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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914143
Clone id YMU001_000042_D06
Library
Length 417
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATATCTAACATTGCTTCAGCTGTCGCTTGCATATGAAACTCAGCGCTAGACTTATCTTTA
AGTACCCAATTTCCTGATTGAATCCCTCGAAAGTTAAACATCTGCTCGAGTTCTTTAGAT
GAGCGAACTTGTACAGCTGGTCCACCAATACGCTCAATGTCTGCAGCTGCTTCAAGTTGA
AAACTTGGGGCCTTAGGTTTCTTAGGTTTTCCTTCATCATCCGTTAATTTTGGTTCTTTA
TCTAACCATGCCCACTCTAAACCCTTTGACTGCTGGTATGTACGAGGCACACGCCCGGTT
CTGGCTTCTTGTAGAGCGGAGTTGGCCGTATTAAAAATCCATGAAGTAGAATTTCTGGCC
GTAGCTCTGAGCATTACTCCGCGTCTCCCATTTATCAAAGTTCATCAAAGTGGCAAA
■■Homology search results ■■ -
sp_hit_id P78411
Definition sp|P78411|IRX5_HUMAN Iroquois-class homeodomain protein IRX-5 OS=Homo sapiens
Align length 85
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914143|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_D06.
         (417 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P78411|IRX5_HUMAN Iroquois-class homeodomain protein IRX-5 OS...    34   0.26 
sp|Q9Y6Z8|PALB_ASPOR Calpain-like protease palB/RIM13 OS=Aspergi...    33   0.58 
sp|Q4IPI4|ARP4_GIBZE Actin-related protein 4 OS=Gibberella zeae ...    33   0.58 
sp|P42941|SERB_YEAST Phosphoserine phosphatase OS=Saccharomyces ...    32   0.76 
sp|Q6A0A2|LARP5_MOUSE La-related protein 5 OS=Mus musculus GN=La...    32   1.3  
sp|P59445|INSE_SHIFL Transposase insE for insertion sequence IS3...    32   1.3  
sp|P0ADH3|INSE_ECOLI Transposase insE for insertion sequence IS3...    32   1.3  
sp|P0ADH4|INSE_ECO11 Transposase insE for insertion sequence IS3...    32   1.3  
sp|Q92615|LARP5_HUMAN La-related protein 5 OS=Homo sapiens GN=LA...    31   2.2  
sp|Q00204|PALB_EMENI Calpain-like protease palB OS=Emericella ni...    30   2.9  
sp|P12255|FHAB_BORPE Filamentous hemagglutinin OS=Bordetella per...    30   2.9  
sp|Q5SS80|DHR13_MOUSE Dehydrogenase/reductase SDR family member ...    30   2.9  
sp|A4W797|Y893_ENT38 UPF0234 protein Ent638_0893 OS=Enterobacter...    30   4.9  
sp|P48381|RFX3_MOUSE Transcription factor RFX3 OS=Mus musculus G...    30   4.9  
sp|P48380|RFX3_HUMAN Transcription factor RFX3 OS=Homo sapiens G...    30   4.9  
sp|Q9FN08|BGL10_ARATH Beta-galactosidase 10 OS=Arabidopsis thali...    30   4.9  
sp|Q5ZIM6|AATF_CHICK Protein AATF OS=Gallus gallus GN=AATF PE=2 ...    30   4.9  
sp|Q23670|TOP2_CAEEL Probable DNA topoisomerase 2 OS=Caenorhabdi...    29   6.4  
sp|Q9NEL2|SSL1_CAEEL Helicase ssl-1 OS=Caenorhabditis elegans GN...    29   6.4  
sp|P00704|LYSC_NUMME Lysozyme C OS=Numida meleagris GN=LYZ PE=1 ...    29   6.4  
sp|P00700|LYSC_COLVI Lysozyme C OS=Colinus virginianus GN=LYZ PE...    29   6.4  
sp|P00698|LYSC_CHICK Lysozyme C OS=Gallus gallus GN=LYZ PE=1 SV=1      29   6.4  
sp|P00699|LYSC_CALCC Lysozyme C OS=Callipepla californica GN=LYZ...    29   6.4  
sp|Q7LZQ2|LYSC_AIXSP Lysozyme C OS=Aix sponsa GN=LYZ PE=1 SV=1         29   6.4  
sp|P34945|SYS_THET2 Seryl-tRNA synthetase OS=Thermus thermophilu...    29   8.4  
sp|P21190|IME1_YEAST Meiosis-inducing protein 1 OS=Saccharomyces...    29   8.4  

