NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914175
Clone id YMU001_000042_H03
Library
Length 295
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000042_H03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GTACCGGATTCAAAGCTGTCACAAGCATCAAGGACTGTCACAAGAAACCCACCTCAGTTA
ATGACAGTTTTAAACGAATGATATTTTACTTTACATTTTACTTGGAACAATTTTTTTCAC
CAACCTCTCGTACAATCTGTGAGATCTTGCGCCGATTGGGTTCTATACCAACGACACAAT
TTTTCCTAAACGACTCTGATGCGTCTCCTAGCAAGCGCAAAGACTGCAAGAACAGGAACC
TCATTAAGGCAACAGTTTATGTTTGCCTTGAACAATAATCGTCCCTCCTTTACCT
■■Homology search results ■■ -
sp_hit_id Q83ML8
Definition sp|Q83ML8|FUMC_SHIFL Fumarate hydratase class II OS=Shigella flexneri
Align length 36
Score (bit) 52.8
E-value 5.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914175|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_H03.
         (295 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q83ML8|FUMC_SHIFL Fumarate hydratase class II OS=Shigella fle...    53   5e-07
sp|P05042|FUMC_ECOLI Fumarate hydratase class II OS=Escherichia ...    53   5e-07
sp|Q8FHA7|FUMC_ECOL6 Fumarate hydratase class II OS=Escherichia ...    53   5e-07
sp|Q8X769|FUMC_ECO57 Fumarate hydratase class II OS=Escherichia ...    53   5e-07
sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial OS=Rhizop...    52   9e-07
sp|Q8ZPL7|FUMC_SALTY Fumarate hydratase class II OS=Salmonella t...    49   6e-06
sp|Q7N4H8|FUMC_PHOLL Fumarate hydratase class II OS=Photorhabdus...    49   1e-05
sp|Q7W0A2|FUMC_BORPE Fumarate hydratase class II OS=Bordetella p...    49   1e-05
sp|Q7W4N9|FUMC_BORPA Fumarate hydratase class II OS=Bordetella p...    49   1e-05
sp|Q7WG65|FUMC_BORBR Fumarate hydratase class II OS=Bordetella b...    49   1e-05
sp|Q8XQE8|FUMC_RALSO Fumarate hydratase class II OS=Ralstonia so...    48   2e-05
sp|O25883|FUMC_HELPY Fumarate hydratase class II OS=Helicobacter...    48   2e-05
sp|Q9FI53|FUM2_ARATH Fumarate hydratase 2, chloroplastic OS=Arab...    48   2e-05
sp|P93033|FUM1_ARATH Fumarate hydratase 1, mitochondrial OS=Arab...    47   2e-05
sp|O94552|FUMH_SCHPO Fumarate hydratase, mitochondrial OS=Schizo...    47   3e-05
sp|Q7SX99|FUMH_DANRE Fumarate hydratase, mitochondrial OS=Danio ...    47   3e-05
sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial OS=Rattus n...    47   4e-05
sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial OS=Mus mu...    47   4e-05
sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial OS=Macaca...    47   4e-05
sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo s...    47   4e-05
sp|Q9ZJQ9|FUMC_HELPJ Fumarate hydratase class II OS=Helicobacter...    47   4e-05
sp|Q8ZEB6|FUMC_YERPE Fumarate hydratase class II OS=Yersinia pes...    46   7e-05
sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial OS=Sus scro...    45   9e-05
sp|Q8DIP7|FUMC_THEEB Fumarate hydratase class II OS=Thermosynech...    45   9e-05
sp|Q8Z6R6|FUMC_SALTI Fumarate hydratase class II OS=Salmonella t...    45   9e-05
sp|Q8D2L3|FUMC_WIGBR Fumarate hydratase class II OS=Wigglesworth...    45   1e-04
sp|Q54VA2|FUMH_DICDI Fumarate hydratase, mitochondrial OS=Dictyo...    44   2e-04
sp|P95331|FUMC_MYXXD Fumarate hydratase class II OS=Myxococcus x...    44   3e-04
sp|O69294|FUMC_CAMJE Fumarate hydratase class II OS=Campylobacte...    44   3e-04
sp|Q9JTR0|FUMC_NEIMA Fumarate hydratase class II OS=Neisseria me...    43   6e-04

