BP914137 |
Clone id |
YMU001_000042_C12 |
Library |
YMU01 |
Length |
377 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000042_C12. |
Accession |
BP914137 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGAGTTCGCGGCCTTTTCCTTTTTTCTGCTTTGCATGGGAACCATGTTTCCTGGCCCCAT CTTTTCCCTTCACATGTGAGAATTTTCTTACACCTGCACCCTGTGTAGACTTGTGTTCCT TCAATGGTTTTCCTGCTCTTTCATGATCTTCATCACTGCATAAGTCAGTGGCCAGATCAT TCTCACTCAGTTGACCCCTTTTAATCTTTCGTAGCAGACGATACTCTCTCTCCATTTCCA AGTCGTCTTCTAAAGTTTGCGAGGCCTTCCGTTTCTTGCCAGTCTCCCGCTTCTCCTTCC TGTTAGAATCTTTGCCATTCTGCTTTTGCTGATGACTGTGCCGCAAAGGCCCAGCCGTTA CCTCCTGCTTTTTAGCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q761Z9 |
Definition |
sp|Q761Z9|RH18_ORYSJ DEAD-box ATP-dependent RNA helicase 18 OS=Oryza sativa subsp. japonica |
Align length |
86 |
Score (bit) |
42.7 |
E-value |
0.0006 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B8ADF1 |
Definition |
tr|B8ADF1|B8ADF1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica |
Align length |
86 |
Score (bit) |
43.9 |
E-value |
0.004 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914137|Adiantum capillus-veneris mRNA, clone: YMU001_000042_C12. (377 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B8ADF1|B8ADF1_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.004 tr|A2WL22|A2WL22_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.004 tr|B7EFB7|B7EFB7_ORYSJ cDNA clone:J013162N07, full insert sequen... 43 0.009 tr|A9S075|A9S075_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.020 tr|B5RI19|B5RI19_SALSA DEAD (Asp-Glu-Ala-Asp) box polypeptide 55... 39 0.098 tr|A7Q3P2|A7Q3P2_VITVI Chromosome chr13 scaffold_48, whole genom... 39 0.098 tr|B6SPG8|B6SPG8_MAIZE ATP-dependent rRNA helicase spb4 OS=Zea m... 38 0.22 tr|Q00VZ7|Q00VZ7_OSTTA DEAD/DEAH box helicase, putative (ISS) OS... 36 0.83 tr|B8BPM9|B8BPM9_ORYSI Putative uncharacterized protein OS=Oryza... 35 1.8 tr|B7ELR4|B7ELR4_ORYSJ cDNA clone:J033010C22, full insert sequen... 35 1.8 tr|A2X2W5|A2X2W5_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4 tr|B6MDM5|B6MDM5_BRAFL Putative uncharacterized protein (Fragmen... 35 2.4 tr|Q3MU92|Q3MU92_DANRE KARP-binding protein (Fragment) OS=Danio ... 34 4.1 tr|A2BE85|A2BE85_DANRE Novel protein similar to vertebrate centr... 34 4.1 tr|A5K8F5|A5K8F5_PLAVI Putative uncharacterized protein OS=Plasm... 34 4.1 tr|A0NBN6|A0NBN6_ANOGA AGAP006776-PA OS=Anopheles gambiae GN=AGA... 33 5.4 tr|Q21K59|Q21K59_SACD2 Alkyl hydroperoxide reductase/ Thiol spec... 33 7.0 tr|Q5AFK1|Q5AFK1_CANAL Putative uncharacterized protein CTR9 (Pu... 33 7.0 tr|Q7T1U3|Q7T1U3_FUGRU Tmc2-related protein 1 OS=Fugu rubripes P... 33 9.2 tr|Q53U37|Q53U37_SOLLC Putative uncharacterized protein OS=Solan... 