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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914188
Clone id YMU001_000056_A10
Library
Length 537
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_A10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AAAGTGAGGAACAAGGATGAGAGAGTACGCCTGAAAGTGGTTGTGGACAGCTGTGTCAAG
AGATGGTTCGAGGAATATTTACTTGCCGCTGAACAAGGTGATCGTGAGATGCAGTCCCTT
GTAGGCGCAATGTACAACACAGGCTATGGAGTAACAAGGGATCCTATAAAGGGTAAGTTT
TGGCTCGACAGAGCTCGAAGCGGACACTGAAATCATAAAGATCGAAAACAATAAGAGCAG
CCGCCTGAGCATTCTGCAATTATTGTGGGAGATGAAATATTATGTAAGCTCTCGTTTTTT
CGGAGAGTCCGTTGTCACTTTTTGTAGTGGGAAGTTCAAACAGCAACTTTGAAGGCTTCA
GGTAGGGAATGTGGGAGAAGCTTTGGAGAATATACTGATTTTTCCAAAAAGCAGGAACCC
ACATTACTGCAACTATGCTGATTCTATTTCTATCAAGTGTCATGTATGCTACAAATATAA
GTTCCATTTCAAATTTATACCGGACTGACAGACAAGTTTGTGGTGCAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P77234
Definition sp|P77234|YBEQ_ECOLI Uncharacterized protein ybeQ OS=Escherichia coli (strain K12)
Align length 45
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914188|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_A10.
         (526 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P77234|YBEQ_ECOLI Uncharacterized protein ybeQ OS=Escherichia...    32   1.4  
sp|Q9JZ25|Y1327_NEIMB Uncharacterized protein NMB1327 OS=Neisser...    32   1.4  
sp|P44277|Y1625_HAEIN Uncharacterized protein HI1625 OS=Haemophi...    31   3.2  
sp|P18747|ZO28_XENLA Oocyte zinc finger protein XlCOF28 (Fragmen...    31   4.1  
sp|P77296|YBET_ECOLI Uncharacterized protein ybeT OS=Escherichia...    31   4.1  

>sp|P77234|YBEQ_ECOLI Uncharacterized protein ybeQ OS=Escherichia
           coli (strain K12) GN=ybeQ PE=4 SV=2
          Length = 325

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 76  YLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRAR-SGH 207
           Y +AAE G    Q+ +G MY  G GV +D     FW  +A   GH
Sbjct: 123 YQIAAESGMSYAQNNLGWMYRNGNGVAKDYALAFFWYKQAALQGH 167



 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 76  YLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           YL +A+QG+R  Q  +   YN G GV +D  +  +W  +A
Sbjct: 195 YLKSAQQGNRHAQFQIAWDYNAGEGVDQDYKQAMYWYLKA 234



 Score = 29.6 bits (65), Expect = 9.2
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
 Frame = +1

Query: 52  CVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGV-TRDPIKGKFWLD-RARSGH 207
           C     +E +  AE+GD E Q +VG  YN    + + D  K  +WL   A  GH
Sbjct: 8   CDNLSIDEIIERAEKGDCEAQYIVGFYYNRDSAIDSPDDEKAFYWLKLAAEQGH 61


>sp|Q9JZ25|Y1327_NEIMB Uncharacterized protein NMB1327 OS=Neisseria
           meningitidis serogroup B GN=NMB1327 PE=1 SV=1
          Length = 467

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +1

Query: 76  YLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           Y  AAE G  + Q+ +G+MY  G G+T D  + + W ++A
Sbjct: 370 YTEAAELGHSKAQTNLGSMYYFGQGMTADYNEARKWFEKA 409


>sp|P44277|Y1625_HAEIN Uncharacterized protein HI1625 OS=Haemophilus
           influenzae GN=HI1625 PE=4 SV=1
          Length = 165

 Score = 31.2 bits (69), Expect = 3.2
 Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
 Frame = +1

Query: 16  DERVRLKVVVDSCVKR-WFEEYLLA---AEQGDREMQSLVGAMYNTGYGVTRDPIKGKFW 183
           D++ R+ +  +   K+ W + + +    A +G+   QS +G +YN G G  RD  K  +W
Sbjct: 33  DDQARMNLAQEFANKQQWIDVFNIMYPMALEGNITAQSNLGMLYNLGRGTVRDYEKAYWW 92

Query: 184 LDRA 195
              A
Sbjct: 93  FSEA 96


>sp|P18747|ZO28_XENLA Oocyte zinc finger protein XlCOF28 (Fragment)
           OS=Xenopus laevis PE=3 SV=1
          Length = 439

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 19/64 (29%), Positives = 28/64 (43%)
 Frame = -3

Query: 440 QHSCSNVGSCFLEKSVYSPKLLPHSLPEAFKVAV*TSHYKK*QRTLRKNESLHNISSPTI 261
           QH C+    CFLEKS        H+    FK +V    + +    L ++  +H+   P  
Sbjct: 332 QHKCTECDKCFLEKSKLVVHQRTHTGERPFKCSVCDKTFIR-MVHLLEHRKIHDGDRPYT 390

