NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914247
Clone id YMU001_000056_G03
Library
Length 478
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCCAGATCGCAGTTTGAATGTCCAGCTGCCCTGCTTTCAACTAAAAGAGCCGGGCCAAC
AAATCTATCTCTAGAGCTTATCCCACTGCTCCAGCCGCTACTCATTCAATGTCCTCTTCA
GGTGCAACAACAGCGGCCCCTTCATGCTTGGCTGCTACTTTCTTTGCACAAGCTGCAGCC
CAAGAAAATACATTCCTTACACCTCATGAACAATCGCTCCACGAGGGGGCACTCCACTCT
TCAAAAATCCTCCAAATTCCCTCTACAGGAAAAACCACGGATTCTTTCCCCAGTAGTGAT
GTCCCAGACCAAGCCGCAATTCTTGCTGCAGAAGACGACTCTGCTGGCGTGGGTGTTACT
ACACCTGTAGATGCTGCAACAGTAACAACCTTTCCTGCTGCCATCAAAAGTGATGGCGCC
CATGCTGCTGCTGACAATGGTACAGCCCTCAAATCCCCAACCTTGCTGGAAGTGATCA
■■Homology search results ■■ -
sp_hit_id Q824X8
Definition sp|Q824X8|Y010_CHLCV UPF0176 protein CCA_00010 OS=Chlamydophila caviae
Align length 83
Score (bit) 30.4
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914247|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G03.
         (478 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q824X8|Y010_CHLCV UPF0176 protein CCA_00010 OS=Chlamydophila ...    30   4.3  
sp|Q5SS80|DHR13_MOUSE Dehydrogenase/reductase SDR family member ...    30   5.5  
sp|Q5L7A0|Y010_CHLAB UPF0176 protein CAB010 OS=Chlamydophila abo...    30   5.6  
sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens GN=...    30   5.6  
sp|P60319|KEN_DROYA Probable transcription factor Ken (Fragment)...    30   7.4  
sp|O77459|KEN_DROME Transcription factor Ken OS=Drosophila melan...    30   7.4  
sp|Q61826|MADCA_MOUSE Mucosal addressin cell adhesion molecule 1...    29   9.4  

>sp|Q824X8|Y010_CHLCV UPF0176 protein CCA_00010 OS=Chlamydophila
           caviae GN=CCA_00010 PE=3 SV=1
          Length = 331

 Score = 30.4 bits (67), Expect = 4.3
 Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 16/83 (19%)
 Frame = -2

Query: 399 SRKGCYCCSIYRCSNTHASRVVFCSKNCGLVWDITTG---------ERIRGFS-CRGNLE 250
           S  G  C + Y C+NT  + +  C ++C    D T G          RIR FS  RGN +
Sbjct: 247 SHCGVGCDTYYNCANTDCNNLFICCEDC---IDSTKGCCSQECSQAPRIRAFSPSRGN-K 302

Query: 249 DF*R------VECPLVERLFMRC 199
            F R      VEC  VE+    C
Sbjct: 303 PFRRMHLCEQVECEQVEKKASSC 325


>sp|Q5SS80|DHR13_MOUSE Dehydrogenase/reductase SDR family member 13
           OS=Mus musculus GN=Dhrs13 PE=1 SV=1
          Length = 376

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
 Frame = +3

Query: 78  LSHCS-SRYSFNVLFRCNNSGPFMLGCYFL--CTSCSPRKYIPYTS 206
           +S C  +R +FN+L R N+ GPF+L    L    SC+P + +  +S
Sbjct: 125 ISSCGRTRETFNLLLRVNHVGPFLLTHLLLPRLRSCAPSRVVIVSS 170


>sp|Q5L7A0|Y010_CHLAB UPF0176 protein CAB010 OS=Chlamydophila
           abortus GN=CAB010 PE=3 SV=1
          Length = 326

