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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914122
Clone id YMU001_000042_B04
Library
Length 301
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_B04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTCACCTCAAGCCCCTCAATCAGTTGAAGACACCTGATGCACCAGAACCATGGACGAGG
TCTCCTACAAAATCTGAAATGGACTCTCCCCCAGCTTCTTGGCGCTTAGCTTCAGCAGAA
TCTGGAACTGGGAAGGATGAAGCTCTTAAAGCAAAAATACAGCTTCAGCCAATCCCAGAG
GCTCTTGACTTTGACCGAGGTCTTTTGCTTGGTATACAAGGGATCCAGACATTGTTGAAT
GCTAAAGGATCACCAGTGATTGTAGGCATCGGTAAACTTTTTACATTTAATGTTGAGCAG
C
■■Homology search results ■■ -
sp_hit_id Q0D8N0
Definition sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=Oryza sativa subsp. japonica
Align length 59
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914122|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_B04.
         (301 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53 OS=O...    33   0.34 
sp|Q2KWY3|LEPA_BORA1 GTP-binding protein lepA OS=Bordetella aviu...    31   1.7  
sp|Q824H2|KCY_CHLCV Cytidylate kinase OS=Chlamydophila caviae GN...    30   2.9  
sp|Q4AC94|C2CD3_HUMAN C2 domain-containing protein 3 OS=Homo sap...    30   2.9  
sp|Q5LSV2|RRF_SILPO Ribosome-recycling factor OS=Silicibacter po...    30   3.8  
sp|Q9ZT17|AGP3_ARATH Classical arabinogalactan protein 3 OS=Arab...    30   3.8  
sp|A5FZ47|RL25_ACICJ 50S ribosomal protein L25 OS=Acidiphilium c...    30   4.9  
sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taur...    30   4.9  
sp|Q6DRG7|MYPT1_DANRE Protein phosphatase 1 regulatory subunit 1...    30   4.9  
sp|A2VE02|K1462_BOVIN Uncharacterized protein KIAA1462 homolog O...    30   4.9  
sp|Q3AML2|RECF_SYNSC DNA replication and repair protein recF OS=...    29   6.4  
sp|A8LK37|RRF_DINSH Ribosome-recycling factor OS=Dinoroseobacter...    29   8.4  
sp|A5VB59|LEPA_SPHWW GTP-binding protein lepA OS=Sphingomonas wi...    29   8.4  

>sp|Q0D8N0|RH53_ORYSJ DEAD-box ATP-dependent RNA helicase 53
           OS=Oryza sativa subsp. japonica GN=Os07g0143700 PE=2
           SV=2
          Length = 602

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
 Frame = +1

Query: 13  PLNQLKTPDAPEPWTR-----SPTKSEMDSPPASWRLASAESGTGKDEALK-AKIQLQP 171
           PL+  + P APEP  R     SP+     S PASW    A +  G D+ L+ A++ + P
Sbjct: 35  PLDPCRGPAAPEPPRRRAFHGSPSPLGFRSTPASWSSPEAGAAVGGDDGLEVARLGISP 93


>sp|Q2KWY3|LEPA_BORA1 GTP-binding protein lepA OS=Bordetella avium
           (strain 197N) GN=lepA PE=3 SV=1
          Length = 597

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = +1

Query: 7   LKPLNQLKTPDAPEPWTRSPTKSEMDSPPASWRLASAESGTGKDEALKAKIQLQPIPE 180
           L  LN++  P A     R   +  +    +   LASA++G G DE L+A +   P PE
Sbjct: 127 LAVLNKMDLPQADPEGARQEVEDVIGIDASDAVLASAKTGMGIDEILEAIVARVPSPE 184


>sp|Q824H2|KCY_CHLCV Cytidylate kinase OS=Chlamydophila caviae
           GN=cmk PE=3 SV=1
          Length = 216

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 14/63 (22%)
 Frame = +1

Query: 46  EPWTRSPTKSEMDSPPASW--------------RLASAESGTGKDEALKAKIQLQPIPEA 183
           EPW   P K  +D+PP S+              +L SAE GT   E   A  +L  +PE 
Sbjct: 45  EPWQALPIKELIDNPPFSFSFISGQPLEAFLEGQLLSAELGT--QEVANAASKLSQLPEV 102

Query: 184 LDF 192
             F
Sbjct: 103 RSF 105


>sp|Q4AC94|C2CD3_HUMAN C2 domain-containing protein 3 OS=Homo
           sapiens GN=C2CD3 PE=1 SV=3
          Length = 2353