>sp|P78411|IRX5_HUMAN Iroquois-class homeodomain protein IRX-5
           OS=Homo sapiens GN=IRX5 PE=2 SV=3
          Length = 483

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 5/85 (5%)
 Frame = -2

Query: 377 VMLRATARNSTSWIFNTANSALQEARTGRVPRTY----QQSKGLEWAWLDK-EPKLTDDE 213
           ++ + T    ++W  N      +E +    PR      ++ + ++    D+ EP+  +D+
Sbjct: 151 IITKMTLTQVSTWFANARRRLKKENKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDK 210

Query: 212 GKPKKPKAPSFQLEAAADIERIGGP 138
           G P+ P+A   + +AA+  ER+ GP
Sbjct: 211 GDPEGPEAGGAEQKAASGCERLQGP 235


>sp|Q9Y6Z8|PALB_ASPOR Calpain-like protease palB/RIM13
           OS=Aspergillus oryzae GN=palB PE=3 SV=1
          Length = 854

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -2

Query: 158 IERIGGPAVQVRSSKELEQMFNFRGIQSGNWVLKD 54
           IERIGGP  QV    E+E +   R ++ G W+L+D
Sbjct: 820 IERIGGPGGQVEDHFEVEALAEER-VEIGEWILED 853


>sp|Q4IPI4|ARP4_GIBZE Actin-related protein 4 OS=Gibberella zeae
           GN=ARP4 PE=3 SV=1
          Length = 471

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 19/91 (20%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -2

Query: 386 RRGVMLRATARNSTSWIFNT--ANSALQEARTGRVPRTYQQSKGLEWAWLDKEPKLTDDE 213
           R  V+    A  +TS + +   AN+++     G V +   Q   +   WL  + +   + 
Sbjct: 184 RTPVLAAFAAGKATSLVIDVGGANTSVTAIHDGMVLKRSIQKSPVGGIWLSSQIRSLFET 243

Query: 212 GKPKKPKAPSFQLEAAADIERIGGPAVQVRS 120
            +P+    P+F +E    ++ +  P+V++R+
Sbjct: 244 SEPQVELTPTFMIENKTPVDALSSPSVRLRN 274


>sp|P42941|SERB_YEAST Phosphoserine phosphatase OS=Saccharomyces
           cerevisiae GN=SER2 PE=1 SV=1
          Length = 309

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -3

Query: 175 LKQLQTLSVLVDQLYKFAHLKNSSRCLTFEGFNQEIGYLKISLALSFICKRQL 17
           +KQ   ++  V +L KF H KN    +   GF Q  G++K  L L F CK  L
Sbjct: 158 IKQKLEVTKGVPELCKFLHKKNCKLAVLSGGFIQFAGFIKDQLGLDF-CKANL 209


>sp|Q6A0A2|LARP5_MOUSE La-related protein 5 OS=Mus musculus GN=Larp5
           PE=2 SV=2
          Length = 741

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
 Frame = -2

Query: 398 LINGRRGVMLRATARNSTSWIFNTANSALQEARTGRV-PRTYQQSKGL------EWAWLD 240
           LING R    R   +  T  I N +  A +E  TGRV P + + S GL       + +  
Sbjct: 447 LINGVRSPQTRQAGQTRTR-IQNPSAYAKREIGTGRVEPSSLESSPGLGRGRKNSFGYRK 505

Query: 239 K-EPKLTDDEGK---PKKPKAPSFQL 174
           K E K T  + +   P KP +PSF+L
Sbjct: 506 KREEKFTSSQTQSPTPPKPPSPSFEL 531


