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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914180
Clone id YMU001_000056_A01
Library
Length 326
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGGGCCTCAATCCCAATTTCACTGCTTCACCCCCCCACAGCTATCTTACAACGGATCATT
TCCTTTAGCCCCTCCCTCATCAGATGCTCCCACAAAGTACCTTATGAGGGGGCAGCTCCC
TTCCGTCCAAATGAAGAAGCTGCTCTACTTACAACAATATGCAGATCTCTTCTTCGAGTT
TCTCTTTGCAACCGGTGTCGTCCTAGCCGTGCCTTCCCTGGTTTTTTCTTGAGTCTTTTT
TGGTTTCTGAGTTCCTTTTCCGCTGTTTTGTTGTTTGCTTCCGATTTGTCTTCGTGTCTA
TCCTCTCTTCATTATTCCTCTCATGA
■■Homology search results ■■ -
sp_hit_id Q63624
Definition sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19 OS=Rattus norvegicus
Align length 53
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914180|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_A01.
         (326 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19 OS=...    33   0.45 
sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19 O...    33   0.45 
sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain...    32   0.77 
sp|A8GNR5|HEM3_RICAH Porphobilinogen deaminase OS=Rickettsia aka...    30   2.9  
sp|A2AFE9|CX064_MOUSE Uncharacterized protein CXorf64 homolog OS...    30   2.9  
sp|Q9H7N4|SFR19_HUMAN Splicing factor, arginine/serine-rich 19 O...    30   5.0  
sp|Q6CFJ2|TOF1_YARLI Topoisomerase 1-associated factor 1 OS=Yarr...    29   6.5  
sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoid...    29   6.5  
sp|Q9UT00|YKH3_SCHPO Uncharacterized protein PYUK71.03c OS=Schiz...    29   8.5  
sp|Q21123|INX7_CAEEL Innexin-7 OS=Caenorhabditis elegans GN=inx-...    29   8.5  
sp|O74161|CHS5_CANAL Chitin biosynthesis protein CHS5 OS=Candida...    29   8.5  

>sp|Q63624|SFR19_RAT Splicing factor, arginine/serine-rich 19
            OS=Rattus norvegicus GN=Scaf1 PE=1 SV=2
          Length = 1258

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 309  KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSAYCC 151
            K+   + + G+K+    KG  KP KT++K R G + T      + KK  A  C
Sbjct: 847  KKTKAKAKAGAKKAKGTKGKTKPSKTRKKVRSGGSSTASGGPGSLKKSKADSC 899


>sp|Q5U4C3|SFR19_MOUSE Splicing factor, arginine/serine-rich 19 OS=Mus
            musculus GN=Scaf1 PE=1 SV=1
          Length = 1256

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -3

Query: 309  KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSAYCC 151
            K+   + + G+K+    KG  KP KT++K R G + T      + KK  A  C
Sbjct: 845  KKTKAKAKAGAKKAKGTKGKTKPSKTRKKVRSGGSSTASGGPGSLKKSKADSC 897


>sp|Q9DE13|BAZ2B_CHICK Bromodomain adjacent to zinc finger domain
            protein 2B OS=Gallus gallus GN=BAZ2B PE=2 SV=1
          Length = 2130

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 18/47 (38%), Positives = 26/47 (55%)
 Frame = -1

Query: 281  EANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRA 141
            EA  +  EKE+R Q+ +  K     L RHRL  E  RR  H+++ +A
Sbjct: 896  EAEKRIKEKEMRRQQAVLLK--HQELERHRLDMERERRRQHMMLMKA 940


>sp|A8GNR5|HEM3_RICAH Porphobilinogen deaminase OS=Rickettsia akari
           (strain Hartford) GN=hemC PE=3 SV=1
          Length = 301

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = +1

Query: 46  LQRIISFSPS---LIRCSHKVPYEG----AAPFRPNEEAALLTTICRSLLRVSLCNRCRP 204
           L+R+ +F+P    LI  SH +P  G    A   R N+ + L   IC  +  +  C   +P
Sbjct: 173 LKRLGAFNPEYCHLIEYSHMLPCVGQGVIAVEIRQNDNSML--EICNQINHLPTCELIKP 230

Query: 205 SRAF 216
            RAF
Sbjct: 231 ERAF 234


>sp|A2AFE9|CX064_MOUSE Uncharacterized protein CXorf64 homolog
           OS=Mus musculus PE=2 SV=1
          Length = 284

