BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914150|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_E03.
         (333 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A9KNW4|IF2_CLOPH Translation initiation factor IF-2 OS=Clostr...    33   0.58 
sp|Q15YP4|EFG1_PSEA6 Elongation factor G 1 OS=Pseudoalteromonas ...    32   1.3  
sp|O89110|CASP8_MOUSE Caspase-8 OS=Mus musculus GN=Casp8 PE=1 SV=1     31   1.7  
sp|P33580|PR8A4_RAT Prolactin-8A4 OS=Rattus norvegicus GN=Prl8a4...    31   2.2  
sp|Q9Z6M1|AROK_CHLPN Shikimate kinase OS=Chlamydia pneumoniae GN...    31   2.2  
sp|Q9U1W2|MED8_CAEEL Mediator of RNA polymerase II transcription...    30   2.9  
sp|P62640|CHEB3_GEOSL Chemotaxis response regulator protein-glut...    30   2.9  
sp|Q92YM4|CHEB3_RHIME Chemotaxis response regulator protein-glut...    30   3.8  
sp|Q9CI68|YEJH_LACLA UPF0230 protein yejH OS=Lactococcus lactis ...    30   4.9  
sp|Q9K1P6|U409_NEIMB UPF0409 lipoprotein NMB0035 OS=Neisseria me...    30   4.9  
sp|Q5RJM0|MK67I_RAT MKI67 FHA domain-interacting nucleolar phosp...    29   6.4  
sp|Q9YF76|RL22_AERPE 50S ribosomal protein L22P OS=Aeropyrum per...    29   6.4  
sp|Q47SA3|LEUC_THEFY 3-isopropylmalate dehydratase large subunit...    29   6.4  
sp|Q5SS90|CG057_MOUSE Uncharacterized protein C7orf57 homolog OS...    29   8.4  
sp|Q6TMG5|NEMO_RAT NF-kappa-B essential modulator OS=Rattus norv...    29   8.4  
sp|Q92805|GOGA1_HUMAN Golgin subfamily A member 1 OS=Homo sapien...    29   8.4  
sp|Q9PPI9|DPO3A_CAMJE DNA polymerase III subunit alpha OS=Campyl...    29   8.4  
sp|Q1MC14|CHEB2_RHIL3 Chemotaxis response regulator protein-glut...    29   8.4  
sp|Q2P5Q6|CHEB1_XANOM Chemotaxis response regulator protein-glut...    29   8.4  
sp|Q9URY2|ALP7_SCHPO Microtubule protein alp7 OS=Schizosaccharom...    29   8.4  

>sp|A9KNW4|IF2_CLOPH Translation initiation factor IF-2
           OS=Clostridium phytofermentans (strain ATCC 700394 / DSM
           18823 / ISDg) GN=infB PE=3 SV=1
          Length = 1131

 Score = 32.7 bits (73), Expect = 0.58
 Identities = 26/95 (27%), Positives = 44/95 (46%)
 Frame = +2

Query: 20  EMGGDRSQLANKDDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFES 199
           E G  +S    KD +    F+      ++ + D  K+V   +PE    +EL DK+    S
Sbjct: 515 EDGNIKSAKGKKDPNRKGAFIMPKPQQSLEKQDEIKTVI--IPEVLTIKELADKMKVVPS 572

Query: 200 MEKEGLIERIQLQTKALQENSEQNLEDVREIIKGY 304
           +    +++++ L  K +  NSE   E+  EI  GY
Sbjct: 573 V----VVKKLFLAGKMVSINSEITFEEAEEIALGY 603


>sp|Q15YP4|EFG1_PSEA6 Elongation factor G 1 OS=Pseudoalteromonas
           atlantica (strain T6c / BAA-1087) GN=fusA1 PE=3 SV=1
          Length = 695

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
 Frame = +2

Query: 134 DTGMPES----SVSQELTDKILAFESMEKEGLIERIQLQTKALQENSEQNLEDVREII-K 298
           DTG+PE+     V  ++ DK+  +  M  E  +E+      A  +  E ++ED++  I K
Sbjct: 185 DTGLPENYEITDVPADMVDKVEEYREMLIETAVEQDDDLMMAYMDGEEPSMEDIKRCIRK 244

Query: 299 GYRPGD 316
           G R  D
Sbjct: 245 GTRTMD 250


>sp|O89110|CASP8_MOUSE Caspase-8 OS=Mus musculus GN=Casp8 PE=1 SV=1
          Length = 480

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = -1

Query: 213 PSFSMLSKARILSVNS*DTLLSGIPVSTDFQQSARTTVPELASHKNKLPEESSLL 49
           PS S   K   +          G+P    F+Q   T   + +SHKN +P+E+  L
Sbjct: 348 PSLSGKPKIFFIQACQGSNFQKGVPDEAGFEQQNHTLEVDSSSHKNYIPDEADFL 402