Query: 260 IAEC 249
            AEC
Sbjct: 391 CAEC 394


>sp|P77296|YBET_ECOLI Uncharacterized protein ybeT OS=Escherichia
           coli (strain K12) GN=ybeT PE=4 SV=1
          Length = 184

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +1

Query: 64  WFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRARSGH*NHKDR 225
           W++E   AAEQG    Q  +G +Y  G G+  +  + + WL      H  + +R
Sbjct: 126 WYKE---AAEQGYAHAQYTLGLIYRNGSGINVNHYESQKWLKLTAKQHYKNAER 176
tr_hit_id A7QFH8
Definition tr|A7QFH8|A7QFH8_VITVI Chromosome chr8 scaffold_88, whole genome shotgun sequence OS=Vitis vinifera
Align length 58
Score (bit) 69.3
E-value 1.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914188|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_A10.
         (526 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7QFH8|A7QFH8_VITVI Chromosome chr8 scaffold_88, whole genome...    69   1e-10
tr|A7Q3R7|A7Q3R7_VITVI Chromosome chr13 scaffold_48, whole genom...    67   7e-10
tr|Q9FLB8|Q9FLB8_ARATH Genomic DNA, chromosome 5, TAC clone:K18I...    65   2e-09
tr|Q84W16|Q84W16_ARATH Putative uncharacterized protein At5g0536...    65   2e-09
tr|Q3E9L2|Q3E9L2_ARATH Uncharacterized protein At5g05360.2 (At5g...    65   2e-09
tr|B6TNI0|B6TNI0_MAIZE Putative uncharacterized protein OS=Zea m...    65   2e-09
tr|A8IVI2|A8IVI2_CHLRE Predicted protein OS=Chlamydomonas reinha...    65   3e-09
tr|A9P1L8|A9P1L8_PICSI Putative uncharacterized protein OS=Picea...    63   8e-09
tr|Q10MR3|Q10MR3_ORYSJ Os03g0298600 protein OS=Oryza sativa subs...    63   1e-08
tr|A3AH17|A3AH17_ORYSJ Putative uncharacterized protein OS=Oryza...    63   1e-08
tr|Q5W6N1|Q5W6N1_ORYSJ Os05g0342900 protein OS=Oryza sativa subs...    62   1e-08
tr|A2Y3E1|A2Y3E1_ORYSI Putative uncharacterized protein OS=Oryza...    62   1e-08
tr|O80906|O80906_ARATH Expressed protein (At2g38450) OS=Arabidop...    59   1e-07
tr|B6SI80|B6SI80_MAIZE Putative uncharacterized protein OS=Zea m...    58   3e-07
tr|Q8LEQ5|Q8LEQ5_ARATH Putative uncharacterized protein OS=Arabi...    57   6e-07
tr|B6T1M8|B6T1M8_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|B6TG32|B6TG32_MAIZE Putative uncharacterized protein OS=Zea m...    55   2e-06
tr|A9W448|A9W448_METEP Sel1 domain protein repeat-containing pro...    47   6e-04
tr|B7KXK4|B7KXK4_METCH Sel1 domain protein repeat-containing pro...    47   6e-04
tr|A9THX4|A9THX4_PHYPA Predicted protein OS=Physcomitrella paten...    47   6e-04
tr|B1ZJH0|B1ZJH0_METPB Sel1 domain protein repeat-containing pro...    45   0.002
tr|B3ETJ2|B3ETJ2_AMOA5 Putative uncharacterized protein OS=Amoeb...    45   0.003
tr|B6JC81|B6JC81_OLICO Sel1 repeat family OS=Oligotropha carboxi...    44   0.007
tr|B3T6N4|B3T6N4_9ZZZZ Putative MORN repeat protein OS=unculture...    42   0.015
tr|A8HRA6|A8HRA6_AZOC5 Sel1-like repeat protein OS=Azorhizobium ...    42   0.015
tr|Q1Q8J6|Q1Q8J6_PSYCK Sel1 OS=Psychrobacter cryohalolentis (str...    42   0.019
tr|B8ILP5|B8ILP5_METNO Sel1 domain protein repeat-containing pro...    42   0.019
tr|A6CEG0|A6CEG0_9PLAN Putative uncharacterized protein OS=Planc...    42   0.019
tr|A4NMU8|A4NMU8_HAEIN Putative uncharacterized protein OS=Haemo...    42   0.019
tr|Q212Y0|Q212Y0_RHOPB Sel1-like OS=Rhodopseudomonas palustris (...    42   0.025

>tr|A7QFH8|A7QFH8_VITVI Chromosome chr8 scaffold_88, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00037427001
           PE=4 SV=1
          Length = 100

 Score = 69.3 bits (168), Expect = 1e-10
 Identities = 33/58 (56%), Positives = 39/58 (67%)
 Frame = +1

Query: 22  RVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           RV L  VV  CVKRWF++ L  A+ GD  MQ LVG MY +GYGV RD  KG+ W+ RA
Sbjct: 12  RVPLSEVVSDCVKRWFQDTLREAKSGDVSMQVLVGQMYYSGYGVPRDAQKGRVWMTRA 69


