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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914169
Clone id YMU001_000042_G05
Library
Length 469
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTCAGAAATCACTATTTGTCTTACAGAATTACTCAATAACTTGTTAAAACAAATTGTC
AATATAGCTGCCCTACCATTACATTGATAGATACGACAGAGTTCCATTGCAAAGCCAAAG
AGAACAGTTGATAGCACTTCACAGCATTAATCTCTTCACAGGCAGATTGTATATTACATC
ATCCTTTTGTCATGACAGAGTGCGAACCAAAATCGCGGACATCAATTAGGATGTGGAAAG
GATCCCTTCAATCATGATTCGACAAATTGAGAGAGCCATCCTATGGGCTTAACAATCACC
CACCCTCAAGCTCTTGCTTTCTTCTCTTCCTCGATTATGGCTACCAGTGATGGAGGAGGC
TTTGGAATGATGCTCCTTTTCCAAGCTTTGTCCAGCTTGCGTGATGCCCTTTTTTTGATC
CCCTTTACAAGCTCTCTCTCTCTATGAATAGTCAGCATGCGTGCTATCC
■■Homology search results ■■ -
sp_hit_id Q9FJP3
Definition sp|Q9FJP3|RK29_ARATH 50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana
Align length 53
Score (bit) 72.8
E-value 7.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914169|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_G05.
         (469 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9FJP3|RK29_ARATH 50S ribosomal protein L29, chloroplastic OS...    73   7e-13
sp|Q9SWI6|RK29_MAIZE 50S ribosomal protein L29, chloroplastic OS...    63   6e-10
sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1...    31   2.4  
sp|P01130|LDLR_HUMAN Low-density lipoprotein receptor OS=Homo sa...    30   5.3  
sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2...    30   5.3  
sp|P48562|CLA4_YEAST Serine/threonine-protein kinase CLA4 OS=Sac...    30   6.8  
sp|Q9HFW2|CLA4_ASHGO Serine/threonine-protein kinase CLA4 OS=Ash...    30   6.8  
sp|P35950|LDLR_CRIGR Low-density lipoprotein receptor OS=Cricetu...    29   9.1  

>sp|Q9FJP3|RK29_ARATH 50S ribosomal protein L29, chloroplastic
           OS=Arabidopsis thaliana GN=RPL29 PE=1 SV=1
          Length = 173

 Score = 72.8 bits (177), Expect = 7e-13
 Identities = 33/53 (62%), Positives = 42/53 (79%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSLVAIIEEEKKARA 309
           +ARMLT+ RERE+ +GIKKR SRKLD+ WK+SI+P+PPPSL  + EEE    A
Sbjct: 114 VARMLTVKREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEA 166


>sp|Q9SWI6|RK29_MAIZE 50S ribosomal protein L29, chloroplastic
           OS=Zea mays GN=RPL29 PE=2 SV=1
          Length = 161

 Score = 63.2 bits (152), Expect = 6e-10
 Identities = 30/47 (63%), Positives = 37/47 (78%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSLVAIIEE 327
           IARMLT+ RERE+ +GI KR SRKLD+ WK+SI+ +PPPSL    EE
Sbjct: 115 IARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161


>sp|Q14517|FAT1_HUMAN Protocadherin Fat 1 OS=Homo sapiens GN=FAT1
           PE=1 SV=1
          Length = 4590

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
 Frame = +2

Query: 104 PLQSQREQLIALHSINLFTGRLYITSSFCHDRVRTK---IADIN*DVERIPSIMIRQIER 274
           P    R ++++  S NLF    YI   FC  R+RTK    A +N +V+   +++++ +E+
Sbjct: 66  PAWEVRYKIVSGDSENLFKAEEYILGDFCFLRIRTKGGNTAILNREVKDHYTLIVKALEK 125


>sp|P01130|LDLR_HUMAN Low-density lipoprotein receptor OS=Homo
           sapiens GN=LDLR PE=1 SV=1
          Length = 860

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 16/61 (26%), Positives = 32/61 (52%)
 Frame = -1

Query: 244 DPFHILIDVRDFGSHSVMTKG*CNIQSACEEINAVKCYQLFSLALQWNSVVSINVMVGQL 65
           DP H  +   D+G+ + + KG          +N V  Y L +  +QW + ++++++ G+L
Sbjct: 525 DPVHGFMYWTDWGTPAKIKKG---------GLNGVDIYSLVTENIQWPNGITLDLLSGRL 575

