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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914174
Clone id YMU001_000042_H02
Library
Length 529
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTCCCATGTGCCAACCTTGCCCACAAAAGAATTGCCTCCAATAGTTTGACCTGTATAACA
ATGGTGTGGCCTGCTCAATTCGCTCGAGAACTGAGCCTCACTAATCTTGCAATAGCTGCT
AATGCTGCTGCTGTCATATGCCATTGACAAAAACAGAGCCCCCTATTTCACAACTTCATC
ATCGTTGAAACTGCACAATAATTATGGAAAATGCCTAAACGATAATTGAAGAAGGCCTTT
ATCCTCCCACTCCACAAAAACTTGCTTGCCCAAGTGACTATACAATACTGTAGTTCCAAA
AGGGGGAATAGGAGCACAGATGGCTAAGAACTACGGCGCATCAATCTTAATAAGCAATCC
ACTTTCGCCCACTGCCCCATTTGGTGCTTCAGAATCGCCAAATTGACTATGAGCTGAGGC
AGGGATAACTGACATAGATCGTAGGTCTTGTACTGTTGCATTGCAAAAGAAGCACCTTTG
GTTGTTTAGAAGATGTCTCGAAATGCACCACCAGCAAGATCTGTGGTTA
■■Homology search results ■■ -
sp_hit_id Q5XPI3
Definition sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus musculus
Align length 25
Score (bit) 42.7
E-value 0.001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914174|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_H02.
         (529 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus ...    43   0.001
sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo...    41   0.003
sp|Q5R7B4|STRA6_PONAB Stimulated by retinoic acid gene 6 protein...    32   2.5  
sp|P10184|IOV7_CHICK Ovoinhibitor OS=Gallus gallus GN=OIH PE=1 SV=2    31   3.2  
sp|Q9BX79|STRA6_HUMAN Stimulated by retinoic acid gene 6 protein...    31   4.2  
sp|Q8AXQ3|SH3B4_SERQU SH3 domain-binding protein 4 OS=Seriola qu...    30   5.5  

>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus
            musculus GN=Rnf123 PE=2 SV=1
          Length = 1314

 Score = 42.7 bits (99), Expect = 0.001
 Identities = 15/25 (60%), Positives = 21/25 (84%)
 Frame = -2

Query: 525  HRSCWWCISRHLLNNQRCFFCNATV 451
            H+SC  CI++HL+NN+ CFFC AT+
Sbjct: 1271 HKSCKACINQHLMNNKDCFFCKATI 1295


>sp|Q5XPI4|RN123_HUMAN E3 ubiquitin-protein ligase RNF123 OS=Homo
            sapiens GN=RNF123 PE=1 SV=1
          Length = 1314

 Score = 41.2 bits (95), Expect = 0.003
 Identities = 14/25 (56%), Positives = 20/25 (80%)
 Frame = -2

Query: 525  HRSCWWCISRHLLNNQRCFFCNATV 451
            H+SC  CI++HL+NN+ CFFC  T+
Sbjct: 1271 HKSCKACINQHLMNNKDCFFCKTTI 1295


>sp|Q5R7B4|STRA6_PONAB Stimulated by retinoic acid gene 6 protein
           homolog OS=Pongo abelii GN=STRA6 PE=2 SV=1
          Length = 667

 Score = 31.6 bits (70), Expect = 2.5
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 11/66 (16%)
 Frame = -2

Query: 420 ASAHSQFGDSEAPNGAVGESGLLIKIDAP*FLAICAPIPP-----------FGTTVLYSH 274
           ASA SQ G +EAP GA    GL        + A+C P+              G+T+ ++H
Sbjct: 130 ASAPSQDGKTEAPRGAWKILGLFY------YAALCYPLAACATAGHTAAHLLGSTLSWAH 183

Query: 273 LGKQVF 256
           LG QV+
Sbjct: 184 LGVQVW 189


>sp|P10184|IOV7_CHICK Ovoinhibitor OS=Gallus gallus GN=OIH PE=1 SV=2
          Length = 472

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = -2

Query: 507 CISRHLLNNQRCFFCNATVQDLRSMSVIPASA 412
           C S  +  + RCFFCNA VQ  R+++++  +A
Sbjct: 440 CGSDGVTYSNRCFFCNAYVQSNRTLNLVSMAA 471


>sp|Q9BX79|STRA6_HUMAN Stimulated by retinoic acid gene 6 protein
           homolog OS=Homo sapiens GN=STRA6 PE=1 SV=1
          Length = 667

 Score = 30.8 bits (68), Expect = 4.2
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
 Frame = -2

Query: 420 ASAHSQFGDSEAPNGAVGESGLLIKIDAP*FLAICAPIPP-----FGTTVLYSHLGKQVF 256
           ASA SQ G +EAP GA    GL         LA CA          G+T+ ++HLG QV+
Sbjct: 130 ASAPSQDGKTEAPRGAWKILGLFYYAALYYPLAACATAGHTAAHLLGSTLSWAHLGVQVW 189


