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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914200
Clone id YMU001_000056_B12
Library
Length 523
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_B12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AGCTTCGGAAAGGCGGAATATACATGCATACGAGGTGGTTCTGTTGTCATTTGACCCTAG
CCAAGGCGGGGCTTCTTGCCGAAAGGTGTAAATTTGCAGATAGTTAAGAAGAGGTCATGG
AAGCCTTTAATAGCAATCGCTGTGTAAAATGCCCACTGTAAGGATGTGTGTTCTCGAGGG
CAAGGTATAGGCCAGATTTGGCATTGAGTTTTTCAACCAGTTTTGTTTTTTTTTCCCTTT
CAAATTGAGAACTGCGAACCATCTGAGATGGGTTGTCATCGTGTTATGTGGAAACAATTT
TGGCATTAGTTTCCATGATAAGGCTGAGCAGAGTGGGATAGATGGTTTTCTTTCACTCGC
ACAAAAGTGAGTACTTTCAAAACCTGAAATTTGAGGTGGATTATTCACGTTGCTTGTAAA
GGCTTCTTGTTTCATATTGTAATGAGATAAATTTTGTTTCACTTCACTATGTGATCAAGC
AAGGCACTTAAGTATGGCTTCATTGCCAGTATGCTTTTGGTTA
■■Homology search results ■■ -
sp_hit_id P28824
Definition sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis
Align length 43
Score (bit) 32.3
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914200|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_B12.
         (523 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis GN=nrp1 PE=2...    32   1.4  
sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit ...    31   3.1  
sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2           30   5.3  
sp|Q694C5|ABC3G_ERYPA DNA dC->dU-editing enzyme APOBEC-3G OS=Ery...    30   5.3  
sp|Q7YR25|ABC3G_CERAE DNA dC->dU-editing enzyme APOBEC-3G (Fragm...    30   5.3  
sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1           30   7.0  

>sp|P28824|NRP1_XENLA Neuropilin-1 OS=Xenopus laevis GN=nrp1 PE=2
           SV=1
          Length = 928

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -1

Query: 268 SQMVRSSQFEREKKTKLVEKLNAKSGLYLALENTHPYSGHFTQ 140
           SQ+  SSQ +R    +L   + ++SG  L   NTHPY+  + Q
Sbjct: 445 SQITASSQVDRNWVPELARLVTSRSGWALPPSNTHPYTKEWLQ 487


>sp|Q9VKH0|COG8_DROME Conserved oligomeric Golgi complex subunit 8
           OS=Drosophila melanogaster GN=CG6488 PE=1 SV=1
          Length = 570

 Score = 31.2 bits (69), Expect = 3.1
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 7/45 (15%)
 Frame = -2

Query: 378 ESTHFCASERKPSIPLCSALSWKLMPKL-------FPHNTMTTHL 265
           E   F  SER+  + LCS L++ L+P +       FP  ++T HL
Sbjct: 471 EQQAFAGSEREAFVRLCSCLAYDLVPYIQRCIHGVFPPQSLTVHL 515


>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=2
          Length = 34350

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 456   QNLSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLCSALSWKLMPKLFPHNTM 277
             QNL   N+ +E  T +  NP    G E T+F    RKP+    S ++  +  +L   N +
Sbjct: 18933 QNLKVTNVTKENCTISWENPLDNGGSEITNFIVEYRKPNQKGWSIVASDVTKRLIKANLL 18992

Query: 276   TTHLRWFAV 250
               +  +F V
Sbjct: 18993 ANNEYYFRV 19001


>sp|Q694C5|ABC3G_ERYPA DNA dC->dU-editing enzyme APOBEC-3G
           OS=Erythrocebus patas GN=APOBEC3G PE=3 SV=1
          Length = 383

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 471 HSEVKQNLSHYNMKQEAFTSNVNNPPQISGFESTHFC 361
           H+ + + L H  M    FTSN NN P +SG   T+ C
Sbjct: 186 HATLGELLRHV-MDPGTFTSNFNNKPWVSGQRETYLC 221


>sp|Q7YR25|ABC3G_CERAE DNA dC->dU-editing enzyme APOBEC-3G
           (Fragment) OS=Cercopithecus aethiops GN=APOBEC3G PE=1
           SV=1
          Length = 377

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = -2

Query: 471 HSEVKQNLSHYNMKQEAFTSNVNNPPQISGFESTHFC 361
           H+ + + L H  M    FTSN NN P +SG   T+ C
Sbjct: 186 HATLGELLRHV-MDPGTFTSNFNNKPWVSGQRETYLC 221


>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1
          Length = 35213

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = -2

Query: 456   QNLSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLCSALSWKLMPKLFPHNTM 277
             QNL   N+ +E  T +  NP    G E T+F    RKP+    S ++  +  +L   N +
Sbjct: 19795 QNLKVSNVTKENCTISWENPLDNGGSEITNFIVEYRKPNQKGWSIVASDVTKRLVKANLL 19854

