BP914230
Clone id YMU001_000056_E09
Library
Length 264
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_E09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ATTCCAATGGTTCCATTTTCCTTCATTTCGCAATCCCCATTTCAAGTGCAATTTAGCTTC
ACATTACGGAGATCGTAGTTGCTCTTTTATTCTAATGCAGATTTGCTACTGCAGGGCTAG
GTATGAAGATGCCAAGTTTTTCTATCAGTCGGATGTTTCAAAGGCTTTAGTGGATTTTCG
CCCACAACTGAAGGGAATTCTTTTTCAAGAGAAGCTAGGTACAATGCTAGATAAGAGCAT
CCGAGTGGAGAGGATGATTACAGA
■■Homology search results ■■ -
sp_hit_id Q8L785
Definition sp|Q8L785|SYGM2_ARATH Glycyl-tRNA synthetase 2, chloroplastic/mitochondrial OS=Arabidopsis thaliana
Align length 50
Score (bit) 69.3
E-value 6.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914230|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_E09.
(264 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8L785|SYGM2_ARATH Glycyl-tRNA synthetase 2, chloroplastic/mi... 69 6e-12
sp|P59573|SYGB_BUCBP Glycyl-tRNA synthetase beta subunit OS=Buch... 58 2e-08
sp|Q55690|SYGB_SYNY3 Glycyl-tRNA synthetase beta subunit OS=Syne... 54 2e-07
sp|Q7VKG6|SYGB_HAEDU Glycyl-tRNA synthetase beta subunit OS=Haem... 52 7e-07
sp|P43822|SYGB_HAEIN Glycyl-tRNA synthetase beta subunit OS=Haem... 52 9e-07
sp|A5UI65|SYGB_HAEIG Glycyl-tRNA synthetase beta subunit OS=Haem... 52 9e-07
sp|A5UDE3|SYGB_HAEIE Glycyl-tRNA synthetase beta subunit OS=Haem... 52 9e-07
sp|Q4QLY5|SYGB_HAEI8 Glycyl-tRNA synthetase beta subunit OS=Haem... 52 9e-07
sp|P57905|SYGB_PASMU Glycyl-tRNA synthetase beta subunit OS=Past... 50 3e-06
sp|Q65R47|SYGB_MANSM Glycyl-tRNA synthetase beta subunit OS=Mann... 50 4e-06
sp|O67898|SYGB_AQUAE Glycyl-tRNA synthetase beta subunit OS=Aqui... 50 4e-06
sp|A6VLE1|SYGB_ACTSZ Glycyl-tRNA synthetase beta subunit OS=Acti... 50 4e-06
sp|B0UWA9|SYGB_HAES2 Glycyl-tRNA synthetase beta subunit OS=Haem... 50 5e-06
sp|Q0I273|SYGB_HAES1 Glycyl-tRNA synthetase beta subunit OS=Haem... 50 5e-06
sp|A3N3A1|SYGB_ACTP2 Glycyl-tRNA synthetase beta subunit OS=Acti... 50 5e-06
sp|Q8ZL96|SYGB_SALTY Glycyl-tRNA synthetase beta subunit OS=Salm... 48 1e-05
sp|A9MUU1|SYGB_SALPB Glycyl-tRNA synthetase beta subunit OS=Salm... 48 1e-05
sp|Q5PLN2|SYGB_SALPA Glycyl-tRNA synthetase beta subunit OS=Salm... 48 1e-05
sp|Q57IG6|SYGB_SALCH Glycyl-tRNA synthetase beta subunit OS=Salm... 48 1e-05
sp|A9MLF8|SYGB_SALAR Glycyl-tRNA synthetase beta subunit OS=Salm... 48 1e-05
sp|A7MKS3|SYGB_ENTS8 Glycyl-tRNA synthetase beta subunit OS=Ente... 48 1e-05
sp|Q663V8|SYGB_YERPS Glycyl-tRNA synthetase beta subunit OS=Yers... 48 2e-05
sp|A4TGN7|SYGB_YERPP Glycyl-tRNA synthetase beta subunit OS=Yers... 48 2e-05
sp|Q1CD86|SYGB_YERPN Glycyl-tRNA synthetase beta subunit OS=Yers... 48 2e-05
sp|Q8Z9W7|SYGB_YERPE Glycyl-tRNA synthetase beta subunit OS=Yers... 48 2e-05
sp|Q1C3J8|SYGB_YERPA Glycyl-tRNA synthetase beta subunit OS=Yers... 48 2e-05
sp|A7FP95|SYGB_YERP3 Glycyl-tRNA synthetase beta subunit OS=Yers... 48 2e-05
sp|A1JT50|SYGB_YERE8 Glycyl-tRNA synthetase beta subunit OS=Yers... 48 2e-05
sp|A5IKK4|SYGB_THEP1 Glycyl-tRNA synthetase beta subunit OS=Ther... 48 2e-05
sp|Q9WY60|SYGB_THEMA Glycyl-tRNA synthetase beta subunit OS=Ther... 48 2e-05

