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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914241
Clone id YMU001_000056_F08
Library
Length 411
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_F08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTGAACGTAGCCTTAAATAAATGAACGCGGGAAAAACATCGGCCTGCAGTTTGTTGTGG
ACCGCAGTGGACTCACTGTGGCTAGAGGGGCAAGGCAAAGTTGGAAGATTACACGGTCAG
GAGCAGAGAGATATCCAGGACAATTCGCTTCGCAAACTGGGCGCTGTGGAAGATAGCAAT
GAGGTGATGGTCTCTGGTAGTGAAATAAGAGCCGCATGCTCTTACATGCCCACAAGATAT
GGGTTTGCCCCGGGAAAATGGGAGCTGGACACTAGTGTGAAGAATCAAGATGAGAATCTT
TTGCATGAGGTTCTGACAAGGTGCGCTATTGATTTCTTTCAGCAACGGATGGGGTCCTAA
ACCTTCCGCATATGTCTTAGCCTTTCATGGTTCTGACAATCACTAGAGTTC
■■Homology search results ■■ -
sp_hit_id A1U3F2
Definition sp|A1U3F2|LPXC_MARAV UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8)
Align length 56
Score (bit) 35.4
E-value 0.09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914241|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_F08.
         (411 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1U3F2|LPXC_MARAV UDP-3-O-[3-hydroxymyristoyl] N-acetylglucos...    35   0.090
sp|Q53515|NODU_RHITR Nodulation protein U OS=Rhizobium tropici G...    30   3.8  
sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BES...    30   4.9  
sp|Q86ZF9|GLNA_NEUCR Glutamine synthetase OS=Neurospora crassa G...    29   6.5  
sp|P10747|CD28_HUMAN T-cell-specific surface glycoprotein CD28 O...    29   6.5  
sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2 OS...    29   8.4  
sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2 OS...    29   8.4  
sp|Q6NZK8|PTPC1_MOUSE Protein tyrosine phosphatase domain-contai...    29   8.5  
sp|P09606|GLNA_RAT Glutamine synthetase OS=Rattus norvegicus GN=...    29   8.5  
sp|Q9QY94|GLNA_ACOCA Glutamine synthetase OS=Acomys cahirinus GN...    29   8.5  

>sp|A1U3F2|LPXC_MARAV UDP-3-O-[3-hydroxymyristoyl]
           N-acetylglucosamine deacetylase OS=Marinobacter
           aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=lpxC
           PE=3 SV=1
          Length = 304

 Score = 35.4 bits (80), Expect = 0.090
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
 Frame = +1

Query: 64  AVDSLWLEGQGKVGRLHG-QEQRDIQDNSLRKLGAVEDSNEVMVSGSEIRAACSYM 228
           A+  L+L G   +G   G +   D+ +  LRKL A ED+ EV+    E  A  SYM
Sbjct: 242 AIGDLYLLGNSLIGEFRGIKSGHDLNNKLLRKLRAEEDAWEVVTFDDEATAPISYM 297


>sp|Q53515|NODU_RHITR Nodulation protein U OS=Rhizobium tropici
           GN=nodU PE=3 SV=1
          Length = 575

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 193 SGSEIRAACSYMPTRYGFAPGKWEL--DTSVKNQD 291
           SGS I AACS M    GF P +W +    ++KN D
Sbjct: 338 SGSAIGAACSAMAAHEGFVPLEWSVYSGPALKNGD 372


>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1
           PE=2 SV=1
          Length = 585

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 31  GKTSACSLLWTAVDSLWLEGQGKVGRLHGQEQRDIQDNSLRKLGAVE 171
           G  S   LLW   +SL  EG  K  +   Q  R ++DN   KL AV+
Sbjct: 405 GANSRTKLLWPKRESLLHEGLPKNHKAVKQNVRGLEDNKAWKLKAVD 451


>sp|Q86ZF9|GLNA_NEUCR Glutamine synthetase OS=Neurospora crassa
           GN=gln-1 PE=3 SV=1
          Length = 362

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 105 KITRSGAERYPGQFASQTGRCGR*Q*GDGLW**NKSRMLLH 227
           KI+ + AE  P Q+  Q G C   + GD LW    +R LLH
Sbjct: 190 KISGTNAEVMPAQWEFQVGPCDGIEMGDHLW---LARFLLH 227


>sp|P10747|CD28_HUMAN T-cell-specific surface glycoprotein CD28
           OS=Homo sapiens GN=CD28 PE=1 SV=1
          Length = 220

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 292 HLDSSH*CPAPIFPGQTHILW 230
           H+   H CP+P+FPG +   W
Sbjct: 134 HVKGKHLCPSPLFPGPSKPFW 154


>sp|Q3TIX9|SNUT2_MOUSE U4/U6.U5 tri-snRNP-associated protein 2
           OS=Mus musculus GN=Usp39 PE=2 SV=2
          Length = 564

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 240 ISCGHVRA-----CGSYFTTRDHHLIAIFHSAQFAKRIVLDISLL 121
           IS  H+ A     CG YF  R     A  HS QF+  + L++  L
Sbjct: 125 ISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTL 169


>sp|Q53GS9|SNUT2_HUMAN U4/U6.U5 tri-snRNP-associated protein 2
           OS=Homo sapiens GN=USP39 PE=1 SV=2
          Length = 565

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 5/45 (11%)
 Frame = -1

Query: 240 ISCGHVRA-----CGSYFTTRDHHLIAIFHSAQFAKRIVLDISLL 121
           IS  H+ A     CG YF  R     A  HS QF+  + L++  L
Sbjct: 126 ISLSHINAYACLVCGKYFQGRGLKSHAYIHSVQFSHHVFLNLHTL 170


