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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914192
Clone id YMU001_000056_B02
Library
Length 350
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGGTACTCCCAACATCGGGTAAGCCTTGAACCAACTGTTCTCGAAAAGAAAGTCGAGGG
GCATCATTGTTCAAATGGCCAAACCTATAATTCCATAAATCACCTGTGGGTATCCAAGTT
GAGGAAGAAAGAGCGTGGAGTCGATAGAGGCCATTCTCTACTGAGCCCCTCTAACTTCTA
CATTGGTCTATCAATCCCGTATAGATACTAAGTCCTTCGTGAAGATCACCTCCATGCCAA
TCTTCCACACCTCGTGTACTGACATAAGATGGAAACCTAGTTTTGGAGCATAAAGTACCT
TGGAGGTATGCATACCTCCTCTTCCGTCAGGAATGAGCTCCATGGAGCCC
■■Homology search results ■■ -
sp_hit_id Q38UM4
Definition sp|Q38UM4|SYS_LACSS Seryl-tRNA synthetase OS=Lactobacillus sakei subsp. sakei (strain 23K)
Align length 52
Score (bit) 32.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914192|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_B02.
         (350 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q38UM4|SYS_LACSS Seryl-tRNA synthetase OS=Lactobacillus sakei...    32   0.97 
sp|Q3SGA3|GPMI_THIDA 2,3-bisphosphoglycerate-independent phospho...    30   3.7  

>sp|Q38UM4|SYS_LACSS Seryl-tRNA synthetase OS=Lactobacillus sakei
           subsp. sakei (strain 23K) GN=serS PE=3 SV=1
          Length = 424

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 21/52 (40%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
 Frame = +1

Query: 46  KESRGASLFKWPNL*FHKSPVGIQVE---EERAWSR*RPFSTEPL*LLHWSI 192
           KE     L + PN     +PVG+      EER WS  R F  EP  L HW I
Sbjct: 94  KEKVDYILVRLPNFPDDSAPVGLDESFSREERKWSTPREFDFEP--LAHWDI 143


>sp|Q3SGA3|GPMI_THIDA 2,3-bisphosphoglycerate-independent
           phosphoglycerate mutase OS=Thiobacillus denitrificans
           (strain ATCC 25259) GN=gpmI PE=3 SV=1
          Length = 513