>sp|Q8L785|SYGM2_ARATH Glycyl-tRNA synthetase 2,
chloroplastic/mitochondrial OS=Arabidopsis thaliana
GN=GLYRS-2 PE=1 SV=1
Length = 1067

Score = 69.3 bits (168), Expect = 6e-12
Identities = 32/50 (64%), Positives = 40/50 (80%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMIT 262
RARYEDAKFFY+ D K +FR QL+GILF EKLGTMLDK R+++M++
Sbjct: 701 RARYEDAKFFYEVDTRKRFSEFRDQLQGILFHEKLGTMLDKMNRLKKMVS 750


>sp|P59573|SYGB_BUCBP Glycyl-tRNA synthetase beta subunit
OS=Buchnera aphidicola subsp. Baizongia pistaciae
GN=glyS PE=3 SV=1
Length = 697

Score = 57.8 bits (138), Expect = 2e-08
Identities = 23/49 (46%), Positives = 39/49 (79%)
Frame = +2

Query: 116 ARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMIT 262
A++ DA+FF++ D K L+D++P LK I+F + LGT+LDK+ R++++IT
Sbjct: 325 AQFVDAEFFFKKDTKKKLIDYKPLLKKIIFHDTLGTLLDKTHRIKKLIT 373


>sp|Q55690|SYGB_SYNY3 Glycyl-tRNA synthetase beta subunit
OS=Synechocystis sp. (strain PCC 6803) GN=glyS PE=3 SV=1
Length = 722

Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/48 (54%), Positives = 33/48 (68%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
RAR DAKFFYQ+D +L + PQL+ + FQE+LGTM DK R+ M
Sbjct: 326 RARLADAKFFYQADCDDSLDSYLPQLETVTFQEELGTMRDKVDRIMEM 373


>sp|Q7VKG6|SYGB_HAEDU Glycyl-tRNA synthetase beta subunit
OS=Haemophilus ducreyi GN=glyS PE=3 SV=1
Length = 688

Score = 52.4 bits (124), Expect = 7e-07
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
R R DA+FF+++D+ + LVD P+L+ +LFQ++LGT+ DK+ R+E++
Sbjct: 324 RPRLSDAEFFFKTDLKQRLVDQLPRLETVLFQQQLGTLRDKTDRIEQL 371


>sp|P43822|SYGB_HAEIN Glycyl-tRNA synthetase beta subunit
OS=Haemophilus influenzae GN=glyS PE=3 SV=1
Length = 688

Score = 52.0 bits (123), Expect = 9e-07
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
R R DA+FF+++D+ + LVD P+L+ +LFQ++LGT+ DK+ R+E++
Sbjct: 324 RPRLTDAEFFFKTDLKQKLVDRLPRLETVLFQQQLGTLKDKTDRIEQL 371


>sp|A5UI65|SYGB_HAEIG Glycyl-tRNA synthetase beta subunit
OS=Haemophilus influenzae (strain PittGG) GN=glyS PE=3
SV=1
Length = 688

