAESDWEPNVKSEVTSGS 87

Query: 106 CILIFFPVT 80
           C+LI  P T
Sbjct: 88  CLLIPIPKT 96


>tr|Q7RT32|Q7RT32_PLAYO Putative uncharacterized protein PY00169
           OS=Plasmodium yoelii yoelii GN=PY00169 PE=4 SV=1
          Length = 184

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 21/82 (25%), Positives = 44/82 (53%)
 Frame = -1

Query: 265 LNVLRFKNISSYDFGIFNSCKETLSAEIRPFARRYKIFTEWQDSIIIENTLKNCILIFFP 86
           +N+L + NI S+   +  +  E L+ +I  +     +F+E   + + ENT+   + +FF 
Sbjct: 1   MNILNYNNILSFQKFVLKNNFEELTQKISIYE---SLFSE---NCLDENTVTMLLSVFFF 54

Query: 85  VTMQLSHSVLNNILNTMLLLVF 20
           + + L+ ++   ILN + L+ F
Sbjct: 55  INICLNDNIYKRILNYIYLINF 76