>sp|Q83ML8|FUMC_SHIFL Fumarate hydratase class II OS=Shigella
           flexneri GN=fumC PE=3 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>sp|P05042|FUMC_ECOLI Fumarate hydratase class II OS=Escherichia
           coli (strain K12) GN=fumC PE=1 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>sp|Q8FHA7|FUMC_ECOL6 Fumarate hydratase class II OS=Escherichia
           coli O6 GN=fumC PE=3 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>sp|Q8X769|FUMC_ECO57 Fumarate hydratase class II OS=Escherichia
           coli O157:H7 GN=fumC PE=3 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 5e-07
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial OS=Rhizopus
           oryzae GN=FUMR PE=3 SV=1
          Length = 494

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 33/75 (44%), Positives = 38/75 (50%)
 Frame = -1

Query: 229 LQSLRLLGDASESFRKNCVVGIEPNRRKISQIVREVGEKNCSK*NVK*NIIRLKLSLTEV 50
           +QS+RL+ DAS SF KNCVVGIE N +KIS I+ E                         
Sbjct: 400 IQSIRLISDASISFTKNCVVGIEANEKKISSIMNE------------------------- 434

Query: 49  GFL*QSLMLVTALNP 5
                SLMLVTALNP
Sbjct: 435 -----SLMLVTALNP 444


>sp|Q8ZPL7|FUMC_SALTY Fumarate hydratase class II OS=Salmonella
           typhimurium GN=fumC PE=3 SV=1
          Length = 467

 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQ++RLL D  ESF K+C  GIEPNR +I+Q++ E
Sbjct: 369 FLQTVRLLADGMESFNKHCASGIEPNRERITQLLNE 404


>sp|Q7N4H8|FUMC_PHOLL Fumarate hydratase class II OS=Photorhabdus
           luminescens subsp. laumondii GN=fumC PE=3 SV=1
          Length = 464

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D   SF ++C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMRSFNEHCAVGIEPNRDRITQLLNE 404


>sp|Q7W0A2|FUMC_BORPE Fumarate hydratase class II OS=Bordetella
           pertussis GN=fumC PE=3 SV=1
          Length = 463

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/76 (39%), Positives = 37/76 (48%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVREVGEKNCSK*NVK*NIIRLKLSLTE 53
           FLQS+RLL D   SF K+C  GIEPNR +I+++V                          
Sbjct: 368 FLQSVRLLADGMVSFDKHCAAGIEPNRERITELVE------------------------- 402

Query: 52  VGFL*QSLMLVTALNP 5
                +SLMLVTALNP
Sbjct: 403 -----RSLMLVTALNP 413


>sp|Q7W4N9|FUMC_BORPA Fumarate hydratase class II OS=Bordetella
           parapertussis GN=fumC PE=3 SV=1
          Length = 463

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/76 (39%), Positives = 37/76 (48%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVREVGEKNCSK*NVK*NIIRLKLSLTE 53
           FLQS+RLL D   SF K+C  GIEPNR +I+++V                          
Sbjct: 368 FLQSVRLLADGMVSFDKHCAAGIEPNRERITELVE------------------------- 402

Query: 52  VGFL*QSLMLVTALNP 5
                +SLMLVTALNP
Sbjct: 403 -----RSLMLVTALNP 413


>sp|Q7WG65|FUMC_BORBR Fumarate hydratase class II OS=Bordetella
           bronchiseptica GN=fumC PE=3 SV=1
          Length = 463

 Score = 48.5 bits (114), Expect = 1e-05
 Identities = 30/76 (39%), Positives = 37/76 (48%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVREVGEKNCSK*NVK*NIIRLKLSLTE 53
           FLQS+RLL D   SF K+C  GIEPNR +I+++V                          
Sbjct: 368 FLQSVRLLADGMVSFDKHCAAGIEPNRERITELVE------------------------- 402