Score = 52.0 bits (123), Expect = 9e-07
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
R R DA+FF+++D+ + LVD P+L+ +LFQ++LGT+ DK+ R+E++
Sbjct: 324 RPRLTDAEFFFKTDLKQKLVDRLPRLETVLFQQQLGTLKDKTDRIEQL 371


>sp|A5UDE3|SYGB_HAEIE Glycyl-tRNA synthetase beta subunit
OS=Haemophilus influenzae (strain PittEE) GN=glyS PE=3
SV=1
Length = 688

Score = 52.0 bits (123), Expect = 9e-07
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
R R DA+FF+++D+ + LVD P+L+ +LFQ++LGT+ DK+ R+E++
Sbjct: 324 RPRLTDAEFFFKTDLKQKLVDRLPRLETVLFQQQLGTLKDKTDRIEQL 371


>sp|Q4QLY5|SYGB_HAEI8 Glycyl-tRNA synthetase beta subunit
OS=Haemophilus influenzae (strain 86-028NP) GN=glyS PE=3
SV=1
Length = 722

Score = 52.0 bits (123), Expect = 9e-07
Identities = 22/48 (45%), Positives = 38/48 (79%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
R R DA+FF+++D+ + LVD P+L+ +LFQ++LGT+ DK+ R+E++
Sbjct: 324 RPRLTDAEFFFKTDLKQKLVDRLPRLETVLFQQQLGTLKDKTDRIEQL 371


>sp|P57905|SYGB_PASMU Glycyl-tRNA synthetase beta subunit
OS=Pasteurella multocida GN=glyS PE=3 SV=1
Length = 689

Score = 50.4 bits (119), Expect = 3e-06
Identities = 21/48 (43%), Positives = 37/48 (77%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
R R DA+FF+++D+ + L D P+L+ +LFQ++LGT+ DK+ R+E++
Sbjct: 324 RPRLTDAEFFFKTDLKQRLEDQLPRLETVLFQQQLGTLRDKTARIEQL 371


>sp|Q65R47|SYGB_MANSM Glycyl-tRNA synthetase beta subunit
OS=Mannheimia succiniciproducens (strain MBEL55E)
GN=glyS PE=3 SV=1
Length = 689

Score = 50.1 bits (118), Expect = 4e-06
Identities = 21/48 (43%), Positives = 35/48 (72%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
R R DA+FF+ +D + L D P+L+ +LFQ++LGT+LDK+ R++ +
Sbjct: 324 RPRLSDAEFFFNTDKKQRLEDLLPRLETVLFQQQLGTLLDKTKRIQAL 371