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 5   PQSQFHCFTPPQLSYNGSFPLAPPSSDAPTKY 100
           P S  HCF PPQ      FP+ P +  +P ++
Sbjct: 230 PCSSAHCFLPPQAPAFNPFPVMPTAFASPLRF 261


>sp|Q9H7N4|SFR19_HUMAN Splicing factor, arginine/serine-rich 19
            OS=Homo sapiens GN=SCAF1 PE=1 SV=2
          Length = 1312

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -3

Query: 309  KRG*TRRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSAYCC 151
            K+   + + G+K+    KG  KP KT++K R G        + + KK  A  C
Sbjct: 898  KKTKVKAKAGAKKTKGTKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSC 950


>sp|Q6CFJ2|TOF1_YARLI Topoisomerase 1-associated factor 1
           OS=Yarrowia lipolytica GN=TOF1 PE=3 SV=1
          Length = 1054

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 291 RQIGSKQQNSGKGTQKPKKTQEKTREGTARTT 196
           +Q  +KQ+   KGT K  + +EK R+ TA+TT
Sbjct: 874 KQQKTKQKLKRKGTSKSTREREKQRDYTAKTT 905


>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum
            GN=mybX PE=3 SV=1
          Length = 1620

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -3

Query: 288  QIGSKQQN-SGKGTQKPKKTQEKTREGTARTTPVAKRNS 175
            QI SK+QN +   ++KPK+T   T   T   TP+++ N+
Sbjct: 1339 QITSKEQNITTDQSEKPKETPTTTTPATLPATPISESNT 1377


>sp|Q9UT00|YKH3_SCHPO Uncharacterized protein PYUK71.03c
           OS=Schizosaccharomyces pombe GN=SPAPYUK71.03c PE=1 SV=1
          Length = 1225

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 291 RQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSA 160
           R  G++     K  Q PK ++EK+      T PV++R  +KR A
Sbjct: 70  RGSGARDLKVPKQMQAPKSSEEKSDVDGVPTRPVSERELRKRDA 113


>sp|Q21123|INX7_CAEEL Innexin-7 OS=Caenorhabditis elegans GN=inx-7
           PE=1 SV=1
          Length = 556

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = -3

Query: 279 SKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRS 163
           S+ +NS KG++KP  T++K    +++ +P +  NS++ S
Sbjct: 493 SEDENSKKGSKKPSPTKKK---ASSKNSPQSSSNSRRPS 528
tr_hit_id B8J1Q7
Definition tr|B8J1Q7|B8J1Q7_DESDE NLP/P60 protein OS=Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Align length 61
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914180|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_A01.
         (326 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8J1Q7|B8J1Q7_DESDE NLP/P60 protein OS=Desulfovibrio desulfur...    37   0.49 
tr|A2AUY3|A2AUY3_MOUSE Bromodomain adjacent to zinc finger domai...    36   0.83 
tr|A6R1R1|A6R1R1_AJECN Putative uncharacterized protein OS=Ajell...    36   1.1  
tr|Q22GW0|Q22GW0_TETTH Protein kinase domain containing protein ...    35   1.8  
tr|B3KZ60|B3KZ60_PLAKH Sin3 associated polypeptide p18-like prot...    35   2.4  
tr|Q8BWF5|Q8BWF5_MOUSE Hedgehog acyltransferase (Fragment) OS=Mu...    33   5.4  
tr|Q6IIU2|Q6IIU2_DROME HDC17098 OS=Drosophila melanogaster GN=HD...    33   5.4  
tr|B6R9P5|B6R9P5_9RHOB FAD binding domain protein OS=Pseudovibri...    33   7.0  

>tr|B8J1Q7|B8J1Q7_DESDE NLP/P60 protein OS=Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774
           GN=Ddes_1768 PE=3 SV=1
          Length = 325

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 22/61 (36%), Positives = 32/61 (52%)
 Frame = -1

Query: 287 KSEANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRAASSFGRKGAAP 108
           +S  ++ T EK +R   R KKKP K+R    R  + T  R+     +   +S  RKGAAP
Sbjct: 186 ESRLSDFTEEKVIRELARDKKKPAKSRAAATRDNKRTNTREKKRDATIQVASNDRKGAAP 245