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = -1

Query: 140 LHALSSSTWIPTGDLWNYRFGHLNNDAPRLSFRE 39
           +HA  S   +P G + N   GHLN  A R+ ++E
Sbjct: 45  IHASESEVGLPKGQMGNSEVGHLNIGAGRVVYQE 78
tr_hit_id Q6XMP8
Definition tr|Q6XMP8|Q6XMP8_AEDAL AgCP7521-like protein (Fragment) OS=Aedes albopictus
Align length 39
Score (bit) 33.5
E-value 0.026
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914192|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_B02.
         (350 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6XMP8|Q6XMP8_AEDAL AgCP7521-like protein (Fragment) OS=Aedes...    33   0.026
tr|Q2QPC0|Q2QPC0_ORYSJ Retrotransposon protein, putative, Ty1-co...    35   0.032
tr|Q0IQP3|Q0IQP3_ORYSJ Os12g0108800 protein OS=Oryza sativa subs...    35   0.042
tr|Q2QYR6|Q2QYR6_ORYSJ Retrotransposon protein, putative, Ty1-co...    35   0.042
tr|Q0J3I8|Q0J3I8_ORYSJ Os09g0107600 protein OS=Oryza sativa subs...    33   0.053
tr|Q7XKY1|Q7XKY1_ORYSJ OSJNBa0022F16.23 protein OS=Oryza sativa ...    34   0.053
tr|Q5TKD7|Q5TKD7_ORYSJ Putative uncharacterized protein OSJNBa00...    34   0.19 
tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical O...    31   0.19 
tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=A...    28   0.32 
tr|Q0JAR5|Q0JAR5_ORYSJ Os04g0582400 protein OS=Oryza sativa subs...    33   0.32 
tr|Q7XUD9|Q7XUD9_ORYSJ OSJNBa0088A01.6 protein OS=Oryza sativa s...    33   0.32 
tr|Q9SXB2|Q9SXB2_ARATH T28P6.8 protein OS=Arabidopsis thaliana G...    33   0.32 
tr|Q9M2D1|Q9M2D1_ARATH Copia-type polyprotein OS=Arabidopsis tha...    33   0.32 
tr|Q9C739|Q9C739_ARATH Copia-type polyprotein, putative OS=Arabi...    33   0.32 
tr|Q9C536|Q9C536_ARATH Copia-type polyprotein, putative OS=Arabi...    33   0.32 
tr|Q9SFE1|Q9SFE1_ARATH T26F17.17 OS=Arabidopsis thaliana PE=4 SV=1     33   0.32 
tr|Q9M197|Q9M197_ARATH Copia-type reverse transcriptase-like pro...    33   0.32 
tr|Q8H897|Q8H897_ORYSJ Putative retroelement (Retrotransposon pr...    37   0.37 
tr|B8LKX7|B8LKX7_PICSI Putative uncharacterized protein OS=Picea...    37   0.49 
tr|Q0J4X3|Q0J4X3_ORYSJ Os08g0484000 protein OS=Oryza sativa subs...    30   0.70 
tr|Q75IL9|Q75IL9_ORYSJ Pupative polyprotein OS=Oryza sativa subs...    36   0.83 
tr|A5ALT7|A5ALT7_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|A6YTD9|A6YTD9_CUCME Integrase OS=Cucumis melo PE=4 SV=1             29   1.1  
tr|Q75M81|Q75M81_ORYSJ Putative integrase (Retrotransposon prote...    35   1.9  
tr|A5AYW0|A5AYW0_VITVI Putative uncharacterized protein OS=Vitis...    35   1.9  
tr|A8NHF9|A8NHF9_COPC7 Putative uncharacterized protein OS=Copri...    35   1.9  
tr|Q9SY68|Q9SY68_ARATH F14N23.14 OS=Arabidopsis thaliana PE=4 SV=1     33   2.2  
tr|Q4ABY7|Q4ABY7_BRACM 117M18_33 (Fragment) OS=Brassica campestr...    35   2.4  
tr|A5ADA3|A5ADA3_VITVI Putative uncharacterized protein OS=Vitis...    27   2.5  
tr|Q0DC67|Q0DC67_ORYSJ Os06g0477500 protein OS=Oryza sativa subs...    30   3.1  

>tr|Q6XMP8|Q6XMP8_AEDAL AgCP7521-like protein (Fragment) OS=Aedes
           albopictus PE=4 SV=1
          Length = 602

 Score = 33.5 bits (75), Expect(2) = 0.026
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -2

Query: 313 MHTSKVLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIR 197
           +    VLY P L  +LMSV ++ K G+EV+F   L +++
Sbjct: 323 LQVKDVLYVPSLRDNLMSVKKLAKAGIEVVFNSKLATLK 361



 Score = 26.9 bits (58), Expect(2) = 0.026
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 101 DLWNYRFGHLNNDAPRLSFREQLVQGL 21
           +LW+ R GHL  +  +   RE L +GL
Sbjct: 397 NLWHRRLGHLCENGMKTMVREDLAKGL 423


>tr|Q2QPC0|Q2QPC0_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g35000 PE=4 SV=2
          Length = 1269

 Score = 34.7 bits (78), Expect(2) = 0.032
 Identities = 15/29 (51%), Positives = 20/29 (68%)
 Frame = -1

Query: 98  LWNYRFGHLNNDAPRLSFREQLVQGLPDV 12
           LW+ RFGHL  DA R   R+ +V+GLP +
Sbjct: 394 LWHARFGHLYFDALRRLARQDMVRGLPQI 422