>sp|P33580|PR8A4_RAT Prolactin-8A4 OS=Rattus norvegicus GN=Prl8a4
           PE=1 SV=2
          Length = 239

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 18/47 (38%), Positives = 25/47 (53%)
 Frame = +2

Query: 185 LAFESMEKEGLIERIQLQTKALQENSEQNLEDVREIIKGYRPGDGIR 325
           L  E    EG+ E I  + K L+EN+ Q L+D+R I+    P   IR
Sbjct: 139 LVIELSAMEGVPETILCKVKDLEENNRQLLDDLRWILTKVSPTAEIR 185


>sp|Q9Z6M1|AROK_CHLPN Shikimate kinase OS=Chlamydia pneumoniae
           GN=aroK PE=3 SV=1
          Length = 176

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
 Frame = +2

Query: 80  LCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESMEKEGLIERIQ--LQTKALQ 253
           L     GT++    ++++ T      +S EL    L +E +EK GL ER++  ++TK L 
Sbjct: 76  LISLGGGTLMYEASYRAIQTRGALVFLSVELP---LIYERLEKRGLPERLKEAMKTKPLS 132

Query: 254 ENSEQNLEDVREIIKGYRPGDGI 322
           E   + ++ ++EI     P D +
Sbjct: 133 EILTERIDRMKEIADYIFPVDHV 155


>sp|Q9U1W2|MED8_CAEEL Mediator of RNA polymerase II transcription
           subunit 8 OS=Caenorhabditis elegans GN=mdt-8 PE=2 SV=1
          Length = 297

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 19/63 (30%), Positives = 33/63 (52%), Gaps = 4/63 (6%)
 Frame = +2

Query: 152 SSVSQELTDKILAFESMEKEGLIERI----QLQTKALQENSEQNLEDVREIIKGYRPGDG 319
           S+ S +L  + +A  +   EGLI  +    ++ T+A  E    N ++  +I+K    G+G
Sbjct: 149 SAKSADLVVRQIAAYNKNIEGLINHLNSVDRMHTEAAIEKPTYNRDETAKIVKSILTGEG 208

Query: 320 IRS 328
           IRS
Sbjct: 209 IRS 211


>sp|P62640|CHEB3_GEOSL Chemotaxis response regulator
           protein-glutamate methylesterase of group 3 operon
           OS=Geobacter sulfurreducens GN=cheB3 PE=3 SV=1
          Length = 371

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 5/81 (6%)
 Frame = +2

Query: 8   VECAEMGGDRSQLA-----NKDDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQEL 172
           + CAE+ G R+          D S G   +  A   T+  A+   +V  GMP+ +++  +
Sbjct: 288 LSCAEVFGPRTLGVVLTGMGNDGSKGVAAINRAGGQTLAEAE-ETAVVFGMPKEAIATGV 346

Query: 173 TDKILAFESMEKEGLIERIQL 235
            DKI++ + M +E +I+R  L
Sbjct: 347 VDKIVSLDRMSRE-IIQRCGL 366


>sp|Q92YM4|CHEB3_RHIME Chemotaxis response regulator
           protein-glutamate methylesterase of group 3 operon
           OS=Rhizobium meliloti GN=cheB3 PE=3 SV=1
          Length = 354

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 56  DDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESM 202
           DD +  L     + G  +  D   SV  GMP+S++   L D +L  ES+
Sbjct: 286 DDGTEGLRALRMAGGKAIAQDEKSSVVFGMPKSAIGAGLVDLVLPLESI 334


>sp|Q9CI68|YEJH_LACLA UPF0230 protein yejH OS=Lactococcus lactis
           subsp. lactis GN=yejH PE=3 SV=2
          Length = 278

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 12/101 (11%)
 Frame = +2

Query: 41  QLANKDDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESME----- 205
           ++A +DD   S+ L EA SGT V A     + +G   + +  + TD+   F+ +E     
Sbjct: 74  KIAAEDDEIISIHLTEALSGT-VEAARQGGMLSGRNVTVIDSDFTDQAQKFQVVEAARLA 132

Query: 206 -----KEGLIERIQLQTKALQENSEQ--NLEDVREIIKGYR 307
                KE ++E+I    K ++EN+E       +  ++KG R
Sbjct: 133 KAGASKEEILEKI----KYIRENTELFIGFSTLENLVKGGR 169


>sp|Q9K1P6|U409_NEIMB UPF0409 lipoprotein NMB0035 OS=Neisseria
           meningitidis serogroup B GN=NMB0035 PE=1 SV=1
          Length = 388