Query: 52  VGFL*QSLMLVTALNP 5
                +SLMLVTALNP
Sbjct: 403 -----RSLMLVTALNP 413
tr_hit_id Q32FG7
Definition tr|Q32FG7|Q32FG7_SHIDS Fumarase C OS=Shigella dysenteriae serotype 1 (strain Sd197)
Align length 76
Score (bit) 55.1
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914175|Adiantum capillus-veneris mRNA, clone:
YMU001_000042_H03.
         (295 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q32FG7|Q32FG7_SHIDS Fumarase C OS=Shigella dysenteriae seroty...    55   2e-06
tr|A9S5C6|A9S5C6_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|B3WXW3|B3WXW3_SHIDY Fumarate hydratase OS=Shigella dysenteria...    54   5e-06
tr|Q6FB44|Q6FB44_ACIAD Fumarase C (Fumarate hydratase Class II) ...    53   9e-06
tr|Q3Z1W4|Q3Z1W4_SHISS Fumarase C OS=Shigella sonnei (strain Ss0...    53   9e-06
tr|Q320W7|Q320W7_SHIBS Fumarase C OS=Shigella boydii serotype 4 ...    53   9e-06
tr|Q1RBI7|Q1RBI7_ECOUT Fumarate hydratase class II OS=Escherichi...    53   9e-06
tr|Q0THL7|Q0THL7_ECOL5 Fumarate hydratase class II OS=Escherichi...    53   9e-06
tr|Q0T4G5|Q0T4G5_SHIF8 Fumarate hydratase OS=Shigella flexneri s...    53   9e-06
tr|B6IB45|B6IB45_ECOSE Fumarase class II OS=Escherichia coli (st...    53   9e-06
tr|B5Z447|B5Z447_ECO5E Fumarate hydratase OS=Escherichia coli O1...    53   9e-06
tr|B2U1S0|B2U1S0_SHIB3 Fumarate hydratase OS=Shigella boydii ser...    53   9e-06
tr|B1XF76|B1XF76_ECODH Fumarate hydratase (Fumarase C),aerobic C...    53   9e-06
tr|B1LES5|B1LES5_ECOSM Fumarate hydratase OS=Escherichia coli (s...    53   9e-06
tr|B1IQE2|B1IQE2_ECOLC Fumarate hydratase, class II OS=Escherich...    53   9e-06
tr|A8A0F3|A8A0F3_ECOHS Fumarate hydratase OS=Escherichia coli O9...    53   9e-06
tr|A7ZM71|A7ZM71_ECO24 Fumarate hydratase OS=Escherichia coli O1...    53   9e-06
tr|A1ABF6|A1ABF6_ECOK1 Fumarate hydratase class II OS=Escherichi...    53   9e-06
tr|B8JWU5|B8JWU5_ECOLX Fumarate hydratase class II OS=Escherichi...    53   9e-06
tr|B7URV1|B7URV1_ECO27 Fumarate hydratase (Fumarase C), aerobic ...    53   9e-06
tr|B7NU24|B7NU24_ECOLX Fumarate hydratase (Fumarase C),aerobic C...    53   9e-06
tr|B7NB64|B7NB64_ECOLX Fumarate hydratase (Fumarase C),aerobic C...    53   9e-06
tr|B7MV87|B7MV87_ECOLX Fumarate hydratase (Fumarase C),aerobic C...    53   9e-06
tr|B7M9W4|B7M9W4_ECOLX Fumarate hydratase (Fumarase C),aerobic C...    53   9e-06
tr|B7L5G3|B7L5G3_ECOLX Fumarate hydratase (Fumarase C),aerobic C...    53   9e-06
tr|B7A2E1|B7A2E1_ECO57 Fumarate hydratase OS=Escherichia coli O1...    53   9e-06
tr|B3XAF7|B3XAF7_ECOLX Fumarate hydratase OS=Escherichia coli 10...    53   9e-06
tr|B3WGW6|B3WGW6_ECOLX Fumarate hydratase OS=Escherichia coli B1...    53   9e-06
tr|B3INH3|B3INH3_ECOLX Fumarate hydratase OS=Escherichia coli E1...    53   9e-06
tr|B3I8N6|B3I8N6_ECOLX Fumarate hydratase OS=Escherichia coli E2...    53   9e-06