 Score = 25.4 bits (54), Expect(2) = 0.032
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 349 GSMELIPDGRGGMHTSK--VLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           G  ++I + R G H +   V Y PKL  +L+S+ ++ + G  V     + +IRD
Sbjct: 302 GQGKIIFECRNGEHRALTGVYYIPKLNANLVSLGQLDENGCNVRIFHGVCTIRD 355


>tr|Q0IQP3|Q0IQP3_ORYSJ Os12g0108800 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0108800 PE=4 SV=1
          Length = 1368

 Score = 35.0 bits (79), Expect(2) = 0.042
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -1

Query: 95  WNYRFGHLNNDAPRLSFREQLVQGLPDVGST 3
           W+ RFGHLN  A R   RE +V+GLP++  T
Sbjct: 494 WHDRFGHLNFPALRKMAREGMVRGLPELEQT 524



 Score = 24.6 bits (52), Expect(2) = 0.042
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 349 GSMELIPDGRGGMHT--SKVLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           G   +I D + G H   + V + PKL  +++SV ++ +IG E +     + +RD
Sbjct: 401 GRGTVIFDCKNGEHRFFTDVYFIPKLQTNIISVGQLDEIGGEALVHGGFLRMRD 454


>tr|Q2QYR6|Q2QYR6_ORYSJ Retrotransposon protein, putative, Ty1-copia
           subclass OS=Oryza sativa subsp. japonica
           GN=LOC_Os12g01790 PE=4 SV=2
          Length = 1328

 Score = 35.0 bits (79), Expect(2) = 0.042
 Identities = 16/31 (51%), Positives = 21/31 (67%)
 Frame = -1

Query: 95  WNYRFGHLNNDAPRLSFREQLVQGLPDVGST 3
           W+ RFGHLN  A R   RE +V+GLP++  T
Sbjct: 494 WHDRFGHLNFPALRKMAREGMVRGLPELEQT 524



 Score = 24.6 bits (52), Expect(2) = 0.042
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 349 GSMELIPDGRGGMHT--SKVLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           G   +I D + G H   + V + PKL  +++SV ++ +IG E +     + +RD
Sbjct: 401 GRGTVIFDCKNGEHRFFTDVYFIPKLQTNIISVGQLDEIGGEALVHGGFLRMRD 454


>tr|Q0J3I8|Q0J3I8_ORYSJ Os09g0107600 protein OS=Oryza sativa subsp.
           japonica GN=Os09g0107600 PE=4 SV=1
          Length = 1698

 Score = 33.5 bits (75), Expect(2) = 0.053
 Identities = 14/29 (48%), Positives = 20/29 (68%)
 Frame = -1

Query: 98  LWNYRFGHLNNDAPRLSFREQLVQGLPDV 12
           LW+  FGHL+ DA R   R+ +V+GLP +
Sbjct: 485 LWHAHFGHLHFDALRQLARQDMVRGLPPI 513



 Score = 25.8 bits (55), Expect(2) = 0.053
 Identities = 16/54 (29%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
 Frame = -2

Query: 349 GSMELIPDGRGGMHTSK--VLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           G  ++I + R G H +   V Y PK+  +L+S+ ++ + G +V     + +IRD
Sbjct: 393 GQGKIIFECRNGEHRALTGVYYIPKVNANLISLGQLDENGCDVCIFHGVCTIRD 446


>tr|Q7XKY1|Q7XKY1_ORYSJ OSJNBa0022F16.23 protein OS=Oryza sativa
           subsp. japonica GN=OSJNBa0022F16.23 PE=4 SV=1
          Length = 1628

 Score = 34.3 bits (77), Expect(2) = 0.053
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -1

Query: 98  LWNYRFGHLNNDAPRLSFREQLVQGLPDV 12
           LW+ RFGHL+ DA R   ++ +V+GLP +
Sbjct: 472 LWHARFGHLHFDALRRLTQQDMVRGLPQI 500