tr_hit_id A9TR89
Definition tr|A9TR89|A9TR89_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 49
Score (bit) 75.9
E-value 1.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914230|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_E09.
(264 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TR89|A9TR89_PHYPA Predicted protein OS=Physcomitrella paten... 76 1e-12
tr|A7PK96|A7PK96_VITVI Chromosome chr15 scaffold_19, whole genom... 73 8e-12
tr|A9PI70|A9PI70_POPTR Putative uncharacterized protein OS=Popul... 72 1e-11
tr|Q01DM7|Q01DM7_OSTTA Putative aminoacyl-t-RNA synthetase (ISS)... 71 2e-11
tr|A4RTK9|A4RTK9_OSTLU Predicted protein OS=Ostreococcus lucimar... 69 2e-10
tr|Q5VRH2|Q5VRH2_ORYSJ Os06g0103600 protein OS=Oryza sativa subs... 67 6e-10
tr|B8B198|B8B198_ORYSI Putative uncharacterized protein OS=Oryza... 67 6e-10
tr|A3B7J3|A3B7J3_ORYSJ Putative uncharacterized protein OS=Oryza... 67 6e-10
tr|A8IB17|A8IB17_CHLRE Predicted protein OS=Chlamydomonas reinha... 61 2e-08
tr|B5YJ12|B5YJ12_THEYD Glycyl-tRNA synthetase, beta subunit OS=T... 55 2e-06
tr|A4ECI8|A4ECI8_9ACTN Putative uncharacterized protein OS=Colli... 55 2e-06
tr|A5EV43|A5EV43_DICNV Glycyl-tRNA synthetase, beta subunit OS=D... 54 4e-06
tr|B3TCD6|B3TCD6_9CREN Putative glycyl-tRNA synthetase beta subu... 54 4e-06
tr|B3TA95|B3TA95_9CREN Putative glycyl-tRNA synthetase beta subu... 54 4e-06
tr|A4NPZ4|A4NPZ4_HAEIN Glycyl-tRNA synthetase subunit beta OS=Ha... 54 5e-06
tr|A4MWA8|A4MWA8_HAEIN Glycyl-tRNA synthetase subunit beta OS=Ha... 54 5e-06
tr|A0ZCB7|A0ZCB7_NODSP Glycyl and Arginyl tRNA synthetase OS=Nod... 53 7e-06
tr|Q31IS2|Q31IS2_THICR Glycyl-tRNA synthetase, beta subunit OS=T... 53 9e-06
tr|B0ADJ3|B0ADJ3_9CLOT Putative uncharacterized protein OS=Clost... 52 1e-05
tr|A4NCX1|A4NCX1_HAEIN Glycyl-tRNA synthetase beta subunit OS=Ha... 52 1e-05
tr|A4N809|A4N809_HAEIN Glycyl-tRNA synthetase beta subunit OS=Ha... 52 1e-05
tr|A4N1L2|A4N1L2_HAEIN Glycyl-tRNA synthetase beta subunit OS=Ha... 52 1e-05
tr|B2V9P9|B2V9P9_SULSY Glycyl-tRNA synthetase, beta subunit OS=S... 52 2e-05
tr|B6G1Q8|B6G1Q8_9CLOT Putative uncharacterized protein OS=Clost... 51 3e-05
tr|A3WT86|A3WT86_9BRAD Glycyl-tRNA synthetase beta subunit OS=Ni... 51 3e-05
tr|Q3AEY3|Q3AEY3_CARHZ Glycyl-tRNA synthetase, beta subunit OS=C... 51 3e-05
tr|Q20YB5|Q20YB5_RHOPB Glycine--tRNA ligase OS=Rhodopseudomonas ... 50 4e-05
tr|B0JVW9|B0JVW9_MICAN Glycyl-tRNA synthetase beta chain OS=Micr... 50 4e-05
tr|A9FHB3|A9FHB3_SORC5 Glycyl-tRNA synthetase beta chain OS=Sora... 50 4e-05
tr|A7HLX0|A7HLX0_FERNB Glycyl-tRNA synthetase, beta subunit OS=F... 50 4e-05

>tr|A9TR89|A9TR89_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_171503 PE=4 SV=1
Length = 1124

Score = 75.9 bits (185), Expect = 1e-12
Identities = 35/49 (71%), Positives = 42/49 (85%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMI 259
RARYEDA+FFY++D SK L D+RP L+GI FQEKLG+MLDKS RVE M+
Sbjct: 758 RARYEDARFFYEADTSKPLADYRPLLQGITFQEKLGSMLDKSKRVEAMV 806


>tr|A7PK96|A7PK96_VITVI Chromosome chr15 scaffold_19, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00019071001
PE=4 SV=1
Length = 636

Score = 72.8 bits (177), Expect = 8e-12
Identities = 34/49 (69%), Positives = 39/49 (79%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMI 259
RARYEDAKFFY+ D K +FR QL+GILF EKLGTMLDK IRV+ M+
Sbjct: 270 RARYEDAKFFYEMDTRKKFSEFRSQLEGILFHEKLGTMLDKMIRVQNMV 318


>tr|A9PI70|A9PI70_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 512

Score = 72.4 bits (176), Expect = 1e-11
Identities = 35/50 (70%), Positives = 39/50 (78%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMIT 262
RARYEDAKFFY+ D K +FR QL GILF EKLGTMLDK +RVE +IT
Sbjct: 146 RARYEDAKFFYEMDTRKKFSEFRNQLDGILFHEKLGTMLDKMMRVENVIT 195


