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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914249
Clone id YMU001_000056_G05
Library
Length 578
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGCACTCACACGGTTCTCATACTCCCTCCATCTCCCTTGCTTAAACGGTCGCATTGCCAG
CTTCTCCCTCTTCTCATCAGTACACCGTAAAGCTTTGCTCCGCCTCAGCCACCGAGCTTC
CTTCTCTCTATCCTTCTGCAGCAATTCTTCAAATCCCACTATACAAGCTTGTTCTACTTG
TGTCTTGAGCTCGCTGCAAGCAGCACTTGCTGGCTGAGTTGCGTGCGAGGGGCGTAAGCG
CGCGGGACCCAGCTCAGATTTTCATATGTTTTCCGTTCTGCGTATGCGTGTGTGTATTTA
GGGCGTATCTTCTTGACGCAGGGCTCCCTCTATATTCTATTATCCCCTCTTCTGTGTGTG
TAAAGAAAGAGCAGATCCCTCACTCTGTCTCTGTTTCTACCTCTAGGCCATGGATACCTC
AGGTTTTGTGACATCTCTCTTAACCTCGCTGATCATCTTTGTGGTGCTTTATTTGCTGCA
CGCATGGCTGTCACGGAAACCAGGCAATGCAGTGGTGTACTACCCCAGCAAGTTGTTGAA
GAACATACCGCCTCCGACAAACCGAGGCATCTTCTCAT
■■Homology search results ■■ -
sp_hit_id Q3A734
Definition sp|Q3A734|UVRC_PELCD UvrABC system protein C OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Align length 61
Score (bit) 33.1
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914249|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G05.
         (578 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3A734|UVRC_PELCD UvrABC system protein C OS=Pelobacter carbi...    33   1.0  
sp|Q5ABP8|ROT1_CANAL Protein ROT1 OS=Candida albicans GN=ROT1 PE...    32   3.0  
sp|Q52KB6|C2CD3_MOUSE C2 domain-containing protein 3 OS=Mus musc...    32   3.0  
sp|P40416|ATM1_YEAST Iron-sulfur clusters transporter ATM1, mito...    31   5.1  
sp|Q9VYY2|SPCS2_DROME Signal peptidase complex subunit 2 OS=Dros...    30   6.7  
sp|A0KNE3|IF2_AERHH Translation initiation factor IF-2 OS=Aeromo...    30   6.7  
sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus lae...    30   8.7  

>sp|Q3A734|UVRC_PELCD UvrABC system protein C OS=Pelobacter
           carbinolicus (strain DSM 2380 / Gra Bd 1) GN=uvrC PE=3
           SV=1
          Length = 612

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = -1

Query: 386 RVRDLLFLYTHRRGDNRI*REPCVKKIRPKYTHAYAERKTYENLSWVPRAYAPRTQLSQQ 207
           RV D+  + T    +  I     +KK RP+Y     + KTY +L   PR   P  QL ++
Sbjct: 58  RVHDIETIVTDTEKEALILENTLIKKYRPRYNINLRDDKTYLSLRLDPRQEFPMLQLVRR 117

Query: 206 V 204
           V
Sbjct: 118 V 118


>sp|Q5ABP8|ROT1_CANAL Protein ROT1 OS=Candida albicans GN=ROT1 PE=3
           SV=1
          Length = 260

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
 Frame = -2

Query: 379 GICSFFT---HTEEGIIEYRGSPASRRYALNTHTHTQNGKHMKI*AGSRALTPLA 224
           GIC  FT   H EE +   + +P +   A+ + T+ Q+GK+  +  GS  LTP+A
Sbjct: 63  GICYSFTKDGHYEEALYRVKPNPKNHSCAVASVTY-QHGKYELLSNGSLVLTPIA 116


>sp|Q52KB6|C2CD3_MOUSE C2 domain-containing protein 3 OS=Mus musculus
            GN=C2cd3 PE=2 SV=2
          Length = 2323

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +3

Query: 333  YSIIPSSVCVKKEQIPHSVSVSTSRPWIP 419
            +  IP  +  K+E++P +V++ST R W+P
Sbjct: 1373 FESIPKDLVKKEEEVPATVTISTPRLWLP 1401


>sp|P40416|ATM1_YEAST Iron-sulfur clusters transporter ATM1,
           mitochondrial OS=Saccharomyces cerevisiae GN=ATM1 PE=1
           SV=2
          Length = 690

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 491 TAMRAANKAPQR*SARLREMSQNLRYPWPRGRNRDRVRDLLFL 363
           T ++  +KAP    + L+ +    RY WP+G N+ R+R L+ L
Sbjct: 75  TQVKKTSKAPTL--SELKILKDLFRYIWPKGNNKVRIRVLIAL 115


>sp|Q9VYY2|SPCS2_DROME Signal peptidase complex subunit 2
           OS=Drosophila melanogaster GN=Spase25 PE=2 SV=1
          Length = 199

