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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914246
Clone id YMU001_000056_G02
Library
Length 269
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAACTAAATATCTTCAGCACAGTGATGATGAATTGAGAGCATTTGATACATAATTGGAGC
CCCATGAGGCACCAAACAAGAAGGGGTAAAAGGAACCATGGGCTCAGCTGCACCTGGCAT
GATAGGGATAGCAGATCATGTAGAATACAAGCCAATCAGACCCCAAGTTCCTGTGGCCTG
ATCCATTCACCCCAATAATAAGCTCAGAAGAGCTGACAAGGCAATACTTGCTGGAAGAAA
TTGGGAGAGCCCATGCACCCACAGTCGTG
■■Homology search results ■■ -
sp_hit_id Q2NQ98
Definition sp|Q2NQ98|KUP_SODGM Low affinity potassium transport system protein kup OS=Sodalis glossinidius (strain morsitans)
Align length 41
Score (bit) 32.3
E-value 0.76
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914246|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G02.
         (269 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2NQ98|KUP_SODGM Low affinity potassium transport system prot...    32   0.76 
sp|Q9Z1W4|GDF11_MOUSE Growth/differentiation factor 11 OS=Mus mu...    31   1.7  
sp|O95390|GDF11_HUMAN Growth/differentiation factor 11 OS=Homo s...    31   1.7  
sp|Q9Z217|GDF11_RAT Growth/differentiation factor 11 (Fragment) ...    31   2.2  
sp|Q5E8W6|THIG_VIBF1 Thiazole biosynthesis protein thiG OS=Vibri...    30   3.8  
sp|Q9KVS4|THIG_VIBCH Thiazole biosynthesis protein thiG OS=Vibri...    30   3.8  
sp|A5F4E2|THIG_VIBC3 Thiazole biosynthesis protein thiG OS=Vibri...    30   3.8  
sp|Q8DMP6|THIG_THEEB Thiazole biosynthesis protein thiG OS=Therm...    29   6.4  
sp|A7XYH5|SOBP_CHICK Sine oculis-binding protein homolog OS=Gall...    29   6.4  
sp|P09564|CD7_HUMAN T-cell antigen CD7 OS=Homo sapiens GN=CD7 PE...    29   6.4  
sp|Q6LVX7|THIG_PHOPR Thiazole biosynthesis protein thiG OS=Photo...    29   8.4  
sp|Q9D9J7|IZUM1_MOUSE Izumo sperm-egg fusion protein 1 OS=Mus mu...    29   8.4  
sp|P36401|E13H_TOBAC Glucan endo-1,3-beta-glucosidase, acidic is...    29   8.4  

>sp|Q2NQ98|KUP_SODGM Low affinity potassium transport system protein
           kup OS=Sodalis glossinidius (strain morsitans) GN=kup
           PE=3 SV=1
          Length = 622

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 18/41 (43%), Positives = 21/41 (51%)
 Frame = -1

Query: 125 LSCQVQLSPWFLLPLLVWCLMGLQLCIKCSQFIITVLKIFS 3
           LSC V    W L  L+V  L+   LC+  S F    LKIFS
Sbjct: 381 LSCTVARKNWHLNLLIVSVLLLALLCLDVSMFAANALKIFS 421


>sp|Q9Z1W4|GDF11_MOUSE Growth/differentiation factor 11 OS=Mus
           musculus GN=Gdf11 PE=2 SV=1
          Length = 405

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 46  IHNWSPMR--HQTRRGKRNHGLSCTWHDRDSRSCR 144
           +H +  +R    T+R +RN GL C  H  +SR CR
Sbjct: 279 LHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCR 313


>sp|O95390|GDF11_HUMAN Growth/differentiation factor 11 OS=Homo
           sapiens GN=GDF11 PE=2 SV=1
          Length = 407

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 46  IHNWSPMR--HQTRRGKRNHGLSCTWHDRDSRSCR 144
           +H +  +R    T+R +RN GL C  H  +SR CR
Sbjct: 281 LHPFMELRVLENTKRSRRNLGLDCDEHSSESRCCR 315


>sp|Q9Z217|GDF11_RAT Growth/differentiation factor 11 (Fragment)
           OS=Rattus norvegicus GN=Gdf11 PE=2 SV=1
          Length = 345

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +1

Query: 76  TRRGKRNHGLSCTWHDRDSRSCR 144
           T+R +RN GL C  H  +SR CR
Sbjct: 237 TKRSRRNLGLDCDEHSSESRCCR 259


>sp|Q5E8W6|THIG_VIBF1 Thiazole biosynthesis protein thiG OS=Vibrio
           fischeri (strain ATCC 700601 / ES114) GN=thiG PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = +3

Query: 159 DPKFLWPDPFTPIISSEELTRQ 224
           DPK+L PDP   + ++EEL +Q
Sbjct: 104 DPKYLMPDPIETLTAAEELVKQ 125


>sp|Q9KVS4|THIG_VIBCH Thiazole biosynthesis protein thiG OS=Vibrio
           cholerae GN=thiG PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 159 DPKFLWPDPFTPIISSEELTRQ 224
           DPK+L PDP   ++++E+L +Q
Sbjct: 101 DPKYLMPDPIETLLAAEQLVKQ 122