>sp|P59445|INSE_SHIFL Transposase insE for insertion sequence IS3
           OS=Shigella flexneri GN=insE1 PE=3 SV=1
          Length = 102

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 230 KLTDDEGKPKKPKAPSFQLEAAADIERIGGPAVQVRSSKELEQMFNFRGIQSGNWVLKDK 51
           K      KP+K  +P F+ EA    ERIG  A     S    Q++N+R  Q        +
Sbjct: 6   KTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQ-----NQQ 60

Query: 50  SSAEFHMQATAE 15
           +S+E  ++ + E
Sbjct: 61  TSSERELEMSTE 72


>sp|P0ADH3|INSE_ECOLI Transposase insE for insertion sequence
           IS3A/B/C/D/E/fA/fB OS=Escherichia coli (strain K12)
           GN=insE1 PE=3 SV=1
          Length = 102

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 230 KLTDDEGKPKKPKAPSFQLEAAADIERIGGPAVQVRSSKELEQMFNFRGIQSGNWVLKDK 51
           K      KP+K  +P F+ EA    ERIG  A     S    Q++N+R  Q        +
Sbjct: 6   KTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQ-----NQQ 60

Query: 50  SSAEFHMQATAE 15
           +S+E  ++ + E
Sbjct: 61  TSSERELEMSTE 72


>sp|P0ADH4|INSE_ECO11 Transposase insE for insertion sequence IS3
           OS=Escherichia coli O111:H- GN=insE PE=3 SV=1
          Length = 102

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = -2

Query: 230 KLTDDEGKPKKPKAPSFQLEAAADIERIGGPAVQVRSSKELEQMFNFRGIQSGNWVLKDK 51
           K      KP+K  +P F+ EA    ERIG  A     S    Q++N+R  Q        +
Sbjct: 6   KTVSTSKKPRKQHSPEFRSEALKLAERIGVTAAARELSLYESQLYNWRSKQQ-----NQQ 60

Query: 50  SSAEFHMQATAE 15
           +S+E  ++ + E
Sbjct: 61  TSSERELEMSTE 72


>sp|Q92615|LARP5_HUMAN La-related protein 5 OS=Homo sapiens GN=LARP5
           PE=1 SV=3
          Length = 738

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 30/86 (34%), Positives = 41/86 (47%), Gaps = 11/86 (12%)
 Frame = -2

Query: 398 LINGRRGVMLRATARNSTSWIFNTANSALQEARTGRV-PRTYQQSKGL------EWAWLD 240
           LING R    R   +  T  I N +  A +EA  GRV P + + S GL       + +  
Sbjct: 445 LINGVRSPQTRQAGQTRTR-IQNPSAYAKREAGPGRVEPGSLESSPGLGRGRKNSFGYRK 503

Query: 239 K-EPKLTDDEGK---PKKPKAPSFQL 174
           K E K T  + +   P KP +PSF+L
Sbjct: 504 KREEKFTSSQTQSPTPPKPPSPSFEL 529


>sp|Q00204|PALB_EMENI Calpain-like protease palB OS=Emericella
           nidulans GN=palB PE=3 SV=2
          Length = 847

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -2

Query: 158 IERIGGPAVQVRSSKELEQMFNFRGIQSGNWVLKD 54
           +ERIGGP  QV    E+E +   R ++ G W+++D
Sbjct: 813 LERIGGPGGQVEDHFEVEALGEER-VEIGEWIVED 846
tr_hit_id A5WES9
Definition tr|A5WES9|A5WES9_PSYWF Putative uncharacterized protein OS=Psychrobacter sp. (strain PRwf-1)
Align length 85
Score (bit) 78.2
E-value 2.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914143|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_D06.
         (417 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5WES9|A5WES9_PSYWF Putative uncharacterized protein OS=Psych...    78   2e-13
tr|A5WEY1|A5WEY1_PSYWF Putative uncharacterized protein OS=Psych...    77   3e-13
tr|A5C3E9|A5C3E9_VITVI Putative uncharacterized protein OS=Vitis...    37   0.64 
tr|B6IXS4|B6IXS4_RHOCS Putative uncharacterized protein OS=Rhodo...    35   2.4  
tr|B6PMB9|B6PMB9_BRAFL Putative uncharacterized protein OS=Branc...    33   5.4  
tr|B7K8H4|B7K8H4_9CHRO Putative uncharacterized protein OS=Cyano...    33   7.1  
tr|A3IH69|A3IH69_9CHRO Putative uncharacterized protein OS=Cyano...    33   9.2  
tr|B8MY71|B8MY71_ASPFL Calpain-like protease PalBory OS=Aspergil...    33   9.2  
tr|B6H1Y4|B6H1Y4_PENCH Pc13g03370 protein OS=Penicillium chrysog...    33   9.2  