33 9.2 tr|Q7K0X3|Q7K0X3_DROME CG2469, isoform A OS=Drosophila melanogas... 33 9.2 tr|Q4E5E2|Q4E5E2_TRYCR Putative uncharacterized protein OS=Trypa... 33 9.2 tr|Q4E1X1|Q4E1X1_TRYCR Putative uncharacterized protein OS=Trypa... 33 9.2 tr|O62235|O62235_CAEEL Protein F36F2.3a, partially confirmed by ... 33 9.2 tr|B4QLZ8|B4QLZ8_DROSI GD13607 OS=Drosophila simulans GN=GD13607... 33 9.2 tr|B4HVR4|B4HVR4_DROSE GM14398 OS=Drosophila sechellia GN=GM1439... 33 9.2 tr|A5K8P6|A5K8P6_PLAVI Cell cycle control protein, putative OS=P... 33 9.2
>tr|B8ADF1|B8ADF1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00527 PE=4 SV=1 Length = 648
Score = 43.9 bits (102), Expect = 0.004 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Frame = -2
Query: 265 ASQTLEDDLEMEREYRLLRKIKRGQLSEND----LATDLCSDEDHERAGKPLKEHKSTQG 98 A QT ED E+ EYRLL+K+KRG + E++ DED G + + +G Sbjct: 559 AVQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTGFGESDDEDSSDGGDSDLDERKERG 618
Query: 97 AGVRKFSHVKGK-DGARKHGSHAKQK 23 V K KGK G+R+ +KQK Sbjct: 619 NKVLKKIKQKGKAKGSRRFEGRSKQK 644
>tr|A2WL22|A2WL22_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00534 PE=4 SV=1 Length = 143
Score = 43.9 bits (102), Expect = 0.004 Identities = 31/86 (36%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Frame = -2
Query: 265 ASQTLEDDLEMEREYRLLRKIKRGQLSEND----LATDLCSDEDHERAGKPLKEHKSTQG 98 A QT ED E+ EYRLL+K+KRG + E++ DED G + + +G Sbjct: 54 AVQTKEDMDELTNEYRLLKKLKRGVIDEDEYEKLTGFGESDDEDSSDGGDSDLDERKERG 113
Query: 97 AGVRKFSHVKGK-DGARKHGSHAKQK 23 V K KGK G+R+ +KQK Sbjct: 114 NKVLKKIKQKGKAKGSRRFEGRSKQK 139
>tr|B7EFB7|B7EFB7_ORYSJ cDNA clone:J013162N07, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 647
Score = 42.7 bits (99), Expect = 0.009 Identities = 30/86 (34%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Frame = -2
Query: 265 ASQTLEDDLEMEREYRLLRKIKRGQLSEND----LATDLCSDEDHERAGKPLKEHKSTQG 98 A QT ED E+ EYRLL+K+KRG + E++ D+D G + + +G Sbjct: 558 AVQTKEDMDELANEYRLLKKLKRGVIDEDEYEKLTGFGESDDDDSSDGGDSDLDERKERG 617
Query: 97 AGVRKFSHVKGK-DGARKHGSHAKQK 23 V K KGK G+R+ +KQK Sbjct: 618 NKVLKKIKQKGKAKGSRRFEGRSKQK 643
>tr|A9S075|A9S075_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_122327 PE=3 SV=1 Length = 631
Score = 41.6 bits (96), Expect = 0.020 Identities = 18/28 (64%), Positives = 24/28 (85%) Frame = -2
Query: 259 QTLEDDLEMEREYRLLRKIKRGQLSEND 176 Q +EDD EM REYRLL+K+K+G LSE++ Sbjct: 538 QKVEDDEEMNREYRLLKKLKKGTLSESE 565
>tr|B5RI19|B5RI19_SALSA DEAD (Asp-Glu-Ala-Asp) box polypeptide 55 (Fragment) OS=Salmo salar PE=2 SV=1 Length = 606
Score = 39.3 bits (90), Expect = 0.098 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 5/84 (5%) Frame = -2