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 227 IQLQTKALQENSEQNLEDVREIIKGYRPGDGIRS 328
           I+ + KAL E ++ N + V EI+  YR  DG  +
Sbjct: 322 IEAKNKALLEKTDTNFKQVNEILAKYRTKDGFET 355

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914150|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_E03.
         (333 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2TL39|B2TL39_CLOBB Multisensor signal transduction histidine...    38   0.29 
tr|B2V302|B2V302_CLOBA Two component system histidine kinase OS=...    37   0.65 
tr|B3XM93|B3XM93_LACRE Serine-type D-Ala-D-Ala carboxypeptidase ...    35   1.5  
tr|A6LLR0|A6LLR0_THEM4 Peptidase M22, glycoprotease OS=Thermosip...    35   2.5  
tr|Q9LJH0|Q9LJH0_ARATH Gb|AAF27150.1 OS=Arabidopsis thaliana PE=...    34   3.2  
tr|B6IHI7|B6IHI7_CAEBR Putative uncharacterized protein OS=Caeno...    34   4.2  
tr|Q8RA12|Q8RA12_THETN Chemotaxis response regulator CheB, consi...    33   5.5  
tr|B7R852|B7R852_9THEO Protein-glutamate methylesterase CheB OS=...    33   5.5  
tr|Q5R2I7|Q5R2I7_TRISI Homeobox-containing Msx1 homologue (Fragm...    33   7.2  
tr|B8C9I8|B8C9I8_THAPS Putative uncharacterized protein OS=Thala...    33   7.2  
tr|B8HMX8|B8HMX8_9CHRO CheB methylesterase OS=Cyanothece sp. PCC...    33   9.4  
tr|B7BPN5|B7BPN5_9CLOT Putative uncharacterized protein OS=Clost...    33   9.4  
tr|Q7PQN4|Q7PQN4_ANOGA AGAP004256-PA OS=Anopheles gambiae GN=AGA...    33   9.4  
tr|Q5BF31|Q5BF31_EMENI Putative uncharacterized protein OS=Emeri...    33   9.4  

>tr|B2TL39|B2TL39_CLOBB Multisensor signal transduction histidine
           kinase OS=Clostridium botulinum (strain Eklund 17B /
           type B) GN=CLL_A1721 PE=4 SV=1
          Length = 681

 Score = 37.7 bits (86), Expect = 0.29
 Identities = 22/85 (25%), Positives = 45/85 (52%)
 Frame = +2

Query: 77  FLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESMEKEGLIERIQLQTKALQE 256
           FL +    T++    +K +   +  +   Q++  K +  E +E++ L  ++ L  ++L+E
Sbjct: 362 FLEDNKDETIILLKAFKKMADDLKCAENEQKIYLKNIKDEQIEQKKLSRQLFLLNESLEE 421

Query: 257 NSEQNLEDVREIIKGYRPGDGIRSV 331
             +   ED+RE IKG +  D I+S+
Sbjct: 422 KVKLRTEDLREAIKGLKEADKIKSL 446


>tr|B2V302|B2V302_CLOBA Two component system histidine kinase
           OS=Clostridium botulinum (strain Alaska E43 / type E3)
           GN=CLH_1874 PE=4 SV=1
          Length = 681

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 21/85 (24%), Positives = 46/85 (54%)
 Frame = +2

Query: 77  FLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESMEKEGLIERIQLQTKALQE 256
           FL +    T++    +K +   +  +   Q++  + +  E +E++ L +++ L  ++L+E
Sbjct: 362 FLEDNKDETIILLKAFKKMADDLKCAENEQKIYLQNIKDEQIEQKKLSKQLFLLNESLEE 421

Query: 257 NSEQNLEDVREIIKGYRPGDGIRSV 331
             +   ED+RE IKG +  D I+S+
Sbjct: 422 KVKLRTEDLREAIKGLKEADKIKSL 446


>tr|B3XM93|B3XM93_LACRE Serine-type D-Ala-D-Ala carboxypeptidase
           OS=Lactobacillus reuteri 100-23 GN=Lreu23DRAFT_4737 PE=3
           SV=1
          Length = 403

 Score = 35.4 bits (80), Expect = 1.5
 Identities = 18/63 (28%), Positives = 37/63 (58%)
 Frame = +2

Query: 23  MGGDRSQLANKDDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESM 202
           MGG +S LAN    + +  + +AS+G ++     ++VD  +P +S+++ LT  ++  E  
Sbjct: 16  MGGSQSVLANNRIDASAAIMADASTGQIIYK---RNVDKALPVASITKLLTILVIEDEIQ 72

Query: 203 EKE 211
           +K+
Sbjct: 73  QKQ 75


>tr|A6LLR0|A6LLR0_THEM4 Peptidase M22, glycoprotease OS=Thermosipho
           melanesiensis (strain BI429 / DSM 12029) GN=Tmel_1000
           PE=4 SV=1
          Length = 237