>tr|Q01DM7|Q01DM7_OSTTA Putative aminoacyl-t-RNA synthetase (ISS)
(Fragment) OS=Ostreococcus tauri GN=Ot02g07010 PE=4 SV=1
Length = 950

Score = 71.2 bits (173), Expect = 2e-11
Identities = 31/50 (62%), Positives = 42/50 (84%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMIT 262
RARYEDAKFFY+SD+ K L DF+P+L GI FQ++LG ML+K+ RVE +++
Sbjct: 583 RARYEDAKFFYESDLKKKLADFKPELSGITFQQELGNMLEKTRRVEGLVS 632


>tr|A4RTK9|A4RTK9_OSTLU Predicted protein OS=Ostreococcus
lucimarinus (strain CCE9901) GN=OSTLU_29834 PE=4 SV=1
Length = 1051

Score = 68.6 bits (166), Expect = 2e-10
Identities = 29/49 (59%), Positives = 42/49 (85%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMI 259
RARYEDAKFFY++D++K L +F+P+L GI FQ++LG ML+K+ RVE ++
Sbjct: 684 RARYEDAKFFYETDLNKPLAEFKPELSGITFQQELGNMLEKTQRVEGLV 732


>tr|Q5VRH2|Q5VRH2_ORYSJ Os06g0103600 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0075G19.30-1 PE=4 SV=1
Length = 1068

Score = 66.6 bits (161), Expect = 6e-10
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMI 259
RARYEDAKFFY+ D K L +FR QL ILF E+LGTMLDK RVE +
Sbjct: 702 RARYEDAKFFYKMDTQKKLSEFRDQLSSILFHERLGTMLDKMKRVENTV 750


>tr|B8B198|B8B198_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_21278 PE=4 SV=1
Length = 1068

Score = 66.6 bits (161), Expect = 6e-10
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMI 259
RARYEDAKFFY+ D K L +FR QL ILF E+LGTMLDK RVE +
Sbjct: 702 RARYEDAKFFYKMDTQKKLSEFRDQLSSILFHERLGTMLDKMKRVENTV 750


>tr|A3B7J3|A3B7J3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_019015 PE=4 SV=1
Length = 1122

Score = 66.6 bits (161), Expect = 6e-10
Identities = 32/49 (65%), Positives = 36/49 (73%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMI 259
RARYEDAKFFY+ D K L +FR QL ILF E+LGTMLDK RVE +
Sbjct: 756 RARYEDAKFFYKMDTQKKLSEFRDQLSSILFHERLGTMLDKMKRVENTV 804


>tr|A8IB17|A8IB17_CHLRE Predicted protein OS=Chlamydomonas
reinhardtii GN=CHLREDRAFT_126079 PE=4 SV=1
Length = 1097

Score = 61.2 bits (147), Expect = 2e-08
Identities = 27/49 (55%), Positives = 39/49 (79%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERMI 259
RAR+EDA FFY+ D+ + L DFRP+L G FQ++LG++L KS RVE+++
Sbjct: 730 RARFEDAAFFYREDLKQPLQDFRPKLSGTTFQKELGSLLAKSDRVEQLV 778


>tr|B5YJ12|B5YJ12_THEYD Glycyl-tRNA synthetase, beta subunit
OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
DSM 11347 / YP87) GN=glyS PE=4 SV=1
Length = 679

Score = 55.1 bits (131), Expect = 2e-06
Identities = 22/48 (45%), Positives = 37/48 (77%)
Frame = +2

Query: 113 RARYEDAKFFYQSDVSKALVDFRPQLKGILFQEKLGTMLDKSIRVERM 256
+AR+EDA+F+Y+ D+ K LV+ KGI++ +KLG++ DKS+R+ R+
Sbjct: 320 KARFEDARFYYEEDLKKGLVNLLEATKGIIYHKKLGSLYDKSLRIIRI 367