Query: 107 S 105
           +
Sbjct: 246 A 246


>tr|A2AUY3|A2AUY3_MOUSE Bromodomain adjacent to zinc finger domain,
           2B (Fragment) OS=Mus musculus GN=Baz2b PE=4 SV=1
          Length = 296

 Score = 36.2 bits (82), Expect = 0.83
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -1

Query: 281 EANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRA 141
           EA  +T EKELR Q+ +  K     L RHRL  E  RR  H+++ +A
Sbjct: 133 EAEKRTKEKELRRQQAVLLK--HQELERHRLDMERERRRQHVMLMKA 177


>tr|A6R1R1|A6R1R1_AJECN Putative uncharacterized protein
           OS=Ajellomyces capsulata (strain NAm1 / WU24)
           GN=HCAG_03569 PE=4 SV=1
          Length = 1046

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = -1

Query: 281 EANNKTAEKELRNQKRLKKKPGKARLGRHRLQRETRRR 168
           E N K AE+E  N+KR + K  + RL R R++RE   R
Sbjct: 802 EKNRKAAEREFENKKRQRIKEVQERLRRERMEREEEER 839


>tr|Q22GW0|Q22GW0_TETTH Protein kinase domain containing protein
            OS=Tetrahymena thermophila SB210 GN=TTHERM_00655960 PE=4
            SV=1
          Length = 2818

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -3

Query: 294  RRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKRSA 160
            RRQ+ SK+Q   K  +K  + Q K +E  ++  P+ +RN  +RS+
Sbjct: 1893 RRQLNSKRQIKKKKDEKSNQNQIKAQESKSQLNPIPQRNLMRRSS 1937


>tr|B3KZ60|B3KZ60_PLAKH Sin3 associated polypeptide p18-like
           protein,putative OS=Plasmodium knowlesi (strain H)
           GN=PKH_010960 PE=4 SV=1
          Length = 748

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/66 (30%), Positives = 34/66 (51%)
 Frame = -1

Query: 269 KTAEKELRNQKRLKKKPGKARLGRHRLQRETRRRDLHIVVSRAASSFGRKGAAPS*GTLW 90
           KT+ ++ + +K+ +K+    R+ RH+ + E RRR       R+AS   R     S  +L+
Sbjct: 85  KTSNRKRKREKKTEKESSSHRMRRHKDRGEKRRRRTDHSHYRSASDISRNSHDRSGESLY 144

Query: 89  EHLMRE 72
            H  RE
Sbjct: 145 SHHSRE 150


>tr|Q8BWF5|Q8BWF5_MOUSE Hedgehog acyltransferase (Fragment) OS=Mus
           musculus GN=Hhat PE=2 SV=1
          Length = 367

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
 Frame = -3

Query: 297 TRRQIGSKQQNSGKGTQKPKKTQEKTREGTARTTP-VAKRNSKKRSAYCCK----*SSFF 133
           TR+Q   K+Q   K   K +K QE+ RE      P +A +N     ++C +     SSFF
Sbjct: 217 TRKQEREKEQEQEKQESKNEKKQEQEREKELVARPQLASKNDATAGSFCTRLFSPVSSFF 276

Query: 132 IWTEGSCPL 106
           I  + + PL
Sbjct: 277 ISPDNNNPL 285


>tr|Q6IIU2|Q6IIU2_DROME HDC17098 OS=Drosophila melanogaster
           GN=HDC17098 PE=4 SV=1
          Length = 243

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -3

Query: 285 IGSKQQNSGKGTQKPKKTQEKTREGTARTTPVAKRNSKKR 166
           +  K  N G+G Q P+KT++KT E TA+ T    +  K++
Sbjct: 9   VSMKSTNVGQGPQTPEKTEKKTAEKTAQKTEQPTKAKKEQ 48


>tr|B6R9P5|B6R9P5_9RHOB FAD binding domain protein OS=Pseudovibrio
           sp. JE062 GN=PJE062_1961 PE=4 SV=1
          Length = 503

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = +2

Query: 17  FHCFTPPQLSYNGSFPLAPPSSDAPTKYLMRGQLPSVQMKK 139
           +H  +P   SY G+FP+ P S    T     G+L  V +KK
Sbjct: 22  YHFLSPSPRSYGGAFPIEPQSETTGTLLSDAGELTQVSVKK 62