BP914195 [AcEST]

BP914195
Clone id	YMU001_000056_B05
Library	YMU01
Length	633
Definition	Adiantum capillus-veneris mRNA. clone: YMU001_000056_B05.
Accession	BP914195
Tissue type	prothallium
Developmental stage	-
Contig ID	CL1198Contig1
Sequence	TTTTTTTTTTTTTTTTTTGTATCAACAAAACTAGCCATTCATAACATTGCTTGAGAAATG TTTAGAGCTGCAAGCACTGCCTCTTGCCATGCATTAGAGTCATCTAGGTAACATCTTGAA GCAACTCATAAAGTTAATATGCCAACAAGCATGTCTAGTAGAAGTGTCTAATATTCAACT AAAAGTTAGCTTCATATGAATAGAACAACTTCCATGGACTTGTCTCTCCATACATGTGGA AGCCACTTCCAAGGCTCCATCAGCAGGGAAATCTTCACATGAGCGCAGCCCACGTTTCTT CCTAGATCAAGCTTCCTTGGTTTGACTTGTATTCACTGCTACACCCCTTGCTTGTTGCAA TGCAATTCAAAAAACTATGCACCACAGCATCTGCTTCGAGGCAGGAAATAAAACACCTCC TTTGCCAGATAATTCCATTATGAATTGTCGTCTGGCAGGTGGCTGCACTTATATCTCATG CCAGCCTAAGAGATACTACATACATAAAGAAGCTCCACAACACATAACATACAGATTAGC GCATGTTCTTGGGGAACCTAAGCTCTACCTACGAAACTGAAACATTGTCTCTCATAGCAA CTATGTCAACAACATTTGCACTATCCTAACCAC
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	O88737
Definition	sp\|O88737\|BSN_MOUSE Protein bassoon OS=Mus musculus
Align length	69
Score (bit)	33.5
E-value	0.89
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP914195\|Adiantum capillus-veneris mRNA, clone: YMU001_000056_B05. (615 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|O88737\|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 ... 33 0.89 sp\|O88778\|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE... 32 2.0 >sp\|O88737\|BSN_MOUSE Protein bassoon OS=Mus musculus GN=Bsn PE=1 SV=3 Length = 3942 Score = 33.5 bits (75), Expect = 0.89 Identities = 20/69 (28%), Positives = 31/69 (44%) Frame = +2 Query: 329 LACCNAIQKTMHHSICFEAGNKTPPLPDNSIMNCRLAGGCTYISCQPKRYYIHKEAPQHI 508 LACC+ + K S C + P PD S+ + L G + P+ E P+ + Sbjct: 1903 LACCDMVYKFPFGSSCTGTFHPAPSAPDKSVTDTALPGQSSGPFYSPR----DPEPPEPL 1958 Query: 509 TYRLAHVLG 535 T+R V+G Sbjct: 1959 TFRTQGVVG 1967 >sp\|O88778\|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE=1 SV=3 Length = 3938 Score = 32.3 bits (72), Expect = 2.0 Identities = 20/69 (28%), Positives = 30/69 (43%) Frame = +2 Query: 329 LACCNAIQKTMHHSICFEAGNKTPPLPDNSIMNCRLAGGCTYISCQPKRYYIHKEAPQHI 508 LACC+ K S C + P PD S+ + L G + P+ E P+ + Sbjct: 1891 LACCDMAYKFPFGSSCTGTFHPAPSAPDKSVTDAALPGQSSGPFYSPR----DPEPPEPL 1946 Query: 509 TYRLAHVLG 535 T+R V+G Sbjct: 1947 TFRAQGVVG 1955
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	-
Definition	No hits.
Align length	-
Score (bit)	-
E-value	-
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BP914195\|Adiantum capillus-veneris mRNA, clone: YMU001_000056_B05. (615 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done *** No hits found ****