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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914170
Clone id YMU001_000042_G06
Library
Length 480
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGCTTCGATGCAGCATATTCTGTATTGAGACATTTACCTTTGCAAAGCTTTTAGTAGCAA
GCTCTTGTGAGCAGCTTGATGAGAGAGCCATCTGCCTGCTTGACAGACCCAAATGTGGAT
TTCTTGTGAAAGAATTTGGAGCTACATGGAAGGGGTGTACAGGATGTATTGCGATGTGCT
TCTTGTAGCCACTTCAAAGAAGCTTTGGCTGCTTGCACACCACCCGCCCAAACTCGGGTG
TGTTGACACAGAAGCCAGTCGGCATAAGTGAATTTGCAGCCCAAAATTGGCACTGGACAA
TTTTGGGCAGCGATGATCCCCTGCCCAAGCTCGGGCAGGCGTTTAGCTCCTGCTAGCTTA
TTAAAACAAGCCGTCGAACCAATAGGCTACGTGCAGGTCCTGGTGAAACTTACTCTTTCA
TAAAATAATGCGTACTCGGTGCGTAATGCATACCTGTCCGTACCCAAAAATGCTGGGCAG
■■Homology search results ■■ -
sp_hit_id Q2PC93
Definition sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus
Align length 131
Score (bit) 33.1
E-value 0.67
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914170|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_G06.
         (480 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    33   0.67 
sp|Q2VEI4|RPOB_SOLTU DNA-directed RNA polymerase subunit beta OS...    31   3.4  
sp|Q2MIA8|RPOB_SOLLC DNA-directed RNA polymerase subunit beta OS...    31   3.4  
sp|Q2MIJ5|RPOB_SOLBU DNA-directed RNA polymerase subunit beta OS...    31   3.4  
sp|Q06RD9|RPOB_JASNU DNA-directed RNA polymerase subunit beta OS...    30   4.4  
sp|Q33C46|RPOB_NICTO DNA-directed RNA polymerase subunit beta OS...    30   5.7  
sp|Q61DA8|RM23_CAEBR Probable 39S ribosomal protein L23, mitocho...    30   5.7  
sp|P06271|RPOB_TOBAC DNA-directed RNA polymerase subunit beta OS...    30   7.5  
sp|Q3C1G7|RPOB_NICSY DNA-directed RNA polymerase subunit beta OS...    30   7.5  
sp|A7Y3B9|RPOB_IPOPU DNA-directed RNA polymerase subunit beta OS...    30   7.5  
sp|Q8S8X9|RPOB_ATRBE DNA-directed RNA polymerase subunit beta OS...    30   7.5  
sp|Q9GYS9|RM23_CAEEL Probable 39S ribosomal protein L23, mitocho...    30   7.5  
sp|Q04976|VEXA_SALTI Vi polysaccharide export protein vexA/tviF ...    29   9.6  
sp|Q8BGV0|SYNM_MOUSE Probable asparaginyl-tRNA synthetase, mitoc...    29   9.6  
sp|Q14767|LTBP2_HUMAN Latent-transforming growth factor beta-bin...    29   9.6  
sp|Q7SCP4|CAPZB_NEUCR F-actin-capping protein subunit beta OS=Ne...    29   9.6  
sp|Q4INI2|CAPZB_GIBZE F-actin-capping protein subunit beta OS=Gi...    29   9.6  
sp|Q6BLM0|ATG15_DEBHA Putative lipase ATG15 OS=Debaryomyces hans...    29   9.6  
sp|Q9BBS9|RPOB_LOTJA DNA-directed RNA polymerase subunit beta OS...    29   9.8  
sp|P19041|NU1M_PODAN NADH-ubiquinone oxidoreductase chain 1 OS=P...    29   9.8  
sp|Q62784|INP4A_RAT Type I inositol-3,4-bisphosphate 4-phosphata...    29   9.8  

>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 33.1 bits (74), Expect = 0.67
 Identities = 35/131 (26%), Positives = 50/131 (38%), Gaps = 14/131 (10%)
 Frame = -2