>tr|A5WES9|A5WES9_PSYWF Putative uncharacterized protein
           OS=Psychrobacter sp. (strain PRwf-1) GN=PsycPRwf_1222
           PE=4 SV=1
          Length = 784

 Score = 78.2 bits (191), Expect = 2e-13
 Identities = 41/85 (48%), Positives = 53/85 (62%)
 Frame = -2

Query: 257 EWAWLDKEPKLTDDEGKPKKPKAPSFQLEAAADIERIGGPAVQVRSSKELEQMFNFRGIQ 78
           +W     +   T   GK  K K  +F+L  A  IER GG  V + S+KEL+  F FR IQ
Sbjct: 384 DWGLTITDSSKTGSGGKKSKKKT-TFELIVAEQIERKGGKEVVINSTKELKDEFGFRDIQ 442

Query: 77  SGNWVLKDKSSAEFHMQATAEAMLD 3
           SG+W+LK+KSSAEFH++ TA AM D
Sbjct: 443 SGDWILKEKSSAEFHVKNTAAAMFD 467


>tr|A5WEY1|A5WEY1_PSYWF Putative uncharacterized protein
           OS=Psychrobacter sp. (strain PRwf-1) GN=PsycPRwf_1276
           PE=4 SV=1
          Length = 784

 Score = 77.4 bits (189), Expect = 3e-13
 Identities = 41/85 (48%), Positives = 53/85 (62%)
 Frame = -2

Query: 257 EWAWLDKEPKLTDDEGKPKKPKAPSFQLEAAADIERIGGPAVQVRSSKELEQMFNFRGIQ 78
           +W     +   T   GK  K K  +F+L  A  IER GG  V + S+KEL+  F FR IQ
Sbjct: 384 DWGLTITDSSKTGSGGKKGKKKT-TFELIVAEQIERKGGKEVVINSTKELKDEFGFRDIQ 442

Query: 77  SGNWVLKDKSSAEFHMQATAEAMLD 3
           SG+W+LK+KSSAEFH++ TA AM D
Sbjct: 443 SGDWILKEKSSAEFHVKNTAAAMFD 467


>tr|A5C3E9|A5C3E9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040124 PE=4 SV=1
          Length = 763

 Score = 36.6 bits (83), Expect = 0.64
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +1

Query: 241 SNHAHSKPFDCWYVRGTRPVLASCRAELAVLKIHEVEFLAVALSI 375
           +++ HS P+  WY   TR  L  C +   ++ IHEV+ L + L++
Sbjct: 596 TSYGHSHPYMVWYCSITRLFLTPCGSSWEIVAIHEVDRLLIPLNV 640


>tr|B6IXS4|B6IXS4_RHOCS Putative uncharacterized protein
           OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
           GN=RC1_3755 PE=4 SV=1
          Length = 364

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
 Frame = -2

Query: 374 MLRATARNSTSWIFNTANSALQEARTGRVPRTYQQSKGLEWAWLDKEPKLTDDEGKPKKP 195
           +L+ T  + +S +FN      Q A  G  P      + L +    KEP L    G+P +P
Sbjct: 5   LLKLTLTSGSSKVFNVLEITRQSAAAGTEPARLFSVRPLNYGVFFKEPALDGKAGRPGEP 64