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 7/49 (14%)
 Frame = -2

Query: 381 CCSIYRCSNTHASRVVFCSKNC------GLVWDITTGERIRGFS-CRGN 256
           C + Y C+NT  + +  C K C          + +   RIR F+ CRGN
Sbjct: 253 CDTYYNCANTDCNNLFICCKECIHSTKGCCSQECSQAPRIRSFAPCRGN 301


>sp|Q17RH7|TPRXL_HUMAN Putative protein TPRXL OS=Homo sapiens
           GN=TPRXL PE=2 SV=1
          Length = 257

 Score = 30.0 bits (66), Expect = 5.6
 Identities = 21/90 (23%), Positives = 39/90 (43%)
 Frame = +1

Query: 49  SRANKSISRAYPTAPAATHSMSSSGATTAAPSCLXXXXXXXXXXXENTFLTPHEQSLHEG 228
           S ++ S S + P++ +++ S SSS  ++++PS              ++  +P   S    
Sbjct: 142 SSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSPS 201

Query: 229 ALHSSKILQIPSTGKTTDSFPSSDVPDQAA 318
              SS      ST   + S PSS  P  ++
Sbjct: 202 PRSSSPSSSSSSTSSPSTSSPSSSSPSSSS 231


>sp|P60319|KEN_DROYA Probable transcription factor Ken (Fragment)
           OS=Drosophila yakuba GN=ken PE=2 SV=1
          Length = 205

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
 Frame = -2

Query: 360 SNTHAS-----RVVFCSKNCGLVWDITTGERI----RGFSCR 262
           SNTHAS     R  +C K  G+ W++ T  R+    + F+CR
Sbjct: 96  SNTHASSVREYRCEYCGKQFGMSWNLKTHLRVHTGEKPFACR 137


>sp|O77459|KEN_DROME Transcription factor Ken OS=Drosophila
           melanogaster GN=ken PE=1 SV=1
          Length = 601

 Score = 29.6 bits (65), Expect = 7.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 9/42 (21%)
 Frame = -2

Query: 360 SNTHAS-----RVVFCSKNCGLVWDITTGERI----RGFSCR 262
           SNTHAS     R  +C K  G+ W++ T  R+    + F+CR
Sbjct: 490 SNTHASSVREYRCEYCGKQFGMSWNLKTHLRVHTGEKPFACR 531


>sp|Q61826|MADCA_MOUSE Mucosal addressin cell adhesion molecule 1
           OS=Mus musculus GN=Madcam1 PE=1 SV=2
          Length = 405

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = -3

Query: 335 SSAARIAAWSGTSLLGKESVVFPVEGIWRIFEEWSAPSWSDCS 207
           +S++ +  W G+ +LG  ++VF    +W+ +     P  S C+
Sbjct: 361 NSSSTVVLWIGSLVLGLLALVFLAYRLWKCYRPGPRPDTSSCT 403
tr_hit_id A8PU27
Definition tr|A8PU27|A8PU27_BRUMA Zinc finger, C2H2 type family protein OS=Brugia malayi
Align length 111
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914247|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G03.
         (478 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8PU27|A8PU27_BRUMA Zinc finger, C2H2 type family protein OS=...    35   1.9  
tr|Q5TK28|Q5TK28_PHYPA Putative auxin transport protein OS=Physc...    33   7.0  
tr|Q0JF31|Q0JF31_ORYSJ Os04g0168300 protein (Fragment) OS=Oryza ...    33   7.0  
tr|A9RI03|A9RI03_PHYPA PINA AtPIN5/PIN6-like auxin efflux carrie...    33   7.0  
tr|A6DRG3|A6DRG3_9BACT Serine/threonine protein kinase OS=Lentis...    33   9.2  

>tr|A8PU27|A8PU27_BRUMA Zinc finger, C2H2 type family protein
           OS=Brugia malayi GN=Bm1_34390 PE=4 SV=1
          Length = 498

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 28/111 (25%), Positives = 43/111 (38%), Gaps = 16/111 (14%)
 Frame = -2