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/61 (31%), Positives = 28/61 (45%)
 Frame = +1

Query: 10  KPLNQLKTPDAPEPWTRSPTKSEMDSPPASWRLASAESGTGKDEALKAKIQLQPIPEALD 189
           K    L  P+   P   +P  S   + PAS  L +  +GT K+ AL   + L  +P+  D
Sbjct: 758 KKAQNLVLPNRKSPSPVAPHPSTFVATPASHNLVNQTNGTTKESALLLHVLLM-VPDGKD 816

Query: 190 F 192
           F
Sbjct: 817 F 817


>sp|Q5LSV2|RRF_SILPO Ribosome-recycling factor OS=Silicibacter
           pomeroyi GN=frr PE=3 SV=1
          Length = 187

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 7   LKPLNQLKTPDAPEPWTRSPTKSEMD-SPPASWRLASAESGTGKDEALKAKIQLQPIPE 180
           + P+NQ+ T + PEP  R  T +  D S       A  ESG G +  L   I + PIPE
Sbjct: 51  MTPINQIGTVNVPEP--RMVTINVWDKSMVGKVEKAIRESGLGINPQLNGTIIMLPIPE 107


>sp|Q9ZT17|AGP3_ARATH Classical arabinogalactan protein 3
           OS=Arabidopsis thaliana GN=AGP3 PE=2 SV=1
          Length = 139

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = +1

Query: 31  TPDAPEPWTRSPTKSEMDSPPASWRLASAESG 126
           TP    P T SPT S + SPP  + LA   SG
Sbjct: 68  TPPTVSPPTTSPTTSPVASPPKPYALAPGPSG 99


>sp|A5FZ47|RL25_ACICJ 50S ribosomal protein L25 OS=Acidiphilium
           cryptum (strain JF-5) GN=rplY PE=3 SV=1
          Length = 217

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
 Frame = +1

Query: 103 RLASAESGTGKDEALKAKIQLQPI---PEALDFDRXXXXXXXXXXXXXNAKGSPVIVGIG 273
           RL   E+ +GK  AL   IQL P+   PE +DF R             N     + VG+ 
Sbjct: 62  RLYEIETASGKARALMRDIQLHPVTDQPEHVDFQRLAAGEPVRVAVNVNFLNELISVGMK 121

Query: 274 KLFTFNV 294
           +    NV
Sbjct: 122 RGGVLNV 128


>sp|O77788|NFM_BOVIN Neurofilament medium polypeptide OS=Bos taurus
           GN=NEFM PE=1 SV=3
          Length = 926

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +1

Query: 28  KTPDAPEPWTRSPTKSEMDSPPASWRLASAESGTGKDEALKAKIQLQPIPE 180
           K+P A  P  +SPT    ++     +  +A+S T K  A K+     P+ E
Sbjct: 649 KSPTAKSPVAKSPTAKSPEAKSPEAKSPTAKSPTAKSPAAKSPAPKSPVEE 699


>sp|Q6DRG7|MYPT1_DANRE Protein phosphatase 1 regulatory subunit 12A
           OS=Danio rerio GN=ppp1r12a PE=2 SV=2
          Length = 1049

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 7/46 (15%)
 Frame = +1

Query: 13  PLNQLKTPDAPEPWTRSPT-------KSEMDSPPASWRLASAESGT 129
           P NQ+ TP +P     +P        +   D  PASWRL   ++G+
Sbjct: 404 PSNQVTTPTSPTKKVSTPAGKLSPKEEDRKDESPASWRLGLRKTGS 449


>sp|A2VE02|K1462_BOVIN Uncharacterized protein KIAA1462 homolog OS=Bos
            taurus PE=2 SV=1
          Length = 1305

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 17/48 (35%), Positives = 22/48 (45%)
 Frame = +1