>tr|Q32FG7|Q32FG7_SHIDS Fumarase C OS=Shigella dysenteriae serotype
           1 (strain Sd197) GN=fumC PE=4 SV=1
          Length = 467

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 33/76 (43%), Positives = 39/76 (51%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVREVGEKNCSK*NVK*NIIRLKLSLTE 53
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E                        
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE------------------------ 404

Query: 52  VGFL*QSLMLVTALNP 5
                 SLMLVTALNP
Sbjct: 405 ------SLMLVTALNP 414


>tr|A9S5C6|A9S5C6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_181428 PE=4 SV=1
          Length = 500

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 34/75 (45%), Positives = 39/75 (52%)
 Frame = -1

Query: 229 LQSLRLLGDASESFRKNCVVGIEPNRRKISQIVREVGEKNCSK*NVK*NIIRLKLSLTEV 50
           LQS+ LLGDA+ESFRKNCVVGIE NR  I  ++R                          
Sbjct: 407 LQSMVLLGDAAESFRKNCVVGIEANRNHIDNLMR-------------------------- 440

Query: 49  GFL*QSLMLVTALNP 5
               +SLMLVTALNP
Sbjct: 441 ----RSLMLVTALNP 451


>tr|B3WXW3|B3WXW3_SHIDY Fumarate hydratase OS=Shigella dysenteriae
           1012 GN=fumC PE=4 SV=1
          Length = 467

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 24/41 (58%), Positives = 32/41 (78%)
 Frame = -1

Query: 247 LMRFLFLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           L+ + FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 364 LVIYNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>tr|Q6FB44|Q6FB44_ACIAD Fumarase C (Fumarate hydratase Class II)
           OS=Acinetobacter sp. (strain ADP1) GN=fumC PE=4 SV=1
          Length = 464

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 34/82 (41%), Positives = 40/82 (48%)
 Frame = -1

Query: 247 LMRFLFLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVREVGEKNCSK*NVK*NIIRLK 68
           ++ F  LQS++LLGDA  SF ++C VGIEPNR KI                         
Sbjct: 363 VIAFNLLQSIQLLGDACNSFNEHCAVGIEPNREKIDY----------------------- 399

Query: 67  LSLTEVGFL*QSLMLVTALNPV 2
                  FL  SLMLVTALNPV
Sbjct: 400 -------FLHNSLMLVTALNPV 414


>tr|Q3Z1W4|Q3Z1W4_SHISS Fumarase C OS=Shigella sonnei (strain Ss046)
           GN=fumC PE=4 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>tr|Q320W7|Q320W7_SHIBS Fumarase C OS=Shigella boydii serotype 4
           (strain Sb227) GN=fumC PE=4 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>tr|Q1RBI7|Q1RBI7_ECOUT Fumarate hydratase class II OS=Escherichia
           coli (strain UTI89 / UPEC) GN=fumC PE=4 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>tr|Q0THL7|Q0THL7_ECOL5 Fumarate hydratase class II OS=Escherichia
           coli O6:K15:H31 (strain 536 / UPEC) GN=ECP_1555 PE=4
           SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>tr|Q0T4G5|Q0T4G5_SHIF8 Fumarate hydratase OS=Shigella flexneri
           serotype 5b (strain 8401) GN=fumC PE=4 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404


>tr|B6IB45|B6IB45_ECOSE Fumarase class II OS=Escherichia coli
           (strain SE11) GN=ECSE_1732 PE=4 SV=1
          Length = 467

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 23/36 (63%), Positives = 29/36 (80%)
 Frame = -1

Query: 232 FLQSLRLLGDASESFRKNCVVGIEPNRRKISQIVRE 125
           FLQS+RLL D  ESF K+C VGIEPNR +I+Q++ E
Sbjct: 369 FLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNE 404