>tr|A7Q3R7|A7Q3R7_VITVI Chromosome chr13 scaffold_48, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00029389001
           PE=4 SV=1
          Length = 156

 Score = 66.6 bits (161), Expect = 7e-10
 Identities = 31/58 (53%), Positives = 39/58 (67%)
 Frame = +1

Query: 22  RVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           R+ L  VV  C KRWF++ L  A+ GD  MQ LVG MY +GYGV+RD  KG+ W+ RA
Sbjct: 67  RMPLAQVVSDCAKRWFQDTLKEAKAGDTTMQVLVGQMYFSGYGVSRDAQKGRAWISRA 124


>tr|Q9FLB8|Q9FLB8_ARATH Genomic DNA, chromosome 5, TAC clone:K18I23
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 179

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = +1

Query: 22  RVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           RV L  VV+ CV+RWF++ L  A+ GD  MQ LVG MY +GYG+ +D  KG+ W+++A
Sbjct: 77  RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKA 134


>tr|Q84W16|Q84W16_ARATH Putative uncharacterized protein At5g05360
           (Fragment) OS=Arabidopsis thaliana GN=At5g05360 PE=2
           SV=1
          Length = 157

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = +1

Query: 22  RVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           RV L  VV+ CV+RWF++ L  A+ GD  MQ LVG MY +GYG+ +D  KG+ W+++A
Sbjct: 71  RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKA 128


>tr|Q3E9L2|Q3E9L2_ARATH Uncharacterized protein At5g05360.2
           (At5g05360) OS=Arabidopsis thaliana GN=At5g05360 PE=2
           SV=1
          Length = 153

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/58 (50%), Positives = 41/58 (70%)
 Frame = +1

Query: 22  RVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           RV L  VV+ CV+RWF++ L  A+ GD  MQ LVG MY +GYG+ +D  KG+ W+++A
Sbjct: 77  RVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGRAWINKA 134


>tr|B6TNI0|B6TNI0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 170

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 29/60 (48%), Positives = 39/60 (65%)
 Frame = +1

Query: 16  DERVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRA 195
           DERV L  VV  C +RWF++ L  A  GD  MQ LVG MY +GYGV ++  K + W+++A
Sbjct: 77  DERVPLAEVVSDCTRRWFQDALKEARAGDITMQVLVGQMYRSGYGVNKNEHKARVWMEKA 136


>tr|A8IVI2|A8IVI2_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CGL10 PE=4 SV=1
          Length = 136

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 31/61 (50%), Positives = 39/61 (63%)
 Frame = +1

Query: 19  ERVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDRAR 198
           E + LK VV   VKRWFE+ LL A++GD + Q+LVG MY  GYG  +D    K W D+A 
Sbjct: 64  EPIPLKYVVQEAVKRWFEDTLLEAQRGDVKQQALVGEMYKEGYGCQKDARAAKEWSDKAA 123

Query: 199 S 201
           S
Sbjct: 124 S 124


>tr|A9P1L8|A9P1L8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 144

 Score = 63.2 bits (152), Expect = 8e-09
 Identities = 30/61 (49%), Positives = 39/61 (63%)
 Frame = +1

Query: 13  KDERVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDR 192
           +  R+ LK VV  C +RWF++ L  A+ GD  MQ LVG MY +GYGV RD  +GK W  +
Sbjct: 52  EQNRLPLKEVVADCARRWFQDSLKEAKAGDTGMQVLVGQMYCSGYGVHRDIQRGKAWFQK 111

Query: 193 A 195
           A
Sbjct: 112 A 112


>tr|Q10MR3|Q10MR3_ORYSJ Os03g0298600 protein OS=Oryza sativa subsp.
           japonica GN=Os03g0298600 PE=2 SV=1
          Length = 170

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 28/61 (45%), Positives = 39/61 (63%)
 Frame = +1

Query: 13  KDERVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDR 192
           +D+RV L  VV  C +RWF++ L  A  GD  MQ LVG MY +GYGV ++  K + W ++
Sbjct: 71  EDDRVPLSEVVLDCTRRWFQDTLKEARAGDAAMQVLVGQMYRSGYGVNKNEHKAQIWTEK 130

Query: 193 A 195
           A
Sbjct: 131 A 131


>tr|A3AH17|A3AH17_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010089 PE=4 SV=1
          Length = 181

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 28/61 (45%), Positives = 39/61 (63%)
 Frame = +1

Query: 13  KDERVRLKVVVDSCVKRWFEEYLLAAEQGDREMQSLVGAMYNTGYGVTRDPIKGKFWLDR 192
           +D+RV L  VV  C +RWF++ L  A  GD  MQ LVG MY +GYGV ++  K + W ++
Sbjct: 71  EDDRVPLSEVVLDCTRRWFQDTLKEARAGDAAMQVLVGQMYRSGYGVNKNEHKAQIWTEK 130

Query: 193 A 195
           A
Sbjct: 131 A 131