Query: 64  Y 62
           Y
Sbjct: 576 Y 576


>sp|Q9NYQ8|FAT2_HUMAN Protocadherin Fat 2 OS=Homo sapiens GN=FAT2
           PE=1 SV=1
          Length = 4349

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/79 (22%), Positives = 42/79 (53%), Gaps = 9/79 (11%)
 Frame = +2

Query: 71  PYHYIDRYDRV------PLQSQREQLIALHSINLFTGRLYITSSFCHDRVRTKIAD---I 223
           P  Y++ ++++      P  + R ++I+    N+F    Y+  +FC  R+RTK ++   +
Sbjct: 48  PKTYVESFEKMGIYLAEPQWAVRYRIISGDVANVFKTEEYVVGNFCFLRIRTKSSNTALL 107

Query: 224 N*DVERIPSIMIRQIERAI 280
           N +V    +++I+  E+ +
Sbjct: 108 NREVRDSYTLIIQATEKTL 126


>sp|P48562|CLA4_YEAST Serine/threonine-protein kinase CLA4
           OS=Saccharomyces cerevisiae GN=CLA4 PE=1 SV=1
          Length = 842

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 171 ILHHPFVMTECEPKSRTSIRMWK 239
           +LHH F    C+PK  TS+  WK
Sbjct: 819 LLHHGFFNMACDPKDLTSLLEWK 841


>sp|Q9HFW2|CLA4_ASHGO Serine/threonine-protein kinase CLA4 OS=Ashbya
           gossypii GN=CLA4 PE=3 SV=1
          Length = 793

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 171 ILHHPFVMTECEPKSRTSIRMWK 239
           +LHH F  T CEP+   ++  WK
Sbjct: 770 LLHHSFFETSCEPEELANLLKWK 792


>sp|P35950|LDLR_CRIGR Low-density lipoprotein receptor OS=Cricetulus
           griseus GN=LDLR PE=3 SV=1
          Length = 854

 Score = 29.3 bits (64), Expect = 9.1
 Identities = 16/61 (26%), Positives = 31/61 (50%)
 Frame = -1

Query: 244 DPFHILIDVRDFGSHSVMTKG*CNIQSACEEINAVKCYQLFSLALQWNSVVSINVMVGQL 65
           DP H  +   D+G+ + + KG          +N V  Y L +  +QW + +++++  G+L
Sbjct: 525 DPVHGFMYWTDWGTPAKIKKG---------GLNGVDIYSLVTEDIQWPNGITLDIPSGRL 575

Query: 64  Y 62
           Y
Sbjct: 576 Y 576
tr_hit_id A9NYU9
Definition tr|A9NYU9|A9NYU9_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 53
Score (bit) 74.7
E-value 2.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914169|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_G05.
         (469 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NYU9|A9NYU9_PICSI Putative uncharacterized protein OS=Picea...    75   2e-12
tr|A9NQN1|A9NQN1_PICSI Putative uncharacterized protein OS=Picea...    75   2e-12
tr|A7R3S2|A7R3S2_VITVI Chromosome undetermined scaffold_561, who...    69   9e-11
tr|B4G243|B4G243_MAIZE Putative uncharacterized protein OS=Zea m...    63   6e-09
tr|Q6Z6A0|Q6Z6A0_ORYSJ Os02g0754300 protein OS=Oryza sativa subs...    63   8e-09
tr|A2X9Q8|A2X9Q8_ORYSI Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|A9SKY5|A9SKY5_PHYPA Predicted protein (Fragment) OS=Physcomit...    59   1e-07
tr|B6TS58|B6TS58_MAIZE 50S ribosomal protein L29 OS=Zea mays PE=...    59   2e-07
tr|A9TG89|A9TG89_PHYPA Predicted protein (Fragment) OS=Physcomit...    58   2e-07
tr|Q8BEQ1|Q8BEQ1_9VIRU ORF2a OS=Subterranean clover mottle virus...    34   3.2  
tr|Q21DS5|Q21DS5_SACD2 Putative uncharacterized protein OS=Sacch...    34   4.2  
tr|Q8RV58|Q8RV58_ORYSJ OSJNBb0008G24.29 protein OS=Oryza sativa ...    34   4.2  
tr|A6PRE7|A6PRE7_9BACT Peptidoglycan-binding LysM OS=Victivallis...    34   4.2  
tr|A1RDK1|A1RDK1_ARTAT Putative sugar transporter OS=Arthrobacte...    33   9.3  

