BP914207
Clone id YMU001_000056_C08
Library
Length 295
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
GAGGCATCTGAACAAGAGTTGAATGATGCTATTGAAAACTGTTTGGTTGATATACAATCA
ATATGTGATAAGCATCACACATCAATTGAGATGCAAGATGAGCTTTTGAGAGTGCTATTT
GGAGGTTTAGGTCCATCAAAAGGAAAGCAGGCAGTCGGTGATCCCGTAAAGAAGTCGTTA
GCATCACTTTTAGTGCAAAAGTCAAGTAACTGGGATGGAAAGCTCAATGATAGACATTCC
ATCAAAATGGTCACAATTGATGGATTTCTATAAAGATTTAGGAATGGTTCCGCTT
■■Homology search results ■■ -
sp_hit_id Q72C25
Definition sp|Q72C25|TILS_DESVH tRNA(Ile)-lysidine synthase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303)
Align length 55
Score (bit) 29.6
E-value 5.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914207|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_C08.
(295 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q72C25|TILS_DESVH tRNA(Ile)-lysidine synthase OS=Desulfovibri... 30 5.0
sp|Q5ZLC1|RM50_CHICK 39S ribosomal protein L50, mitochondrial OS... 29 8.5

>sp|Q72C25|TILS_DESVH tRNA(Ile)-lysidine synthase OS=Desulfovibrio
vulgaris (strain Hildenborough / ATCC 29579 / NCIMB
8303) GN=tilS PE=3 SV=2
Length = 347

Score = 29.6 bits (65), Expect = 5.0
Identities = 16/55 (29%), Positives = 27/55 (49%)
Frame = +1

Query: 61 ICDKHHTSIEMQDELLRVLFGGLGPSKGKQAVGDPVKKSLASLLVQKSSNWDGKL 225
IC HH +D L+R++ G P+ G + DP ++ L LL+ + + L
Sbjct: 123 ICTGHHLGDLAEDVLMRLVRGCGWPALGGMRLCDPARRILRPLLLTEKDRLEAFL 177


>sp|Q5ZLC1|RM50_CHICK 39S ribosomal protein L50, mitochondrial
OS=Gallus gallus GN=MRPL50 PE=2 SV=1
Length = 161

Score = 28.9 bits (63), Expect = 8.5
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -1

Query: 181 LTTSLRDHRLPAFLLMDLNLQIALSKAHLASQLMCDAYHILIVY 50
L TSL+D+RL LL L ++ + + LMC A +L Y
Sbjct: 90 LQTSLKDNRLKYQLLAQLAAELGHAVPNSQLHLMCSAQDVLTFY 133


tr_hit_id B2APR7
Definition tr|B2APR7|B2APR7_PODAN Predicted CDS Pa_5_11000 OS=Podospora anserina
Align length 64
Score (bit) 34.7
E-value 2.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914207|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_C08.
(295 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B2APR7|B2APR7_PODAN Predicted CDS Pa_5_11000 OS=Podospora ans... 35 2.4
tr|A5ARM0|A5ARM0_VITVI Putative uncharacterized protein OS=Vitis... 33 7.0
tr|B8LXR2|B8LXR2_9EURO C6 transcription factor, putative OS=Tala... 33 9.2

>tr|B2APR7|B2APR7_PODAN Predicted CDS Pa_5_11000 OS=Podospora
anserina PE=4 SV=1
Length = 2276

Score = 34.7 bits (78), Expect = 2.4
Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -3

Query: 200 FCTKSDANDFFTGSPTACFPFDGPKPPNSTLKSSSCISIDV*C--LSHIDCISTKQFSIA 27
F T F TG + F F GP T SSS ++ID C + H DC S ++
Sbjct: 151 FSTLGTLRAFLTGKISHFFGFSGPSVTFDTACSSSAVAIDAACKAIIHGDCTSAIAGGVS 210

Query: 26 SFNS 15
F S
Sbjct: 211 IFTS 214


>tr|A5ARM0|A5ARM0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_025759 PE=4 SV=1
Length = 829

Score = 33.1 bits (74), Expect = 7.0
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Frame = +1

Query: 37 NCLVDIQSIC----DKHHTSIEMQDELLRVLFGGLGPSKGKQAVGDPVKKSLASLLVQKS 204
N L +Q++C D+ + D LL + GL S ++AV SL +Q
Sbjct: 548 NSLTTLQTLCGLFIDEETLVRDCLDRLLDIKKLGLTMSSKQEAV---------SLSLQAV 598

Query: 205 SNWDGKLNDRHSIKMVTID 261
++W KLN HS+++ +ID
Sbjct: 599 ADWISKLNQLHSLRLKSID 617


>tr|B8LXR2|B8LXR2_9EURO C6 transcription factor, putative
OS=Talaromyces stipitatus ATCC 10500 GN=TSTA_079190 PE=4
SV=1
Length = 668

Score = 32.7 bits (73), Expect = 9.2
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Frame = -3

Query: 227 LSFPSQ--LLDFCTKSDANDFFTGSPTACFPFDGPKPPNST 111
L FP +LDFC DAN+ T C P PP+ST
Sbjct: 460 LHFPRSNLILDFCADPDANENTTNENLLCGPISHKLPPSST 500