Query: 194 KAPSFQLEAAADIERI--GGPAVQVRSSK 114
              +  L    D +RI  GG +V +  S+
Sbjct: 65  VIDT-MLYFPYDADRILEGGASVSLNDSR 92


>tr|B6PMB9|B6PMB9_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_132133 PE=4 SV=1
          Length = 440

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
 Frame = -2

Query: 368 RATARNSTSWIFNTANSALQEARTGRVPRTYQQSKGLEWAWLDKEPKLTDDEGKPK-KPK 192
           +ATA  S S   ++A +A    R GR PR +  +     A   + P+ ++  G P  +  
Sbjct: 263 QATAPRSASATCSSAEAAASRPRGGRSPRNHSTNNSP--ANTPERPESSEHHGPPSPRAA 320

Query: 191 APSFQLEAAADIERIGGPAVQVRSSK 114
             S        ++RIG P VQ  S+K
Sbjct: 321 GTSGDPHVHTTVDRIGSPVVQGPSTK 346


>tr|B7K8H4|B7K8H4_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. PCC 7424 GN=PCC7424_1493 PE=4 SV=1
          Length = 191

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 20/97 (20%), Positives = 45/97 (46%)
 Frame = -2

Query: 293 RVPRTYQQSKGLEWAWLDKEPKLTDDEGKPKKPKAPSFQLEAAADIERIGGPAVQVRSSK 114
           ++P    ++  L W  L++  +LT +E +   P  P F LE       +  P+  ++ ++
Sbjct: 80  KLPNGADRAPDLSWIRLERWNELTIEEREKFPPIVPDFVLE-------LMSPSDSLKDTQ 132

Query: 113 ELEQMFNFRGIQSGNWVLKDKSSAEFHMQATAEAMLD 3
           E  + +   G++ G  +++     E + Q   + +LD
Sbjct: 133 EKMEEYQANGVKLGWLIVRKLQRVEIYRQGQNKEILD 169


>tr|A3IH69|A3IH69_9CHRO Putative uncharacterized protein
           OS=Cyanothece sp. CCY 0110 GN=CY0110_10562 PE=4 SV=1
          Length = 155

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = -2

Query: 281 TYQQSKGLEWAWLDKEPKLTDDEGKPKKPKAPSFQLEAAADIERIGGPAVQVRSSKELEQ 102
           T ++S  + W  L++  +LT ++ +   P AP+F LE       +  P+  ++++++  +
Sbjct: 48  TAERSPDVSWIKLERWNQLTLEQREKFPPIAPNFVLE-------LMSPSDSLKNTQDKME 100

Query: 101 MFNFRGIQSGNWVLKDKS-SAEFHMQATAEAMLD 3
            +   G++ G W++  KS   E + Q  A+ +L+
Sbjct: 101 EYQANGVKLG-WLIDRKSHQVEIYRQGQAKEVLN 133


>tr|B8MY71|B8MY71_ASPFL Calpain-like protease PalBory OS=Aspergillus
           flavus NRRL3357 GN=AFLA_080080 PE=4 SV=1
          Length = 854

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/35 (45%), Positives = 22/35 (62%)
 Frame = -2

Query: 158 IERIGGPAVQVRSSKELEQMFNFRGIQSGNWVLKD 54
           IERIGGP  QV    E+E +   R ++ G W+L+D
Sbjct: 820 IERIGGPGGQVEDHFEVEALAEER-VEIGEWILED 853


>tr|B6H1Y4|B6H1Y4_PENCH Pc13g03370 protein OS=Penicillium
           chrysogenum Wisconsin 54-1255 GN=Pc13g03370 PE=4 SV=1
          Length = 850

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 16/36 (44%), Positives = 23/36 (63%)
 Frame = -2

Query: 158 IERIGGPAVQVRSSKELEQMFNFRGIQSGNWVLKDK 51
           IERIGGP  QV    E+E +   R ++ G WV++D+
Sbjct: 816 IERIGGPGGQVEDHFEVEALAEER-VEIGKWVIEDE 850