BP914184
Clone id YMU001_000056_A06
Library
Length 602
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_A06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TAGAGGAGAAACAAAGGAGAGAACACAGAGATATGACTAGTCAAGTGCTACCACTACTTG
AAAACCGTATTAACAATCTAGCAGTGTTTCATGATCTGCTGCATAGATCATCTATTATCT
TGTTCAAGACAGAGATAGAGCTTATTATTACAATATATCCAAAATGACAAAGAGCGAAAT
AGAGAAAGAGGGATGGAACAAGATGTGTATAGCCTGAAGGATTTATTGTTTACCGTACAT
CAAGATTTTTATGAAAGCTGATTTTTAACCTGAAAGATTAATGTGTCAAATATCATGCTG
CTAACGCATGCAAGCAGAGCAAAATGAAGACAAAATGCCTTTTACGACATGAACACATGA
ATCCAAACTTACCTGGTTTATGCTCGAGGAGGCCATGGTTGACAGGTTGATATTTATTGG
TGCCCGGGCTCGCCAAGTGAGAGTTGAAATCGGCTTTGGTGAAGATCATGATCCGGATTT
GAGAAGTATAATTTGTATGTCCGTGTCCGAGAGAAGAGGACGCCGCAGTCCCGTGAGGGC
TATGTCGTTGCCAATAGGGCAAAGTCACACATACGGGAGGTTTGTTCAAGACTCCTAAAG
CA
■■Homology search results ■■ -
sp_hit_id Q9B1K6
Definition sp|Q9B1K6|YCF2_LOTJA Protein ycf2 OS=Lotus japonicus
Align length 29
Score (bit) 31.2
E-value 4.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914184|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_A06.
(602 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9B1K6|YCF2_LOTJA Protein ycf2 OS=Lotus japonicus GN=ycf2-A P... 31 4.2
sp|Q09FP8|YCF2_NANDO Protein ycf2 OS=Nandina domestica GN=ycf2-A... 31 5.5
sp|O18400|PITX1_DROME Pituitary homeobox 1 homolog OS=Drosophila... 31 5.5
sp|Q54243|IPNS_STRGR Isopenicillin N synthetase OS=Streptomyces ... 31 5.5
sp|Q9I8K3|PITX3_XENLA Pituitary homeobox 3 OS=Xenopus laevis GN=... 30 7.2
sp|P81062|PITX3_RAT Pituitary homeobox 3 OS=Rattus norvegicus GN... 30 7.2
sp|O35160|PITX3_MOUSE Pituitary homeobox 3 OS=Mus musculus GN=Pi... 30 7.2
sp|O75364|PITX3_HUMAN Pituitary homeobox 3 OS=Homo sapiens GN=PI... 30 7.2
sp|Q9W751|PITX1_XENLA Pituitary homeobox 1 OS=Xenopus laevis GN=... 30 7.2
sp|Q8JG69|AA2DB_DANRE Alpha-2Db adrenergic receptor OS=Danio rer... 30 7.2

>sp|Q9B1K6|YCF2_LOTJA Protein ycf2 OS=Lotus japonicus GN=ycf2-A PE=3
SV=1
Length = 2298

Score = 31.2 bits (69), Expect = 4.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3

Query: 30 DMTSQVLPLLENRINNLAVFHDLLHRSSI 116
D S +LP+L + +++FHD++HRS I
Sbjct: 1258 DTFSDLLPILSSSQKFVSIFHDIMHRSDI 1286


>sp|Q09FP8|YCF2_NANDO Protein ycf2 OS=Nandina domestica GN=ycf2-A PE=3
SV=1
Length = 2299

Score = 30.8 bits (68), Expect = 5.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3

Query: 30 DMTSQVLPLLENRINNLAVFHDLLHRSSI 116
D S +LP+L + N +++FHD++H S I
Sbjct: 1254 DTFSDLLPILSSSQNFVSIFHDIMHGSDI 1282


>sp|O18400|PITX1_DROME Pituitary homeobox 1 homolog OS=Drosophila
melanogaster GN=Ptx1 PE=2 SV=2
Length = 509

Score = 30.8 bits (68), Expect = 5.5
Identities = 20/63 (31%), Positives = 34/63 (53%)
Frame = +3

Query: 6 EKQRREHRDMTSQVLPLLENRINNLAVFHDLLHRSSIILFKTEIELIITIYPK*QRAK*R 185
++QRR+ TSQ L LE+ + + D+ R I ++ E + ++ K +RAK R
Sbjct: 262 KRQRRQRTHFTSQQLQELEHTFSRNR-YPDMSTREEIAMWTNLTEARVRVWFKNRRAKWR 320

Query: 186 KRD 194
KR+
Sbjct: 321 KRE 323


>sp|Q54243|IPNS_STRGR Isopenicillin N synthetase OS=Streptomyces
griseus GN=pcbC PE=3 SV=1
Length = 329

Score = 30.8 bits (68), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1

Query: 481 EKYNLYVRVREKRTPQSREGYVVANRAKSHIREVC 585
EKY+L + K P++R GY +A + K + C
Sbjct: 70 EKYDLAINAYNKNNPRTRNGYYMAVKGKKAVESWC 104


>sp|Q9I8K3|PITX3_XENLA Pituitary homeobox 3 OS=Xenopus laevis
GN=pitx3 PE=2 SV=1
Length = 292

Score = 30.4 bits (67), Expect = 7.2
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3

