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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914214
Clone id YMU001_000056_D04
Library
Length 404
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTTTTTAACAAAACAAGGCCATTAAACAGCTCTATAAATTACATGAGAGT
TTAATCTTCCCCTGAAGATTATTACAATAATCAAAAAATGCATCTCTGGAGAAAGTTCAT
GTGTATTATCCGTCAATCGGGTCAGTAGACGCACGTCTTTGTAAGCCAAAAAAGATAATT
GCTTGGTCCAGTTGCCAAGCGCTCGTATGCCATAAAAGATGCAAATAACATCTCATAGTA
CCTTCATAGTTGGTATTCCGTTGATGATGTATAAGTAACAAAGTGTGATTCTGTGATAGG
CTTGATTACTGTGAAAAAGATACAGCACCCTTGCATAGTTTGTTCGTGTACACATTGTTG
TAGATTGTTCACAAGCCACCGTAGATTGATTGTACTGCTCCATA
■■Homology search results ■■ -
sp_hit_id Q8CJF7
Definition sp|Q8CJF7|AHTF1_MOUSE AT-hook-containing transcription factor 1 OS=Mus musculus
Align length 40
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914214|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_D04.
         (388 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8CJF7|AHTF1_MOUSE AT-hook-containing transcription factor 1 ...    31   1.7  
sp|Q8WYP5|AHTF1_HUMAN AT-hook-containing transcription factor 1 ...    30   2.9  
sp|Q9EPK2|XRP2_MOUSE Protein XRP2 OS=Mus musculus GN=Rp2 PE=2 SV=3     30   3.8  
sp|O75695|XRP2_HUMAN Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4     30   4.9  
sp|Q9H1D0|TRPV6_HUMAN Transient receptor potential cation channe...    29   6.5  
sp|Q9R186|TRPV6_RAT Transient receptor potential cation channel ...    29   8.4  
sp|Q91WD2|TRPV6_MOUSE Transient receptor potential cation channe...    29   8.4  
sp|P14574|COX3_LOCMI Cytochrome c oxidase subunit 3 OS=Locusta m...    29   8.4  
sp|P80595|APY_SOLTU Apyrase OS=Solanum tuberosum GN=RROP1 PE=1 SV=2    29   8.4  

>sp|Q8CJF7|AHTF1_MOUSE AT-hook-containing transcription factor 1
            OS=Mus musculus GN=Ahctf1 PE=1 SV=1
          Length = 2243

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 334  YTNKLCKGAVSFSQ*SSLSQNHTLLLIHHQRNTNYEGTMR 215
            +TN   +  V F Q S+  +NH  LL+HH +  NY   ++
Sbjct: 930  FTNTEQECLVKFLQSSTSVENHEFLLVHHLQRANYISALK 969


>sp|Q8WYP5|AHTF1_HUMAN AT-hook-containing transcription factor 1
            OS=Homo sapiens GN=AHCTF1 PE=1 SV=2
          Length = 2275

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 307  VSFSQ*SSLSQNHTLLLIHHQRNTNY 230
            V F Q S+  QNH  LL+HH +  NY
Sbjct: 948  VKFLQSSASVQNHEFLLVHHLQRANY 973


>sp|Q9EPK2|XRP2_MOUSE Protein XRP2 OS=Mus musculus GN=Rp2 PE=2 SV=3
          Length = 347

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 163 LLGPVAKRSYAIKDANNIS*YL--HS-WYSVDDV*VTKCDSVIGLITVKKIQHPCIVCSC 333
           L G VA + + I+D  N + Y+  HS   ++DD   T C   +G +        C  C C
Sbjct: 50  LPGKVAGQQFVIQDCENCNIYIFDHSATITIDDC--TNCVIFLGPVKGSVFFRNCRDCKC 107

Query: 334 THCCRLF 354
           T  C+ F
Sbjct: 108 TLACQQF 114


>sp|O75695|XRP2_HUMAN Protein XRP2 OS=Homo sapiens GN=RP2 PE=1 SV=4
          Length = 350

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
 Frame = +1

Query: 163 LLGPVAKRSYAIKDANNIS*YL--HS-WYSVDDV*VTKCDSVIGLITVKKIQHPCIVCSC 333
           L G VA + + I+D  N + Y+  HS   ++DD   T C   +G +        C  C C
Sbjct: 53  LPGTVAGQQFLIQDCENCNIYIFDHSATVTIDDC--TNCIIFLGPVKGSVFFRNCRDCKC 110