Query: 34   PDAPEPWTRSPTKSEMDSPPASWRLASAESGTGKDEALKAKIQLQPIP 177
            P +P PW      S   SPP SW    AE G  + E   A++ + P P
Sbjct: 889  PRSPRPWQAEGRGSVWLSPPGSW---IAEDGDREVEDRVAQLAVSPRP 933
tr_hit_id A9TVB0
Definition tr|A9TVB0|A9TVB0_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 91
Score (bit) 64.3
E-value 3.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914122|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_B04.
         (301 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TVB0|A9TVB0_PHYPA Predicted protein (Fragment) OS=Physcomit...    64   3e-09
tr|Q9ZVF8|Q9ZVF8_ARATH Putative uncharacterized protein At2g0146...    59   1e-07
tr|A7P3M6|A7P3M6_VITVI Chromosome chr1 scaffold_5, whole genome ...    59   2e-07
tr|A5BL07|A5BL07_VITVI Putative uncharacterized protein OS=Vitis...    55   2e-06
tr|Q7XLI1|Q7XLI1_ORYSA OSJNBa0079F16.16 protein OS=Oryza sativa ...    47   4e-04
tr|Q0JEG1|Q0JEG1_ORYSJ Os04g0280200 protein OS=Oryza sativa subs...    47   4e-04
tr|B8AS01|B8AS01_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A3ARW7|A3ARW7_ORYSJ Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|B7JYX4|B7JYX4_SYNP8 SpoIID/LytB domain protein OS=Synechococc...    36   0.83 
tr|B4C4K9|B4C4K9_9CHRO SpoIID/LytB domain protein OS=Cyanothece ...    35   1.4  
tr|B8B7E6|B8B7E6_ORYSI Putative uncharacterized protein OS=Oryza...    33   5.4  
tr|B6MN20|B6MN20_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  

>tr|A9TVB0|A9TVB0_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_151318 PE=4 SV=1
          Length = 866

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 38/91 (41%), Positives = 46/91 (50%)
 Frame = +1

Query: 1   LHLKPLNQLKTPDAPEPWTRSPTKSEMDSPPASWRLASAESGTGKDEALKAKIQLQPIPE 180
           + LK L+ LK  D  E WTRSPTKS++D    SW L ++  G      L     L P+ E
Sbjct: 418 IRLKQLSPLKPSDTLETWTRSPTKSDIDPVIGSWHLTTSVRG------LDHIALLLPMSE 471

Query: 181 ALDFDRXXXXXXXXXXXXXNAKGSPVIVGIG 273
             DFDR             NA+G PVIVGIG
Sbjct: 472 TFDFDRGLLLAVQAVQTLLNARGPPVIVGIG 502


>tr|Q9ZVF8|Q9ZVF8_ARATH Putative uncharacterized protein At2g01460
           OS=Arabidopsis thaliana GN=At2g01460 PE=2 SV=1
          Length = 723

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
 Frame = +1

Query: 37  DAPEPWTRSPTKSEMDSPPASWRLA------SAESGTGKDEALKAKIQLQPIPEALDFDR 198
           D  +PWTRSPTKS+M+   A+W         S  S    D + +  ++L P+P++ D DR
Sbjct: 442 DLSQPWTRSPTKSQMEPMVATWHFTSYDPPHSVSSVVATDSSFRDNMRLVPMPDSYDLDR 501

Query: 199 XXXXXXXXXXXXXNAKGSPVIVGIG 273
                          KG PVIVGIG
Sbjct: 502 GLLLSVQAIQALLENKGPPVIVGIG 526


>tr|A7P3M6|A7P3M6_VITVI Chromosome chr1 scaffold_5, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00030501001
           PE=4 SV=1
          Length = 952

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 32/96 (33%), Positives = 47/96 (48%), Gaps = 5/96 (5%)
 Frame = +1

Query: 1   LHLKPLNQLKTPDAPEPWTRSPTKSEMDSPPASWRLAS-----AESGTGKDEALKAKIQL 165
           + + P    +  D  +PWTRSPTKS+M+   A+W   S     A+S      + +  ++L
Sbjct: 428 IRITPNLVTRLEDLSQPWTRSPTKSKMEPVLATWHFISPDPLHADSSVTDPSSFRDTLRL 487

Query: 166 QPIPEALDFDRXXXXXXXXXXXXXNAKGSPVIVGIG 273
            P+P++ D DR               KG PVIVGIG
Sbjct: 488 APMPDSYDLDRGLLLSVQAIQALLENKGLPVIVGIG 523


>tr|A5BL07|A5BL07_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_036875 PE=4 SV=1
          Length = 1066

 Score = 54.7 bits (130), Expect = 2e-06
 Identities = 34/106 (32%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
 Frame = +1

Query: 1   LHLKPLNQLKTPDAPEPWTRSPTKSEMDSPPASWRLASAE------SGTGKD-------- 138
           + + P    +  D  +PWTRSPTKS+M+   A+W   S +      S TG D        
Sbjct: 585 IRITPNLVTRLEDLSQPWTRSPTKSKMEPVLATWHFISPDPLHADSSVTGLDFSHEATTD 644