Query: 3 EEKQRREHRDMTSQVLPLLENRINNLAVFHDLLHRSSIILFKTEIELIITIYPK*QRAK* 182
++KQRR+ TSQ L LE + D+ R I ++ E + ++ K +RAK
Sbjct: 57 KKKQRRQRTHFTSQQLQELEATFQRNR-YPDMSTREEIAVWTNLTEARVRVWFKNRRAKW 115

Query: 183 RKRD 194
RKR+
Sbjct: 116 RKRE 119


>sp|P81062|PITX3_RAT Pituitary homeobox 3 OS=Rattus norvegicus
GN=Pitx3 PE=2 SV=2
Length = 302

Score = 30.4 bits (67), Expect = 7.2
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3

Query: 3 EEKQRREHRDMTSQVLPLLENRINNLAVFHDLLHRSSIILFKTEIELIITIYPK*QRAK* 182
++KQRR+ TSQ L LE + D+ R I ++ E + ++ K +RAK
Sbjct: 59 KKKQRRQRTHFTSQQLQELEATFQRNR-YPDMSTREEIAVWTNLTEARVRVWFKNRRAKW 117

Query: 183 RKRD 194
RKR+
Sbjct: 118 RKRE 121


>sp|O35160|PITX3_MOUSE Pituitary homeobox 3 OS=Mus musculus GN=Pitx3
PE=2 SV=1
Length = 302

Score = 30.4 bits (67), Expect = 7.2
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3

Query: 3 EEKQRREHRDMTSQVLPLLENRINNLAVFHDLLHRSSIILFKTEIELIITIYPK*QRAK* 182
++KQRR+ TSQ L LE + D+ R I ++ E + ++ K +RAK
Sbjct: 59 KKKQRRQRTHFTSQQLQELEATFQRNR-YPDMSTREEIAVWTNLTEARVRVWFKNRRAKW 117

Query: 183 RKRD 194
RKR+
Sbjct: 118 RKRE 121


>sp|O75364|PITX3_HUMAN Pituitary homeobox 3 OS=Homo sapiens GN=PITX3
PE=1 SV=1
Length = 302

Score = 30.4 bits (67), Expect = 7.2
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3

Query: 3 EEKQRREHRDMTSQVLPLLENRINNLAVFHDLLHRSSIILFKTEIELIITIYPK*QRAK* 182
++KQRR+ TSQ L LE + D+ R I ++ E + ++ K +RAK
Sbjct: 59 KKKQRRQRTHFTSQQLQELEATFQRNR-YPDMSTREEIAVWTNLTEARVRVWFKNRRAKW 117

Query: 183 RKRD 194
RKR+
Sbjct: 118 RKRE 121


>sp|Q9W751|PITX1_XENLA Pituitary homeobox 1 OS=Xenopus laevis
GN=pitx1 PE=2 SV=1
Length = 305

Score = 30.4 bits (67), Expect = 7.2
Identities = 21/64 (32%), Positives = 33/64 (51%)
Frame = +3

Query: 3 EEKQRREHRDMTSQVLPLLENRINNLAVFHDLLHRSSIILFKTEIELIITIYPK*QRAK* 182
++KQRR+ TSQ L LE + D+ R I ++ E + ++ K +RAK
Sbjct: 75 KKKQRRQRTHFTSQQLQELEATFQRNR-YPDMSMREEIAVWTNLTEARVRVWFKNRRAKW 133

Query: 183 RKRD 194
RKR+
Sbjct: 134 RKRE 137


>sp|Q8JG69|AA2DB_DANRE Alpha-2Db adrenergic receptor OS=Danio rerio
GN=adra2db PE=2 SV=1
Length = 415

Score = 30.4 bits (67), Expect = 7.2
Identities = 19/43 (44%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
Frame = -1

Query: 203 SCSIPLSLFRSLSFWI-YCNNK----LYLCLEQDNR*SMQQIM 90
SC+IP SLF +L FWI YCN+ +Y +D R + ++IM
Sbjct: 367 SCTIPDSLF-NLFFWIGYCNSSVNPIIYTIFNRDFRKAFKKIM 408


tr_hit_id A9I6K8
Definition tr|A9I6K8|A9I6K8_BORPD Putative uncharacterized protein OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448)
Align length 47
Score (bit) 33.9
E-value 7.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914184|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_A06.
(602 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9I6K8|A9I6K8_BORPD Putative uncharacterized protein OS=Borde... 34 7.5
tr|Q4S575|Q4S575_TETNG Chromosome 6 SCAF14737, whole genome shot... 33 9.8

>tr|A9I6K8|A9I6K8_BORPD Putative uncharacterized protein
OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 /
CCUG 43448) GN=Bpet3970 PE=4 SV=1
Length = 548

Score = 33.9 bits (76), Expect = 7.5
Identities = 18/47 (38%), Positives = 25/47 (53%)
Frame = -1

Query: 512 SRTRTYKLYFSNPDHDLHQSRFQLSLGEPGHQ*ISTCQPWPPRA*TR 372
SR R + LYF PD +L ++R L L + G + T + P A TR
Sbjct: 28 SRIRLHALYFDTPDRELARARIALRLRQEGRDWVQTLKMPGPDAITR 74


>tr|Q4S575|Q4S575_TETNG Chromosome 6 SCAF14737, whole genome shotgun
sequence OS=Tetraodon nigroviridis GN=GSTENG00023861001
PE=4 SV=1
Length = 492

Score = 33.5 bits (75), Expect = 9.8
Identities = 15/31 (48%), Positives = 20/31 (64%)
Frame = +2

Query: 467 HDPDLRSIICMSVSERRGRRSPVRAMSLPIG 559
HD R +C++ SERR R SP+RA L +G
Sbjct: 236 HDDYSRRALCLTSSERRQRPSPIRARVLSVG 266