Query: 479  CPAFLGTDRYALRTEYALFYERVSFTRT----------CT*PIGSTACFNKLAGAKRLPE 330
            CPA     R   +   AL +   SF  T          C+ P G T    +L GA   P 
Sbjct: 780  CPALAAYARECAQEGAALSWRNESFCGTQCRGGQVYQECSSPCGRTCADLRLDGASSCPS 839

Query: 329  LGQGIIAAQNCPV-PIL--GCKFTYADWLLCQH-TRVWAGGVQAAKASLKWLQEAHRNTS 162
            L    ++  NCP  P+L  G +        CQH ++++  G +  +     +  A    S
Sbjct: 840  LDNICVSGCNCPEGPVLDDGGQCVPPGVCPCQHSSQLYPAGSKIRQGCNACMCTA-GTWS 898

Query: 161  CTPLPCSSKFF 129
            CT  PC    F
Sbjct: 899  CTDAPCPDAAF 909


>sp|Q2VEI4|RPOB_SOLTU DNA-directed RNA polymerase subunit beta
           OS=Solanum tuberosum GN=rpoB PE=3 SV=1
          Length = 1070

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S+S H  +G W +    F+E++ RST   +LY
Sbjct: 430 INVGLIGSLSIHARIGHWGSLESPFYEISERSTGVRMLY 468


>sp|Q2MIA8|RPOB_SOLLC DNA-directed RNA polymerase subunit beta
           OS=Solanum lycopersicum GN=rpoB PE=3 SV=1
          Length = 1070

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S+S H  +G W +    F+E++ RST   +LY
Sbjct: 430 INVGLIGSLSIHARIGHWGSLESPFYEISERSTGVRMLY 468


>sp|Q2MIJ5|RPOB_SOLBU DNA-directed RNA polymerase subunit beta
           OS=Solanum bulbocastanum GN=rpoB PE=3 SV=1
          Length = 1070

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 13/39 (33%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S+S H  +G W +    F+E++ RST   +LY
Sbjct: 430 INVGLIGSLSIHARIGHWGSLESPFYEISERSTGVRMLY 468


>sp|Q06RD9|RPOB_JASNU DNA-directed RNA polymerase subunit beta
           OS=Jasminum nudiflorum GN=rpoB PE=3 SV=1
          Length = 1064

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S++ H  +G W +    F+E++ RST   +LY
Sbjct: 432 INVGLIGSLAIHAKIGHWGSLESPFYEISERSTGVQMLY 470


>sp|Q33C46|RPOB_NICTO DNA-directed RNA polymerase subunit beta
           OS=Nicotiana tomentosiformis GN=rpoB PE=3 SV=1
          Length = 1070

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S++ H  +G W +    F+E++ RST   +LY
Sbjct: 430 INVGLIGSLAIHAKIGHWGSLESPFYEISERSTGVRMLY 468


>sp|Q61DA8|RM23_CAEBR Probable 39S ribosomal protein L23,
           mitochondrial OS=Caenorhabditis briggsae GN=CBG12563
           PE=3 SV=1
          Length = 159

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 271 NLQPKIGTGQFWAAMIPCPSSGRRLAPASLLKQAVEP 381
           N Q ++    FW A+I  PS GR   P + +K  V+P
Sbjct: 13  NPQRRVFLPDFWMAVIESPSVGRNKLPRNCVKFEVDP 49


>sp|P06271|RPOB_TOBAC DNA-directed RNA polymerase subunit beta
           OS=Nicotiana tabacum GN=rpoB PE=3 SV=1
          Length = 1070

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S++ H  +G W +    F+E++ RST   +LY
Sbjct: 430 INVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLY 468


>sp|Q3C1G7|RPOB_NICSY DNA-directed RNA polymerase subunit beta
           OS=Nicotiana sylvestris GN=rpoB PE=3 SV=1
          Length = 1070

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S++ H  +G W +    F+E++ RST   +LY
Sbjct: 430 INVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLY 468


>sp|A7Y3B9|RPOB_IPOPU DNA-directed RNA polymerase subunit beta
           OS=Ipomoea purpurea GN=rpoB PE=3 SV=1
          Length = 1067

