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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914147
Clone id YMU001_000042_D12
Library
Length 534
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_D12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTAACATGTAAACATCCATTGTCGTTGTCCTTTGATGGAATCCTTATGTAGTCACAAACT
GCAAAATAGTCACCACCAAACATCCACCTTCCAGAGGCACATCAGTGGGAAAAAAGAACT
TTGCTAATCATCTAACTCTAAAATAGAAACACTCCTATTGTACTAATCCTACCTACCCTC
CATCACTCGAGTGATGAGGATCAAAGTAAGTGGGTTGGAGAGCTCGATCGGTAGCTCTAA
TGCTAAACCGCCATCCTCATCATCAAGGTAGGTGTAATCGTCTTCGATAAGGCCATGTGT
CTCGTTTGTCCAAACACCATTATCGTCCTTGTCCTCTTCCGTGAAGAATAGTATTAGGAA
TGTCACGAGGCGTGGATACTCAGCCTGGGGAAAAAGTAAAACTTGGGCAATTGGGCAAAC
TTCTTGGATATAATAGGGATCTGTCATATTCAAGAGGCAGACAAACCATTCTAACTCCTC
AACATTTCTCTCACAAGCGAGTGTTTCAACCGAATCCCACTTAGAGGAAATATG
■■Homology search results ■■ -
sp_hit_id Q6P3N6
Definition sp|Q6P3N6|CDK8_XENTR Cell division protein kinase 8 OS=Xenopus tropicalis
Align length 49
Score (bit) 33.1
E-value 0.87
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914147|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_D12.
         (534 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6P3N6|CDK8_XENTR Cell division protein kinase 8 OS=Xenopus t...    33   0.87 
sp|Q66KH9|CDK8_XENLA Cell division protein kinase 8 OS=Xenopus l...    33   0.87 
sp|P49336|CDK8_HUMAN Cell division protein kinase 8 OS=Homo sapi...    33   0.87 
sp|Q8R3L8|CDK8_MOUSE Cell division protein kinase 8 OS=Mus muscu...    31   3.3  
sp|Q17IE8|CDK8_AEDAE Cell division protein kinase 8 OS=Aedes aeg...    31   3.3  
sp|Q8JH47|CDK8_DANRE Cell division protein kinase 8 OS=Danio rer...    30   5.7  

>sp|Q6P3N6|CDK8_XENTR Cell division protein kinase 8 OS=Xenopus
           tropicalis GN=cdk8 PE=2 SV=1
          Length = 464

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 447 MTDPYYIQEVCPIAQVLLFPQAEYPRLVTFLILFFTEEDKDDNGVWTNE 301
           M DPY++++  P + V    Q  YP+       F TEE+ DD G   N+
Sbjct: 330 MQDPYFLEDPLPTSDVFAGCQIPYPKRE-----FLTEEEPDDKGDKKNQ 373


>sp|Q66KH9|CDK8_XENLA Cell division protein kinase 8 OS=Xenopus
           laevis GN=cdk8 PE=2 SV=1
          Length = 416

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 447 MTDPYYIQEVCPIAQVLLFPQAEYPRLVTFLILFFTEEDKDDNGVWTNE 301
           M DPY++++  P + V    Q  YP+       F TEE+ DD G   N+
Sbjct: 282 MQDPYFLEDPLPTSDVFAGCQIPYPKRE-----FLTEEEPDDKGDKKNQ 325


>sp|P49336|CDK8_HUMAN Cell division protein kinase 8 OS=Homo sapiens
           GN=CDK8 PE=1 SV=1
          Length = 464

 Score = 33.1 bits (74), Expect = 0.87
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 447 MTDPYYIQEVCPIAQVLLFPQAEYPRLVTFLILFFTEEDKDDNGVWTNE 301
           M DPY++++  P + V    Q  YP+       F TEE+ DD G   N+
Sbjct: 330 MQDPYFLEDPLPTSDVFAGCQIPYPKRE-----FLTEEEPDDKGDKKNQ 373


>sp|Q8R3L8|CDK8_MOUSE Cell division protein kinase 8 OS=Mus musculus
           GN=Cdk8 PE=2 SV=3
          Length = 464

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -1

Query: 447 MTDPYYIQEVCPIAQVLLFPQAEYPRLVTFLILFFTEEDKDDNG 316
           M DPY++++  P + V    Q  YP+       F TEE+ D+ G
Sbjct: 330 MQDPYFLEDPLPTSDVFAGCQIPYPKRE-----FLTEEEPDEKG 368


>sp|Q17IE8|CDK8_AEDAE Cell division protein kinase 8 OS=Aedes
           aegypti GN=Cdk8 PE=3 SV=2
          Length = 501

 Score = 31.2 bits (69), Expect = 3.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -1

Query: 447 MTDPYYIQEVCPIAQVLLFPQAEYPRLVTFLILFFTEEDKDDNG 316
           M DPY+ ++  P A V       YP+       F T+ED+DD G
Sbjct: 330 MQDPYFSEDPMPTADVFAGCPIPYPKRE-----FLTDEDQDDKG 368


>sp|Q8JH47|CDK8_DANRE Cell division protein kinase 8 OS=Danio rerio
           GN=cdk8 PE=2 SV=1
          Length = 464

 Score = 30.4 bits (67), Expect = 5.7
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -1

Query: 447 MTDPYYIQEVCPIAQVLLFPQAEYPRLVTFLILFFTEEDKDDNGVWTNE 301
           M DPY+++E  P + V    Q  YP+       F TEE+ +D     N+
Sbjct: 330 MQDPYFLEEPLPTSDVFAGCQIPYPKRE-----FLTEEEPEDKADKKNQ 373
tr_hit_id O18970
Definition tr|O18970|O18970_BOVIN Putative uncharacterized protein (Fragment) OS=Bos taurus
Align length 23
Score (bit) 35.0
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914147|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_D12.
         (534 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O18970|O18970_BOVIN Putative uncharacterized protein (Fragmen...    35   2.4  
tr|B4DJH7|B4DJH7_HUMAN cDNA FLJ56916, highly similar to Cell div...    33   9.3  

>tr|O18970|O18970_BOVIN Putative uncharacterized protein (Fragment)
           OS=Bos taurus PE=2 SV=1
          Length = 146

 Score = 35.0 bits (79), Expect = 2.4
 Identities = 14/23 (60%), Positives = 16/23 (69%)
 Frame = -3

Query: 253 WRFSIRATDRALQPTYFDPHHSS 185
           WR  +RA DRALQP+   PH SS
Sbjct: 51  WRLQVRAADRALQPSELSPHASS 73


>tr|B4DJH7|B4DJH7_HUMAN cDNA FLJ56916, highly similar to Cell
           division protein kinase 8 (EC 2.7.11.22) OS=Homo sapiens
           PE=2 SV=1
          Length = 305

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -1

Query: 447 MTDPYYIQEVCPIAQVLLFPQAEYPRLVTFLILFFTEEDKDDNGVWTNE 301
           M DPY++++  P + V    Q  YP+       F TEE+ DD G   N+
Sbjct: 171 MQDPYFLEDPLPTSDVFAGCQIPYPKRE-----FLTEEEPDDKGDKKNQ 214