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +2

Query: 128 SVDTGMPESSVSQELTDKILAFESMEKEGLIERIQLQTKALQENSEQNLEDVREIIKGYR 307
           ++DT  P+ +V  +  DK+L +  M KE   + I    K L+E  E N E++  +  G  
Sbjct: 30  AIDTSTPQIAVFYKTLDKLLTYSFMSKEKHTKNISALIKTLKE--EINFEEIDVVGIGIG 87

Query: 308 PG 313
           PG
Sbjct: 88  PG 89


>tr|Q9LJH0|Q9LJH0_ARATH Gb|AAF27150.1 OS=Arabidopsis thaliana PE=4
           SV=1
          Length = 1040

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 23/75 (30%), Positives = 39/75 (52%)
 Frame = +2

Query: 5   SVECAEMGGDRSQLANKDDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKI 184
           + E AE+  D SQL ++D  S  L+L +  SG       + S  TG+   +   + +++ 
Sbjct: 735 AAEAAELATDFSQLKSEDGVSVPLYLEQEQSGRN-----FNSHGTGISSDNAQLKASEES 789

Query: 185 LAFESMEKEGLIERI 229
            A + MEKEG+ E +
Sbjct: 790 EASDDMEKEGMGEAL 804


>tr|B6IHI7|B6IHI7_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG27112 PE=4 SV=1
          Length = 1028

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 182 ILAFESMEKEGLIERIQLQTKALQENSEQNLEDVRE----IIKGYRPGD 316
           IL  +  EK+G I+RIQ+   A +  ++Q  EDVRE    I+KG +  D
Sbjct: 287 ILNVQLREKDGKIDRIQVDLLASESRAQQAEEDVREMKDRILKGKKDDD 335


>tr|Q8RA12|Q8RA12_THETN Chemotaxis response regulator CheB, consists
           of CheY-like receiver domain and a methylesterase
           (Demethylase) domain OS=Thermoanaerobacter tengcongensis
           GN=CheB2 PE=4 SV=1
          Length = 198

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +2

Query: 56  DDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESMEKEGLIERIQ 232
           D S G  FL E  +  ++  D   S+  GMP S++   L DKIL  + + +E +IE+++
Sbjct: 133 DGSKGIRFLKEKKA-FIISQDVESSIAKGMPYSAIKTGLVDKILPLDKIPQE-IIEKVR 189


>tr|B7R852|B7R852_9THEO Protein-glutamate methylesterase CheB
           OS=Carboxydibrachium pacificum DSM 12653 GN=CDSM653_1540
           PE=4 SV=1
          Length = 198

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 20/59 (33%), Positives = 33/59 (55%)
 Frame = +2

Query: 56  DDSSGSLFLCEASSGTVVRADCWKSVDTGMPESSVSQELTDKILAFESMEKEGLIERIQ 232
           D S G  FL E  +  ++  D   S+  GMP S++   L DKIL  + + +E +IE+++
Sbjct: 133 DGSKGIRFLKEKKA-FIISQDVESSIAKGMPYSAIKTGLVDKILPLDKIPQE-IIEKVR 189


>tr|Q5R2I7|Q5R2I7_TRISI Homeobox-containing Msx1 homologue
           (Fragment) OS=Trionyx sinensis GN=PsMsx1 PE=2 SV=1
          Length = 236

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 22/69 (31%), Positives = 35/69 (50%)
 Frame = -1

Query: 225 RSISPSFSMLSKARILSVNS*DTLLSGIPVSTDFQQSARTTVPELASHKNKLPEESSLLA 46
           +++SP    LS A        DT  S +P+++ F      T+PE A  K++ PE+    A
Sbjct: 29  QTLSPRVGSLSAAA-------DTPASPLPINSHFPVGGLVTLPEDALVKSESPEKQERTA 81

Query: 45  SWLRSPPIS 19
            W++SP  S
Sbjct: 82  -WMQSPRFS 89


>tr|B8C9I8|B8C9I8_THAPS Putative uncharacterized protein
           OS=Thalassiosira pseudonana CCMP1335
           GN=THAPSDRAFT_269513 PE=4 SV=1
          Length = 447

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
 Frame = +2

Query: 23  MGGDRSQLANKDDSSGSLFLCEASSGTVVRADCWK-SVDTGMPESSVSQELTDKILAFES 199
           + G +  + N++  +G LFL  A +GT  R D  +  V+ GM   SV Q++ DK+    S
Sbjct: 208 LNGTKMWITNEE--TGDLFLVYARTGTEKRTDITQFIVEGGMEGFSVGQKINDKLGMRAS 265

Query: 200 MEKEGLIERIQLQTK 244
              E + E + L +K
Sbjct: 266 PTAELVFENVFLPSK 280