Query: 373 KKQEVTAGPLRHSHQQK-----QNGKDSNXXXXXXXXXXXKASQTLEDDLEMEREYRLLR 209 K++E A P RH+ + K +N KD + ED E+ ++ RLL+ Sbjct: 504 KREERAAAPKRHNDKNKAWSKQKNRKDRRRKTAAKRNRDEGSEMDDEDMKELLKDTRLLK 563
Query: 208 KIKRGQLSENDLATDLCSDEDHER 137 ++K+GQ+SE D + + +R Sbjct: 564 RLKKGQISEEDFEKQVTAGPKSQR 587
>tr|A7Q3P2|A7Q3P2_VITVI Chromosome chr13 scaffold_48, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029361001 PE=4 SV=1 Length = 117
Score = 39.3 bits (90), Expect = 0.098 Identities = 15/31 (48%), Positives = 26/31 (83%) Frame = -2
Query: 262 SQTLEDDLEMEREYRLLRKIKRGQLSENDLA 170 +QT+ED+ ++ REYRLL+K+K+G + E++ A Sbjct: 78 AQTIEDEDDLAREYRLLKKLKKGTIDESEFA 108
>tr|B6SPG8|B6SPG8_MAIZE ATP-dependent rRNA helicase spb4 OS=Zea mays PE=2 SV=1 Length = 641
Score = 38.1 bits (87), Expect = 0.22 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Frame = -2
Query: 259 QTLEDDLEMEREYRLLRKIKRGQLSENDL-ATDLCSDEDHERA---GKPLKEHKSTQGAG 92 QT ED E+ EYRLL+K+KRG + E + D D E + G L E K A Sbjct: 555 QTKEDLDELAHEYRLLKKLKRGDIDEEEYEKLTGFGDSDGEASDGDGSNLDERKKGNKAQ 614
Query: 91 VRKFSHVKGKDGARKHGSHAK 29 + K K G++K +K Sbjct: 615 KKPKQRGKCKSGSKKFEGRSK 635
>tr|Q00VZ7|Q00VZ7_OSTTA DEAD/DEAH box helicase, putative (ISS) OS=Ostreococcus tauri GN=Ot14g02150 PE=3 SV=1 Length = 686
Score = 36.2 bits (82), Expect = 0.83 Identities = 17/53 (32%), Positives = 35/53 (66%) Frame = -2
Query: 259 QTLEDDLEMEREYRLLRKIKRGQLSENDLATDLCSDEDHERAGKPLKEHKSTQ 101 ++LED EME +YR L+K+K+G+++E + ++ +E+ ++ K +K +Q Sbjct: 638 ESLEDIEEMEDDYRALKKLKKGKMTEEEFDMEIGFEEEKPKS----KTNKKSQ 686
>tr|B8BPM9|B8BPM9_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38328 PE=4 SV=1 Length = 802
Score = 35.0 bits (79), Expect = 1.8 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%) Frame = -2
Query: 253 LEDDLEMEREYRLLRKIKRGQLSENDLATDLCSDED---HERAGKPLKEHKSTQGAGVRK 83 L++ ERE L RK +R +E ++ D DE+ + GK K+ +S R+ Sbjct: 665 LKEKKRREREKNLPRKKRRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRR 724
Query: 82 FSHVK--GKDGA----RKHGSHAKQKKGKG 11 +K GK GA K+ AKQ GKG Sbjct: 725 AKSMKASGKRGAGTGKGKNDKKAKQHSGKG 754
>tr|B7ELR4|B7ELR4_ORYSJ cDNA clone:J033010C22, full insert sequence OS=Oryza sativa subsp. japonica PE=2 SV=1 Length = 802
Score = 35.0 bits (79), Expect = 1.8 Identities = 29/90 (32%), Positives = 42/90 (46%), Gaps = 9/90 (10%) Frame = -2
Query: 253 LEDDLEMEREYRLLRKIKRGQLSENDLATDLCSDED---HERAGKPLKEHKSTQGAGVRK 83 L++ ERE L RK +R +E ++ D DE+ + GK K+ +S R+ Sbjct: 665 LKEKKRREREKNLPRKKRRRLEAEREMLEDESEDEEEAKESKGGKKEKKGQSLVDVAYRR 724
Query: 82 FSHVK--GKDGA----RKHGSHAKQKKGKG 11 +K GK GA K+ AKQ GKG Sbjct: 725 AKSMKASGKRGAGTGKGKNDKKAKQHSGKG 754
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