>sp|Q8AXQ3|SH3B4_SERQU SH3 domain-binding protein 4 OS=Seriola
           quinqueradiata GN=sh3bp4 PE=2 SV=1
          Length = 966

 Score = 30.4 bits (67), Expect = 5.5
 Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
 Frame = +2

Query: 149 KNRAPYFTTSSSLKLHNNYGKCLNDN*RRPLSSHSTKTCLPK*LYNTVVPKGGIGAQMAK 328
           +N  P+  T+SS          LN   + PL  +S +  +   L++T+ P       +  
Sbjct: 158 QNGNPFAATNSSTN------PFLNGGPQSPLDQNSNEKSVDLLLFDTLAPSVPNSTSITA 211

Query: 329 N---YGASILISNPLSPTAPFG 385
           +   +G+ +L  NPLSPT   G
Sbjct: 212 DINGFGSGVLNMNPLSPTVGVG 233
tr_hit_id B8A3T8
Definition tr|B8A3T8|B8A3T8_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 26
Score (bit) 54.7
E-value 3.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914174|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_H02.
         (529 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8A3T8|B8A3T8_MAIZE Putative uncharacterized protein OS=Zea m...    55   3e-06
tr|Q9SIZ8|Q9SIZ8_ARATH Putative uncharacterized protein At2g2201...    54   5e-06
tr|A9RU48|A9RU48_PHYPA Predicted protein OS=Physcomitrella paten...    54   5e-06
tr|A9RFT1|A9RFT1_PHYPA Predicted protein OS=Physcomitrella paten...    52   1e-05
tr|Q7X8J6|Q7X8J6_ORYSJ Os07g0626900 protein OS=Oryza sativa subs...    52   2e-05
tr|A3BME6|A3BME6_ORYSJ Putative uncharacterized protein OS=Oryza...    52   2e-05
tr|A7PL24|A7PL24_VITVI Chromosome chr7 scaffold_20, whole genome...    51   4e-05
tr|A5C461|A5C461_VITVI Putative uncharacterized protein OS=Vitis...    51   4e-05
tr|A9SNH3|A9SNH3_PHYPA Predicted protein (Fragment) OS=Physcomit...    50   5e-05
tr|A9VAX3|A9VAX3_MONBE Predicted protein OS=Monosiga brevicollis...    48   3e-04
tr|B0S7J8|B0S7J8_DANRE Novel protein similar to human ring finge...    43   0.009
tr|A9JTT6|A9JTT6_XENTR Rnf123 protein (Fragment) OS=Xenopus trop...    43   0.009
tr|A5WUP0|A5WUP0_DANRE Novel protein similar to vertebrate ring ...    43   0.009
tr|A7RTP5|A7RTP5_NEMVE Predicted protein (Fragment) OS=Nematoste...    42   0.015
tr|B3KU09|B3KU09_HUMAN cDNA FLJ39034 fis, clone NT2RP7008085, hi...    41   0.033
tr|Q296I2|Q296I2_DROPS GA19834 OS=Drosophila pseudoobscura pseud...    40   0.096
tr|B4GF46|B4GF46_DROPE GL21687 OS=Drosophila persimilis GN=GL216...    40   0.096
tr|B4JV24|B4JV24_DROGR GH14527 OS=Drosophila grimshawi GN=GH1452...    39   0.13 
tr|Q9VFC4|Q9VFC4_DROME CG6752 OS=Drosophila melanogaster GN=CG67...    39   0.16 
tr|Q8SZS1|Q8SZS1_DROME LD30968p OS=Drosophila melanogaster GN=CG...    39   0.16 
tr|B4QZ49|B4QZ49_DROSI GD20379 OS=Drosophila simulans GN=GD20379...    39   0.16 
tr|B4PS87|B4PS87_DROYA GE26408 OS=Drosophila yakuba GN=GE26408 P...    39   0.16 
tr|B4NKT3|B4NKT3_DROWI GK13978 OS=Drosophila willistoni GN=GK139...    39   0.16 
tr|B4LZW6|B4LZW6_DROVI GJ23222 OS=Drosophila virilis GN=GJ23222 ...    39   0.16 
tr|B4HE16|B4HE16_DROSE GM25803 OS=Drosophila sechellia GN=GM2580...    39   0.16 
tr|B3P0R0|B3P0R0_DROER GG20869 OS=Drosophila erecta GN=GG20869 P...    39   0.16 
tr|B7PGT6|B7PGT6_IXOSC Putative uncharacterized protein OS=Ixode...    38   0.37 
tr|B4KDK4|B4KDK4_DROMO GI23662 OS=Drosophila mojavensis GN=GI236...    38   0.37 
tr|Q172Z5|Q172Z5_AEDAE Putative uncharacterized protein (Fragmen...    37   0.48 
tr|B3M1B4|B3M1B4_DROAN GF17158 OS=Drosophila ananassae GN=GF1715...    37   0.62 

>tr|B8A3T8|B8A3T8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 333

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 22/26 (84%), Positives = 24/26 (92%)
 Frame = -2