>sp|Q6NZK8|PTPC1_MOUSE Protein tyrosine phosphatase
           domain-containing protein 1 OS=Mus musculus GN=Ptpdc1
           PE=2 SV=1
          Length = 747

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
 Frame = -3

Query: 232 WACKSMRLLFH---YQRPSPHCYLPQRP 158
           W   +  LL H   +Q+P+ HCY+P  P
Sbjct: 412 WTVPAQELLDHSLQHQKPTSHCYMPPTP 439


>sp|P09606|GLNA_RAT Glutamine synthetase OS=Rattus norvegicus
           GN=Glul PE=1 SV=3
          Length = 373

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 105 KITRSGAERYPGQFASQTGRCGR*Q*GDGLW**NKSRMLLH 227
           KIT + AE  P Q+  Q G C   + GD LW    +R +LH
Sbjct: 189 KITGTNAEVMPAQWEFQIGPCEGIRMGDHLW---VARFILH 226


>sp|Q9QY94|GLNA_ACOCA Glutamine synthetase OS=Acomys cahirinus
           GN=GLUL PE=2 SV=3
          Length = 373

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = +3

Query: 105 KITRSGAERYPGQFASQTGRCGR*Q*GDGLW**NKSRMLLH 227
           KIT + AE  P Q+  Q G C   + GD LW    +R +LH
Sbjct: 189 KITGTNAEVMPAQWEFQIGPCEGIRMGDHLW---VARFILH 226
tr_hit_id A6F2T2
Definition tr|A6F2T2|A6F2T2_9ALTE UDP-3-0-acyl N-acetylglucosamine deacetylase OS=Marinobacter algicola DG893
Align length 59
Score (bit) 33.5
E-value 5.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914241|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_F08.
         (411 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6F2T2|A6F2T2_9ALTE UDP-3-0-acyl N-acetylglucosamine deacetyl...    33   5.4  
tr|Q9Y1W6|Q9Y1W6_TENMO 56 kDa early-staged encapsulation-inducin...    33   5.4  
tr|A1CDS9|A1CDS9_ASPCL C2H2 finger domain protein, putative OS=A...    33   7.1  
tr|Q0UPY9|Q0UPY9_PHANO Putative uncharacterized protein OS=Phaeo...    33   7.1  
tr|B6KCW3|B6KCW3_TOXGO Putative uncharacterized protein OS=Toxop...    33   9.3  

>tr|A6F2T2|A6F2T2_9ALTE UDP-3-0-acyl N-acetylglucosamine deacetylase
           OS=Marinobacter algicola DG893 GN=MDG893_12660 PE=4 SV=1
          Length = 304

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 55  LWTAVDSLWLEGQGKVGRLHG-QEQRDIQDNSLRKLGAVEDSNEVMVSGSEIRAACSYM 228
           L  A+  L+  G   +G   G +   D+ +  LRKL A ED+ EV+    E  A  SYM
Sbjct: 239 LLDAIGDLYQLGNSLIGEFRGIKSGHDLNNKLLRKLRAEEDAWEVVTFDDEAAAPISYM 297


>tr|Q9Y1W6|Q9Y1W6_TENMO 56 kDa early-staged encapsulation-inducing
           protein OS=Tenebrio molitor GN=enp-2 PE=2 SV=1
          Length = 579

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/39 (46%), Positives = 23/39 (58%)
 Frame = +1

Query: 58  WTAVDSLWLEGQGKVGRLHGQEQRDIQDNSLRKLGAVED 174
           W++VDSL  E + K G L G+ Q DI D  LR+   V D
Sbjct: 87  WSSVDSLSEEWRSKRGSLKGRTQGDILDEILREYQGVVD 125


>tr|A1CDS9|A1CDS9_ASPCL C2H2 finger domain protein, putative
            OS=Aspergillus clavatus GN=ACLA_007650 PE=4 SV=1
          Length = 1033

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
 Frame = +1

Query: 52   LLWTAVDSLWLEGQGKVGRLHG--------QEQRDIQDNSLRKLGAVEDSNEVMVSGSEI 207
            +++ AV  +W  G    G +          ++QRD++   LR++G V D NE+       
Sbjct: 933  VIYVAVLVVWCYGYALDGPIASPPVLATVAEQQRDMEA-FLRRVGGVRDPNELATMKGRN 991

Query: 208  RAACSYMPTRYGFAPGKWELDTSVKN 285
            +     M  R GFA  +WEL +   N
Sbjct: 992  QCLGLLMILRDGFANTRWELLSEASN 1017


>tr|Q0UPY9|Q0UPY9_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_06175 PE=4 SV=2
          Length = 574

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 10/58 (17%)
 Frame = +3

Query: 18  INERGKNIG----------LQFVVDRSGLTVARGARQSWKITRSGAERYPGQFASQTG 161
           I+E G+++G             ++D   L   R  R+SWK   +G E YPG   +  G
Sbjct: 92  IDEEGRDVGQNVRMAAKELTSLIMDEERLRAERADRKSWKSRVTGIEEYPGHQGAHNG 149


>tr|B6KCW3|B6KCW3_TOXGO Putative uncharacterized protein
           OS=Toxoplasma gondii ME49 GN=TGME49_070080 PE=4 SV=1
          Length = 878

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -3

Query: 268 PAPIFPGQTHILWACKSMRLLFHYQRPSPHCYLPQRPVCEANCPGYLSAPDRVIFQLCLA 89
           P   FP      +A +   LLF +QR S     PQRP+C+A     L +P  + F   L 
Sbjct: 9   PCAAFPA-----FARRKTILLFGWQRRSASSSAPQRPLCQA----ALRSP-HLAFAASLH 58

Query: 88  PLA-TVSPLRSTT 53
           PL+  V PLRS++
Sbjct: 59  PLSGVVFPLRSSS 71