>tr|A9NYU9|A9NYU9_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 174

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 37/53 (69%), Positives = 45/53 (84%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSLVAIIEEEKKARA 309
           IARMLT+ RE EL +GI+KR SRK+D+AWKRSIIPKPPPSL   ++EEK A+A
Sbjct: 115 IARMLTVRREMELEQGIRKRLSRKMDRAWKRSIIPKPPPSL-RKLQEEKAAKA 166


>tr|A9NQN1|A9NQN1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 173

 Score = 74.7 bits (182), Expect = 2e-12
 Identities = 36/53 (67%), Positives = 46/53 (86%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSLVAIIEEEKKARA 309
           IARMLT+ RERE+ +GIKKR SRK+D+AWKRSII +PPPSL+  ++EEK A+A
Sbjct: 114 IARMLTVRREREIEQGIKKRLSRKMDRAWKRSIIARPPPSLLK-LQEEKAAKA 165


>tr|A7R3S2|A7R3S2_VITVI Chromosome undetermined scaffold_561, whole
           genome shotgun sequence (Chromosome undetermined
           scaffold_2363, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00003906001 PE=4 SV=1
          Length = 79

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 32/53 (60%), Positives = 41/53 (77%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSLVAIIEEEKKARA 309
           +ARMLT+ RERE+ +GI KR SRKLD+ WK+SI+ +PPPSL  + EEE  A A
Sbjct: 24  VARMLTVKREREIEEGINKRLSRKLDRQWKKSIVVRPPPSLKKLQEEEAAAEA 76


>tr|B4G243|B4G243_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 161

 Score = 63.2 bits (152), Expect = 6e-09
 Identities = 30/47 (63%), Positives = 37/47 (78%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSLVAIIEE 327
           IARMLT+ RERE+ +GI KR SRKLD+ WK+SI+ +PPPSL    EE
Sbjct: 115 IARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161


>tr|Q6Z6A0|Q6Z6A0_ORYSJ Os02g0754300 protein OS=Oryza sativa subsp.
           japonica GN=P0627E03.11 PE=2 SV=1
          Length = 165

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 28/41 (68%), Positives = 35/41 (85%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSL 345
           IARMLT+ RERE+ +GI KR SRKLD+ WK+SI+ +PPPSL
Sbjct: 119 IARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSL 159


>tr|A2X9Q8|A2X9Q8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_08980 PE=4 SV=1
          Length = 165

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 28/41 (68%), Positives = 35/41 (85%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSL 345
           IARMLT+ RERE+ +GI KR SRKLD+ WK+SI+ +PPPSL
Sbjct: 119 IARMLTVKREREIEQGINKRLSRKLDRKWKQSIMVRPPPSL 159


>tr|A9SKY5|A9SKY5_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_37483 PE=4 SV=1
          Length = 113

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 26/40 (65%), Positives = 33/40 (82%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPS 348
           IARMLT+ RERE+ +G+  R SRKLD+ WKRSI+ +PPPS
Sbjct: 74  IARMLTVKREREIERGVGLRESRKLDREWKRSIVIRPPPS 113


>tr|B6TS58|B6TS58_MAIZE 50S ribosomal protein L29 OS=Zea mays PE=2
           SV=1
          Length = 161

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 26/41 (63%), Positives = 33/41 (80%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPSL 345
           IARMLT+ RERE  +GI KR SR+LD+ WK+ I+ +PPPSL
Sbjct: 115 IARMLTVKRERETEQGINKRLSRELDRKWKQGIVVRPPPSL 155


>tr|A9TG89|A9TG89_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_27745 PE=4 SV=1
          Length = 82

 Score = 58.2 bits (139), Expect = 2e-07
 Identities = 25/40 (62%), Positives = 33/40 (82%)
 Frame = -3

Query: 467 IARMLTIHRERELVKGIKKRASRKLDKAWKRSIIPKPPPS 348
           IARMLT+ RERE+ +G+  R SRKLD+ WKR+I+ +PPPS
Sbjct: 43  IARMLTVKREREIERGVSIRESRKLDREWKRNIVIRPPPS 82


>tr|Q8BEQ1|Q8BEQ1_9VIRU ORF2a OS=Subterranean clover mottle virus
           PE=4 SV=1
          Length = 580

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/25 (60%), Positives = 19/25 (76%)
 Frame = -3

Query: 422 GIKKRASRKLDKAWKRSIIPKPPPS 348
           GIKK++ RKL K+ KR   PKPPP+
Sbjct: 543 GIKKKSRRKLRKSDKRKSTPKPPPA 567