Query: 139 -EALKAKIQLQPIPEALDFDRXXXXXXXXXXXXXNAKGSPVIVGIG 273
             + +  ++L P+P++ D DR               KG PVIVGIG
Sbjct: 645 PSSFRDTLRLAPMPDSYDLDRGLLLSVQAIQALLENKGLPVIVGIG 690


>tr|Q7XLI1|Q7XLI1_ORYSA OSJNBa0079F16.16 protein OS=Oryza sativa
           GN=OSJNBa0079F16.16 PE=4 SV=1
          Length = 1148

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 37  DAPEPWTRSPTKSEMDSPPA--SWRLASAESGTGKDEALKAKIQLQPIPEALDFDRXXXX 210
           D  +PWTRSP K + D  P    W+         +D +  + IQL P+P++ D DR    
Sbjct: 558 DFAQPWTRSPPK-KFDQEPVMGKWQF-------NQDSSSGSNIQLAPLPDSYDLDRGLLL 609

Query: 211 XXXXXXXXXNAKGSPVIVGIG 273
                      KG PVIVGIG
Sbjct: 610 SVQAIQALLENKGFPVIVGIG 630


>tr|Q0JEG1|Q0JEG1_ORYSJ Os04g0280200 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0280200 PE=4 SV=1
          Length = 951

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 37  DAPEPWTRSPTKSEMDSPPA--SWRLASAESGTGKDEALKAKIQLQPIPEALDFDRXXXX 210
           D  +PWTRSP K + D  P    W+         +D +  + IQL P+P++ D DR    
Sbjct: 491 DFAQPWTRSPPK-KFDQEPVMGKWQF-------NQDSSSGSNIQLAPLPDSYDLDRGLLL 542

Query: 211 XXXXXXXXXNAKGSPVIVGIG 273
                      KG PVIVGIG
Sbjct: 543 SVQAIQALLENKGFPVIVGIG 563


>tr|B8AS01|B8AS01_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15188 PE=4 SV=1
          Length = 1085

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 37  DAPEPWTRSPTKSEMDSPPA--SWRLASAESGTGKDEALKAKIQLQPIPEALDFDRXXXX 210
           D  +PWTRSP K + D  P    W+         +D +  + IQL P+P++ D DR    
Sbjct: 454 DFAQPWTRSPPK-KFDQEPVMGKWQF-------NQDSSSGSNIQLAPLPDSYDLDRGLLL 505

Query: 211 XXXXXXXXXNAKGSPVIVGIG 273
                      KG PVIVGIG
Sbjct: 506 SVQAIQALLENKGFPVIVGIG 526


>tr|A3ARW7|A3ARW7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_013539 PE=4 SV=1
          Length = 1060

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 29/81 (35%), Positives = 38/81 (46%), Gaps = 2/81 (2%)
 Frame = +1

Query: 37  DAPEPWTRSPTKSEMDSPPA--SWRLASAESGTGKDEALKAKIQLQPIPEALDFDRXXXX 210
           D  +PWTRSP K + D  P    W+         +D +  + IQL P+P++ D DR    
Sbjct: 470 DFAQPWTRSPPK-KFDQEPVMGKWQF-------NQDSSSGSNIQLAPLPDSYDLDRGLLL 521

Query: 211 XXXXXXXXXNAKGSPVIVGIG 273
                      KG PVIVGIG
Sbjct: 522 SVQAIQALLENKGFPVIVGIG 542


>tr|B7JYX4|B7JYX4_SYNP8 SpoIID/LytB domain protein OS=Synechococcus
           sp. (strain PCC 8801 / RF-1) GN=PCC8801_2014 PE=4 SV=1
          Length = 378

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +1

Query: 7   LKPLNQLKTPDAPEPWTRSPTKSEMDSPPASWRLASAESG 126
           L PL+QL+TPD PEP   S T S++  P    R  +  +G
Sbjct: 49  LPPLSQLQTPDVPEPSLNSTTGSQLQKPRPKQRPETPSTG 88


>tr|B4C4K9|B4C4K9_9CHRO SpoIID/LytB domain protein OS=Cyanothece sp.
           PCC 8802 GN=Cyan8802DRAFT_3976 PE=4 SV=1
          Length = 378

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 7   LKPLNQLKTPDAPEPWTRSPTKSEMDSPPASWRLASAESG 126
           L PL+Q++TPD PEP   S T S++  P    R  +  +G
Sbjct: 49  LPPLSQIQTPDVPEPSLNSTTGSQLQKPRPKQRPETPSTG 88