Query: 453 FEGCTIVSSSMGAITFDGSRKG---CYCCSIYRCSNTHASRVVFCS-----------KNC 316
           + GCT+++++           G    Y C +  C  T   R  FCS           KNC
Sbjct: 239 YPGCTVIATNYNEYITHRKTHGQPLIYECRVPGCGRTFNHRTSFCSHIQTHQPKHQCKNC 298

Query: 315 GLVWDITTGERIRGFSCRGNLEDF*RVEC--PLVERLFMRCKECIFLGCSL 169
           G ++            CR N+       C  PL ER +    EC++ GC++
Sbjct: 299 GKLF------------CRNNILQKHNKHCGTPLHERSY----ECVYRGCTM 333


>tr|Q5TK28|Q5TK28_PHYPA Putative auxin transport protein
           OS=Physcomitrella patens GN=pin PE=4 SV=1
          Length = 713

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 26/84 (30%), Positives = 36/84 (42%)
 Frame = +1

Query: 52  RANKSISRAYPTAPAATHSMSSSGATTAAPSCLXXXXXXXXXXXENTFLTPHEQSLHEGA 231
           +  +S+S       +A HSM SS A T  PS L            N  LTP + S ++G 
Sbjct: 205 KVRRSVSSRSQGMHSAHHSMPSSKALTPRPSNLTGAEIYSMHSSVN--LTPRDSSFNQGE 262

Query: 232 LHSSKILQIPSTGKTTDSFPSSDV 303
            HS    + P       +F +SDV
Sbjct: 263 FHSMMSQRSP---HRQSNFDTSDV 283


>tr|Q0JF31|Q0JF31_ORYSJ Os04g0168300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os04g0168300 PE=4 SV=1
          Length = 71

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 17/55 (30%), Positives = 23/55 (41%)
 Frame = -2

Query: 468 QQGWGFEGCTIVSSSMGAITFDGSRKGCYCCSIYRCSNTHASRVVFCSKNCGLVW 304
           +QGWG    T+V S + A    G   GC C  +Y         ++ C  N  L W
Sbjct: 4   RQGWGRHDTTVVGSCIAAAVAVGIMLGCLCTFLY------PDGLLSCCSNAALHW 52


>tr|A9RI03|A9RI03_PHYPA PINA AtPIN5/PIN6-like auxin efflux carrier
           protein OS=Physcomitrella patens subsp. patens GN=PINA
           PE=4 SV=1
          Length = 713

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 26/84 (30%), Positives = 36/84 (42%)
 Frame = +1

Query: 52  RANKSISRAYPTAPAATHSMSSSGATTAAPSCLXXXXXXXXXXXENTFLTPHEQSLHEGA 231
           +  +S+S       +A HSM SS A T  PS L            N  LTP + S ++G 
Sbjct: 205 KVRRSVSSRSQGMHSAHHSMPSSKALTPRPSNLTGAEIYSMHSSVN--LTPRDSSFNQGE 262

Query: 232 LHSSKILQIPSTGKTTDSFPSSDV 303
            HS    + P       +F +SDV
Sbjct: 263 FHSMMSQRSP---HRQSNFDTSDV 283


>tr|A6DRG3|A6DRG3_9BACT Serine/threonine protein kinase
           OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_15192 PE=4
           SV=1
          Length = 1662

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 26/107 (24%), Positives = 43/107 (40%)
 Frame = -2

Query: 471 FQQGWGFEGCTIVSSSMGAITFDGSRKGCYCCSIYRCSNTHASRVVFCSKNCGLVWDITT 292
           +   W F+ C    +++G  T D   K   C  ++  SN  ASR V   K     W++  
Sbjct: 598 YSSKWEFKDCLFYQTNLGIKTTDYGYKYQDC--VFVESNFSASRTVSSEKQYQDQWNV-- 653

Query: 291 GERIRGFSCRGNLEDF*RVECPLVERLFMRCKECIFLGCSLCKESSS 151
                       +++    +C L  +     K+C  L C+L K SS+
Sbjct: 654 ------------VDNCIFYKCVLSPQFLFSTKDCSLLDCTLNKASSA 688