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 273 IHLCRLASVSTHPSLGGWCASSQSFFEVATRSTSQYILY 157
           I++  + S++ H  +G W +    F+E++ RST   +LY
Sbjct: 427 INVGLIGSLAIHARIGHWGSLESPFYEISERSTGVRMLY 465
tr_hit_id Q7PRC0
Definition tr|Q7PRC0|Q7PRC0_ANOGA AGAP002534-PA OS=Anopheles gambiae
Align length 44
Score (bit) 35.8
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914170|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_G06.
         (480 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7PRC0|Q7PRC0_ANOGA AGAP002534-PA OS=Anopheles gambiae GN=AGA...    36   1.1  
tr|B7GC83|B7GC83_PHATR Predicted protein OS=Phaeodactylum tricor...    34   3.2  
tr|B4LE43|B4LE43_DROVI GJ13605 OS=Drosophila virilis GN=GJ13605 ...    34   4.1  
tr|B1SAZ3|B1SAZ3_9BIFI Putative uncharacterized protein OS=Bifid...    33   9.2  

>tr|Q7PRC0|Q7PRC0_ANOGA AGAP002534-PA OS=Anopheles gambiae
           GN=AGAP002534 PE=4 SV=2
          Length = 234

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 20/44 (45%), Positives = 29/44 (65%)
 Frame = -2

Query: 194 KWLQEAHRNTSCTPLPCSSKFFHKKSTFGSVKQADGSLIKLLTR 63
           KW+ +A  +T  TPL   S+ FHK S  G  + A+GSL+KL+T+
Sbjct: 184 KWMPDADTST-WTPLEFLSELFHKWSK-GEERPANGSLVKLITK 225


>tr|B7GC83|B7GC83_PHATR Predicted protein OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_49896 PE=4 SV=1
          Length = 576

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = -2

Query: 254 LLCQHTRVWAGGVQAAKASLKWLQEAHRNTSCTPLPCSSKFFHKKSTFGSVKQA 93
           ++   TRVW   ++  + +L+WLQ    + SC     SSKF +  +       A
Sbjct: 483 VMADQTRVWRKRLRRQERALQWLQSVEADQSCVAEAASSKFLNTNTAVSRAPNA 536


>tr|B4LE43|B4LE43_DROVI GJ13605 OS=Drosophila virilis GN=GJ13605
           PE=4 SV=1
          Length = 552

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 36/132 (27%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
 Frame = +3

Query: 30  TFTFAKLLVASSCEQLDERAICLLDRPKCGFLVKEFGATWKGCTGCIAMCFL*P------ 191
           TFT       + C  L  RA+C   R K  F+V         C  C A+ +  P      
Sbjct: 222 TFTVTLERYVAVCHPLRARALCTYGRAKIYFIV---------CV-CFALAYNMPRFWEVL 271

Query: 192 -----LQRSFGCLHTTRPNSGVLTQKPVGISEFAAQNWHWTILGSDDPLPKLGQAFSSC* 356
                L  S   LH  RP+   L + P  I+ +     HW  L  +  +P L  A  +C 
Sbjct: 272 TVSYQLPNSTDVLHCVRPSP--LRRNPTYINIYI----HWCYLIVNYIIPFLTLAILNCL 325

Query: 357 LIKTSRRTNRLR 392
           + +  +R NR R
Sbjct: 326 IYRQVKRANRER 337


>tr|B1SAZ3|B1SAZ3_9BIFI Putative uncharacterized protein
           OS=Bifidobacterium dentium ATCC 27678 GN=BIFDEN_01290
           PE=4 SV=1
          Length = 450

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 21/62 (33%), Positives = 32/62 (51%)
 Frame = -2

Query: 362 NKLAGAKRLPELGQGIIAAQNCPVPILGCKFTYADWLLCQHTRVWAGGVQAAKASLKWLQ 183
           N++  A+ L +L   II AQN    I GC+ + +D +L QH R  +  +   K + K L 
Sbjct: 219 NQVMDAQTLTKLNDAIIKAQNVKT-IGGCEASQSDSVLRQHARSMSKQISGIKETTKALT 277

Query: 182 EA 177
            A
Sbjct: 278 SA 279