Query: 334 THCCRLF 354
           T  C+ F
Sbjct: 111 TLACQQF 117


>sp|Q9H1D0|TRPV6_HUMAN Transient receptor potential cation channel
           subfamily V member 6 OS=Homo sapiens GN=TRPV6 PE=1 SV=2
          Length = 725

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 347 LQQCVHEQTMQGCCIFFTVIKPITESHFVTYTSSTEYQL*RYYEMLFASFMAYERLAT-- 174
           +Q+ +    M+ C +   VI     + ++ + +    +L  +Y+   A F  +E   T  
Sbjct: 482 IQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPEELGHFYDYPMALFSTFELFLTII 541

Query: 173 -GPSNY 159
            GP+NY
Sbjct: 542 DGPANY 547


>sp|Q9R186|TRPV6_RAT Transient receptor potential cation channel
           subfamily V member 6 OS=Rattus norvegicus GN=Trpv6 PE=2
           SV=1
          Length = 727

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 347 LQQCVHEQTMQGCCIFFTVIKPITESHFVTYTSSTEYQL*RYYEMLFASFMAYERLAT-- 174
           +Q+ +    M+ C +   VI     + ++ + +    +L  +Y+   A F  +E   T  
Sbjct: 481 IQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPDELGHFYDYPMALFSTFELFLTII 540

Query: 173 -GPSNY 159
            GP+NY
Sbjct: 541 DGPANY 546


>sp|Q91WD2|TRPV6_MOUSE Transient receptor potential cation channel
           subfamily V member 6 OS=Mus musculus GN=Trpv6 PE=1 SV=1
          Length = 727

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
 Frame = -3

Query: 347 LQQCVHEQTMQGCCIFFTVIKPITESHFVTYTSSTEYQL*RYYEMLFASFMAYERLAT-- 174
           +Q+ +    M+ C +   VI     + ++ + +    +L  +Y+   A F  +E   T  
Sbjct: 481 IQKMIFGDLMRFCWLMAVVILGFASAFYIIFQTEDPDELGHFYDYPMALFSTFELFLTII 540

Query: 173 -GPSNY 159
            GP+NY
Sbjct: 541 DGPANY 546


>sp|P14574|COX3_LOCMI Cytochrome c oxidase subunit 3 OS=Locusta
           migratoria GN=COIII PE=3 SV=1
          Length = 263

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 383 SSTINLRWLVNNLQQCVHEQTMQGCCIFFTVI 288
           +S + + W  +++ +C H Q +QG  +FFTV+
Sbjct: 141 ASGVTITWAHHSIMECNHSQALQG--LFFTVM 170


>sp|P80595|APY_SOLTU Apyrase OS=Solanum tuberosum GN=RROP1 PE=1 SV=2
          Length = 454

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 75  SKNASLEKVHVYYPSIGSVDARLCKPKKIIAWSSCQALVCH 197
           S   +LE    YY S G VD ++  PKK  +W  C+ L  H
Sbjct: 264 SNPCALEGCDGYY-SYGGVDYKVKAPKKGSSWKRCRRLTRH 303
tr_hit_id B8BR77
Definition tr|B8BR77|B8BR77_THAPS Putative uncharacterized protein OS=Thalassiosira pseudonana CCMP1335
Align length 46
Score (bit) 38.9
E-value 0.13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914214|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_D04.
         (388 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8BR77|B8BR77_THAPS Putative uncharacterized protein OS=Thala...    39   0.13 

>tr|B8BR77|B8BR77_THAPS Putative uncharacterized protein
           OS=Thalassiosira pseudonana CCMP1335
           GN=THAPSDRAFT_268054 PE=4 SV=1
          Length = 440

 Score = 38.9 bits (89), Expect = 0.13
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = -3

Query: 368 LRWLVNNLQQCVHEQTMQGCCIFFTVIKPITESHFVTYTSSTEYQL 231
           LRW+++++Q C+ +    GCC   T  + ITES    Y S   + L
Sbjct: 311 LRWMLHSVQHCIEDSRWNGCCSLQTATQIITESFCKGYNSLPSFYL 356