>sp|A5F4E2|THIG_VIBC3 Thiazole biosynthesis protein thiG OS=Vibrio
           cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 /
           O395) GN=thiG PE=3 SV=1
          Length = 256

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 159 DPKFLWPDPFTPIISSEELTRQ 224
           DPK+L PDP   ++++E+L +Q
Sbjct: 101 DPKYLMPDPIETLLAAEQLVKQ 122


>sp|Q8DMP6|THIG_THEEB Thiazole biosynthesis protein thiG
           OS=Thermosynechococcus elongatus (strain BP-1) GN=thiG
           PE=3 SV=1
          Length = 277

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 159 DPKFLWPDPFTPIISSEELTRQ 224
           DPK+L PDPF  + ++E+L ++
Sbjct: 122 DPKYLLPDPFGTLAAAEQLVKE 143


>sp|A7XYH5|SOBP_CHICK Sine oculis-binding protein homolog OS=Gallus
           gallus GN=SOBP PE=2 SV=1
          Length = 873

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 126 PIMPGAAEPMVPFTPSCLVPHGAPIMYQMLS 34
           P  PGA  P +PF P  ++P+G   M QM++
Sbjct: 478 PPPPGAPLPSLPFPPVSMMPNGPMPMPQMMN 508


>sp|P09564|CD7_HUMAN T-cell antigen CD7 OS=Homo sapiens GN=CD7 PE=1
           SV=1
          Length = 240

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 109 CTWHDRDSRSCRIQANQTPSSCGLIHSP 192
           C+W D++S +C +  + + S C  + SP
Sbjct: 209 CSWRDKNSAACVVYEDMSHSRCNTLSSP 236
tr_hit_id Q8FHY4
Definition tr|Q8FHY4|Q8FHY4_ECOL6 Putative uncharacterized protein OS=Escherichia coli O6
Align length 47
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914246|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G02.
         (269 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8FHY4|Q8FHY4_ECOL6 Putative uncharacterized protein OS=Esche...    35   1.4  
tr|B8JVV4|B8JVV4_ECOLX Putative uncharacterized protein OS=Esche...    35   1.4  
tr|B7UQB8|B7UQB8_ECO27 Predicted dehydrogenase OS=Escherichia co...    35   1.4  
tr|B2GB71|B2GB71_LACF3 Putative uncharacterized protein OS=Lacto...    34   4.1  

>tr|Q8FHY4|Q8FHY4_ECOL6 Putative uncharacterized protein
           OS=Escherichia coli O6 GN=c1690 PE=4 SV=1
          Length = 338

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -1

Query: 179 RPQELGV*LACILHDLLSLSCQVQLSPWFLLPLLVWCLMGLQLCIKC 39
           +PQ+L V L  +LH  L LS ++   PW LL L+     GL+L  KC
Sbjct: 237 QPQQLSVMLDALLHQQLGLSYRIAAVPWSLLSLVA---RGLELYGKC 280


>tr|B8JVV4|B8JVV4_ECOLX Putative uncharacterized protein
           OS=Escherichia coli PE=4 SV=1
          Length = 338

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -1

Query: 179 RPQELGV*LACILHDLLSLSCQVQLSPWFLLPLLVWCLMGLQLCIKC 39
           +PQ+L V L  +LH  L LS ++   PW LL L+     GL+L  KC
Sbjct: 237 QPQQLSVMLDALLHQQLGLSYRIAAVPWSLLSLVA---RGLELYGKC 280


>tr|B7UQB8|B7UQB8_ECO27 Predicted dehydrogenase OS=Escherichia coli
           O127:H6 str. E2348/69 GN=E2348_C_1353 PE=4 SV=1
          Length = 338

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 20/47 (42%), Positives = 27/47 (57%)
 Frame = -1

Query: 179 RPQELGV*LACILHDLLSLSCQVQLSPWFLLPLLVWCLMGLQLCIKC 39
           +PQ+L V L  +LH  L LS ++   PW LL L+     GL+L  KC
Sbjct: 237 QPQQLSVMLDALLHQQLGLSYRIAAVPWSLLSLVA---RGLELYGKC 280


>tr|B2GB71|B2GB71_LACF3 Putative uncharacterized protein
           OS=Lactobacillus fermentum (strain IFO 3956 / LMG 18251)
           GN=LAF_0567 PE=4 SV=1
          Length = 128

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = -1

Query: 182 IRPQELGV*LACILHDLLSLSCQVQLS-PWFLLPLLVWCLMGLQLCI 45
           IR Q+  V L  +   LL +SC + L+  WF  P+++W L+G+ L I
Sbjct: 40  IRRQKKPVHLLWVWTTLLIISCLINLTFYWFAYPVIIWMLIGIGLVI 86