Query: 276   TTHLRWFAV 250
               +  +F V
Sbjct: 19855 ANNEYYFRV 19863
tr_hit_id Q8I2U1
Definition tr|Q8I2U1|Q8I2U1_PLAF7 Putative uncharacterized protein PFI1040c OS=Plasmodium falciparum (isolate 3D7)
Align length 54
Score (bit) 35.0
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914200|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_B12.
         (523 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8I2U1|Q8I2U1_PLAF7 Putative uncharacterized protein PFI1040c...    35   2.2  
tr|Q97L30|Q97L30_CLOAB Possible glucanotransferase (Putative end...    35   3.0  
tr|A7Q5Y4|A7Q5Y4_VITVI Chromosome chr14 scaffold_54, whole genom...    34   5.1  
tr|A2GY81|A2GY81_TRIVA Putative uncharacterized protein OS=Trich...    33   8.5  
tr|A5C5B1|A5C5B1_VITVI Putative uncharacterized protein OS=Vitis...    33   8.6  
tr|Q29M23|Q29M23_DROPS GA19631 OS=Drosophila pseudoobscura pseud...    33   8.6  
tr|B4G6P5|B4G6P5_DROPE GL18564 OS=Drosophila persimilis GN=GL185...    33   8.6  

>tr|Q8I2U1|Q8I2U1_PLAF7 Putative uncharacterized protein PFI1040c
           OS=Plasmodium falciparum (isolate 3D7) GN=PFI1040c PE=4
           SV=1
          Length = 2290

 Score = 35.0 bits (79), Expect = 2.2
 Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
 Frame = +3

Query: 354 HSHKSEYFQNLKFEVDYSRC-L*RLLVSYCNEINFVSLHYVIKQGT*VWLHCQY 512
           H + S Y+Q LKF+V YS C     +  Y N+ +F ++H +++    V+ + QY
Sbjct: 639 HKNHSLYYQKLKFKVAYSLCHFDDEVTIYSNKESFSNIHILVEYSRLVYKYLQY 692


>tr|Q97L30|Q97L30_CLOAB Possible glucanotransferase (Putative endo
           alpha-1,4 polygalactosaminidase related protein)
           OS=Clostridium acetobutylicum GN=CA_C0736 PE=4 SV=1
          Length = 276

 Score = 34.7 bits (78), Expect = 3.0
 Identities = 20/54 (37%), Positives = 33/54 (61%)
 Frame = -1

Query: 334 TLLSLIMETNAKIVST*HDDNPSQMVRSSQFEREKKTKLVEKLNAKSGLYLALE 173
           +L SLI   N + V T  D N ++ +++S+ +R+KK K +EKL +K  L   +E
Sbjct: 192 SLKSLIHGINIESVYTTVDFNNNKFIKNSRDDRDKKVKYLEKLKSKDILIYIVE 245


>tr|A7Q5Y4|A7Q5Y4_VITVI Chromosome chr14 scaffold_54, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00031145001
           PE=4 SV=1
          Length = 614

 Score = 33.9 bits (76), Expect = 5.1
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 450 LSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLC 328
           +S Y  K+++F ++ N  P ISG E     +++RK S P+C
Sbjct: 300 ISTYREKRQSFCNDRNLNPSISGAEQDFLSSAQRKHSTPVC 340


>tr|A2GY81|A2GY81_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_082860 PE=4 SV=1
          Length = 425

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 7/42 (16%)
 Frame = +3

Query: 381 NLKFEVDY-------SRCL*RLLVSYCNEINFVSLHYVIKQG 485
           +LKFE DY       ++CL RLL +Y  +IN    HY++K G
Sbjct: 95  SLKFEGDYITIKNVNAKCLFRLLETYFKQINENEYHYLVKFG 136


>tr|A5C5B1|A5C5B1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_019534 PE=4 SV=1
          Length = 595

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 450 LSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLC 328
           +S Y  K+++F ++ N  P ISG E     +++RK S P+C
Sbjct: 273 ISTYREKRQSFCNDRNLNPSISGAEQDFLSSAQRKNSNPVC 313


>tr|Q29M23|Q29M23_DROPS GA19631 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA19631 PE=4 SV=2
          Length = 572

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = -2

Query: 495 ILKCLA*SHSEVKQN-LSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLCSAL 319
           + +CL  S   V Q  L+ Y  +Q+AFT N                  ER+  + LCS L
Sbjct: 448 VTRCLQQSLQLVAQRVLAFYRQEQQAFTGN------------------ERENFVKLCSCL 489

Query: 318 SWKLMP-------KLFPHNTMTTHL 265
           ++ L+P        +FP  ++T HL
Sbjct: 490 AYDLVPYVQRCIHGIFPPQSLTVHL 514


>tr|B4G6P5|B4G6P5_DROPE GL18564 OS=Drosophila persimilis GN=GL18564
           PE=4 SV=1
          Length = 572

 Score = 33.1 bits (74), Expect = 8.6
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
 Frame = -2

Query: 495 ILKCLA*SHSEVKQN-LSHYNMKQEAFTSNVNNPPQISGFESTHFCASERKPSIPLCSAL 319
           + +CL  S   V Q  L+ Y  +Q+AFT N                  ER+  + LCS L
Sbjct: 448 VTRCLQQSLQLVAQRVLAFYRQEQQAFTGN------------------ERENFVKLCSCL 489

Query: 318 SWKLMP-------KLFPHNTMTTHL 265
           ++ L+P        +FP  ++T HL
Sbjct: 490 AYDLVPYVQRCIHGIFPPQSLTVHL 514