 Score = 25.0 bits (53), Expect(2) = 0.053
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = -2

Query: 349 GSMELIPDGRGGMHTSK--VLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           G  ++I + R   H +   V Y PKL  +L+S+ ++ + G ++     + +IRD
Sbjct: 380 GQGKIIFECRNSEHRALIGVYYIPKLNANLVSLRQLDENGCDICIFHGVCTIRD 433


>tr|Q5TKD7|Q5TKD7_ORYSJ Putative uncharacterized protein
           OSJNBa0017O06.12 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0017O06.12 PE=4 SV=1
          Length = 1332

 Score = 34.3 bits (77), Expect(2) = 0.19
 Identities = 14/29 (48%), Positives = 21/29 (72%)
 Frame = -1

Query: 98  LWNYRFGHLNNDAPRLSFREQLVQGLPDV 12
           LW+ R+GHLN D+ R   +  +V+GLPD+
Sbjct: 478 LWHARYGHLNFDSLRRLAQGAMVRGLPDI 506



 Score = 23.1 bits (48), Expect(2) = 0.19
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -2

Query: 304 SKVLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           S V Y PKL  +L+S+ ++ + G  +     +++IRD
Sbjct: 403 SGVYYIPKLKSNLISLGQLDENGCAIHIDDGVMTIRD 439


>tr|Q6L3N8|Q6L3N8_SOLDE Putative gag-pol polyprotein, identical
           OS=Solanum demissum GN=SDM1_42t00010 PE=4 SV=1
          Length = 1333

 Score = 31.2 bits (69), Expect(2) = 0.19
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = -1

Query: 101 DLWNYRFGHLNNDAPRLSFREQLVQGLPDV 12
           +LW+ R+GHLN +  +L  ++ +V GLP++
Sbjct: 443 NLWHLRYGHLNVNWLKLLVQKDMVIGLPNI 472



 Score = 26.2 bits (56), Expect(2) = 0.19
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 298 VLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           V Y P L  +L+SV ++   G  V+F  +   I+D
Sbjct: 370 VQYVPTLAHNLLSVGQLMTSGYSVVFYDNACDIKD 404


>tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1499

 Score = 28.5 bits (62), Expect(2) = 0.32
 Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 9/58 (15%)
 Frame = -2

Query: 340 ELIPDGRGGMHTSK---------VLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           +++ +G+G +  S          VLY P+L  +L+SV ++   G  VIF  +   I+D
Sbjct: 359 KVVSEGKGDIRVSTNKGDHVIKDVLYVPELARNLLSVSQMISNGYRVIFEDNKCVIQD 416



 Score = 28.1 bits (61), Expect(2) = 0.32
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -1

Query: 101 DLWNYRFGHLNNDAPRLSFREQLVQGLP 18
           DLW+ RFGH+N D        ++V+ LP
Sbjct: 455 DLWHKRFGHVNYDKIETMQTLKIVEKLP 482


>tr|Q0JAR5|Q0JAR5_ORYSJ Os04g0582400 protein OS=Oryza sativa subsp.
           japonica GN=Os04g0582400 PE=4 SV=1
          Length = 1444

 Score = 33.1 bits (74), Expect(2) = 0.32
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = -1

Query: 98  LWNYRFGHLNNDAPRLSFREQLVQGLPDV 12
           LW+ R+GHL+ DA R      +V+G+PD+
Sbjct: 525 LWHARYGHLHFDALRRLASRDMVRGMPDI 553



 Score = 23.5 bits (49), Expect(2) = 0.32
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = -2

Query: 298 VLYAPKLGFHLMSVHEVWKIGMEVIFTKDLVSIRD 194
           V Y PKL  +L+S+ ++ + G +V     + +IRD
Sbjct: 452 VYYIPKLNANLISLGQLDENGCDVRIYHGVCTIRD 486