Query: 528 NHRSCWWCISRHLLNNQRCFFCNATV 451
           +HRSC+ CISRHLLNNQRCFFCNA V
Sbjct: 303 HHRSCFGCISRHLLNNQRCFFCNAVV 328


>tr|Q9SIZ8|Q9SIZ8_ARATH Putative uncharacterized protein At2g22010
           OS=Arabidopsis thaliana GN=At2g22010 PE=2 SV=1
          Length = 343

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = -2

Query: 528 NHRSCWWCISRHLLNNQRCFFCNATVQDL 442
           +HRSC+ CI+RHLLN QRCFFCNATV D+
Sbjct: 296 SHRSCYGCITRHLLNCQRCFFCNATVIDV 324


>tr|A9RU48|A9RU48_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_70590 PE=4 SV=1
          Length = 1213

 Score = 53.9 bits (128), Expect = 5e-06
 Identities = 22/36 (61%), Positives = 26/36 (72%)
 Frame = -2

Query: 525  HRSCWWCISRHLLNNQRCFFCNATVQDLRSMSVIPA 418
            H+SC  CISRHLLNNQRCFFCN+T+     +   PA
Sbjct: 1174 HKSCQRCISRHLLNNQRCFFCNSTIIKFSPIQATPA 1209


>tr|A9RFT1|A9RFT1_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_113448 PE=4 SV=1
          Length = 1354

 Score = 52.4 bits (124), Expect = 1e-05
 Identities = 28/56 (50%), Positives = 36/56 (64%), Gaps = 1/56 (1%)
 Frame = -2

Query: 525  HRSCWWCISRHLLNNQRCFFCNATVQDLRSMSVIPASAHSQFGDSEA-PNGAVGES 361
            H+SC  CISRHLLN+Q+CFFCN+T+  L  M   PA    + G+  A PN  + ES
Sbjct: 1294 HKSCQRCISRHLLNSQQCFFCNSTIIKLSFMLPTPA---IEDGECPADPNKGLAES 1346


>tr|Q7X8J6|Q7X8J6_ORYSJ Os07g0626900 protein OS=Oryza sativa subsp.
           japonica GN=OJ1339_F05.133 PE=4 SV=1
          Length = 259

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = -2

Query: 528 NHRSCWWCISRHLLNNQRCFFCNATV 451
           +HRSC+ CI+RHLLN+QRCFFCNA V
Sbjct: 215 HHRSCYGCITRHLLNSQRCFFCNAVV 240


>tr|A3BME6|A3BME6_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_024218 PE=4 SV=1
          Length = 1223

 Score = 52.0 bits (123), Expect = 2e-05
 Identities = 20/26 (76%), Positives = 24/26 (92%)
 Frame = -2

Query: 528  NHRSCWWCISRHLLNNQRCFFCNATV 451
            +HRSC+ CI+RHLLN+QRCFFCNA V
Sbjct: 1179 HHRSCYGCITRHLLNSQRCFFCNAVV 1204


>tr|A7PL24|A7PL24_VITVI Chromosome chr7 scaffold_20, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00019405001
            PE=4 SV=1
          Length = 1276

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -2

Query: 528  NHRSCWWCISRHLLNNQRCFFCNATVQDLRSM 433
            +H SC+ CI+RHLLN QRCFFCNATV ++  M
Sbjct: 1240 SHTSCFGCITRHLLNCQRCFFCNATVAEVVRM 1271


>tr|A5C461|A5C461_VITVI Putative uncharacterized protein OS=Vitis
            vinifera GN=VITISV_022486 PE=4 SV=1
          Length = 1219

 Score = 50.8 bits (120), Expect = 4e-05
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = -2

Query: 528  NHRSCWWCISRHLLNNQRCFFCNATVQDLRSM 433
            +H SC+ CI+RHLLN QRCFFCNATV ++  M
Sbjct: 1183 SHTSCFGCITRHLLNCQRCFFCNATVAEVVRM 1214


>tr|A9SNH3|A9SNH3_PHYPA Predicted protein (Fragment) OS=Physcomitrella
            patens subsp. patens GN=PHYPADRAFT_10281 PE=4 SV=1
          Length = 1241

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 20/25 (80%), Positives = 22/25 (88%)
 Frame = -2

Query: 525  HRSCWWCISRHLLNNQRCFFCNATV 451
            H+SC  CISRHLLNNQRCFFCN+ V
Sbjct: 1214 HKSCQRCISRHLLNNQRCFFCNSNV 1238


>tr|A9VAX3|A9VAX3_MONBE Predicted protein OS=Monosiga brevicollis
            GN=29379 PE=4 SV=1
          Length = 1315

 Score = 48.1 bits (113), Expect = 3e-04
 Identities = 19/31 (61%), Positives = 23/31 (74%)
 Frame = -2

Query: 525  HRSCWWCISRHLLNNQRCFFCNATVQDLRSM 433
            HRSC  CI RHLLN+ +CFFCN  V+  R+M
Sbjct: 1019 HRSCEMCIQRHLLNSTKCFFCNEPVKSARAM 1049