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 153 FEELLQKDREKEARWLRRSKALRCTDEKREKLAMRPFKQGRWREYENRVS 4
           F   LQKD+E+E  W   S   +  D+    L++R  K G+ RE  +  S
Sbjct: 110 FAVALQKDKERERLWEASSDMRKYDDKYLLTLSVRDTKNGKRREQSSNKS 159


>sp|A0KNE3|IF2_AERHH Translation initiation factor IF-2 OS=Aeromonas
           hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB
           9240) GN=infB PE=3 SV=1
          Length = 897

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 26/73 (35%), Positives = 32/73 (43%), Gaps = 15/73 (20%)
 Frame = -3

Query: 243 ARLRPSHATQPASAACS---------------ELKTQVEQACIVGFEELLQKDREKEARW 109
           A+ +   A QPA AA S               ELK Q EQA +   EEL  K  E EAR 
Sbjct: 159 AQQKARQAQQPAKAAGSTAQQEAEKMAKREAEELKRQQEQAALTKAEELAAKKAE-EARV 217

Query: 108 LRRSKALRCTDEK 70
           +    A R  +E+
Sbjct: 218 MAEQNAARWAEEE 230


>sp|Q0IH40|DNLZ_XENLA DNL-type zinc finger protein OS=Xenopus laevis
           GN=dnlz PE=2 SV=1
          Length = 188

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +3

Query: 54  LPASPSSHQYTVKLCSASATELPSLYPSAAILQIPLYKLVLLVS*ARCKQH 206
           LPA+PSSH   +  C   AT       S  I ++  +K V++V    C+ H
Sbjct: 74  LPAAPSSHYRLIYTCKVCATR-----SSKTISKVAYHKGVVIVRCPGCENH 119
tr_hit_id Q6ZLQ0
Definition tr|Q6ZLQ0|Q6ZLQ0_ORYSJ Os07g0150100 protein OS=Oryza sativa subsp. japonica
Align length 53
Score (bit) 71.2
E-value 4.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914249|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G05.
         (578 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6ZLQ0|Q6ZLQ0_ORYSJ Os07g0150100 protein OS=Oryza sativa subs...    71   4e-11
tr|A3BGL5|A3BGL5_ORYSJ Putative uncharacterized protein OS=Oryza...    71   4e-11
tr|A2YI72|A2YI72_ORYSI Putative uncharacterized protein OS=Oryza...    71   4e-11
tr|A7Q192|A7Q192_VITVI Chromosome chr10 scaffold_43, whole genom...    70   8e-11
tr|A5C7W9|A5C7W9_VITVI Putative uncharacterized protein OS=Vitis...    70   8e-11
tr|B0FSL2|B0FSL2_MAIZE Early responsive to dehydration protein O...    69   2e-10
tr|A9SW37|A9SW37_PHYPA Predicted protein OS=Physcomitrella paten...    63   1e-08
tr|A8IXK5|A8IXK5_BRACM Early-responsive to dehydration 4 OS=Bras...    60   9e-08
tr|Q9C8G5|Q9C8G5_ARATH Putative uncharacterized protein T4K22.4 ...    60   1e-07
tr|Q94B69|Q94B69_ARATH Putative uncharacterized protein T4K22.4 ...    60   1e-07
tr|A9TEC4|A9TEC4_PHYPA Predicted protein OS=Physcomitrella paten...    60   1e-07
tr|A9LIW2|A9LIW2_BRAJU ERD4 protein OS=Brassica juncea GN=ERD4 P...    59   1e-07
tr|A9S3X9|A9S3X9_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A9S768|A9S768_PHYPA Predicted protein OS=Physcomitrella paten...    51   5e-05
tr|A9SJW4|A9SJW4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.12 
tr|A9IDN0|A9IDN0_BORPD Short-chain fatty acids transporter OS=Bo...    37   1.0  
tr|A8A9Q4|A8A9Q4_IGNH4 Putative uncharacterized protein OS=Ignic...    35   2.3  
tr|A8JNI2|A8JNI2_DROME CG7971, isoform E OS=Drosophila melanogas...    28   4.2  
tr|A9RIT4|A9RIT4_PHYPA Predicted protein OS=Physcomitrella paten...    34   5.1  
tr|Q9W0B0|Q9W0B0_DROME CG7971, isoform C OS=Drosophila melanogas...    27   5.6  
tr|Q960C4|Q960C4_DROME SD07741p OS=Drosophila melanogaster GN=CG...    27   5.6  
tr|Q7YZ99|Q7YZ99_DROME CG7971, isoform A OS=Drosophila melanogas...    27   5.6  
tr|Q82EB7|Q82EB7_STRAW Putative large ATP-binding protein OS=Str...    34   6.7  
tr|Q2KZV7|Q2KZV7_BORA1 Short-chain fatty acids transporter OS=Bo...    34   6.7  
tr|A6KZN8|A6KZN8_BACV8 Excinuclease ABC subunit C OS=Bacteroides...    34   6.7  
tr|A8TWJ6|A8TWJ6_9PROT Putative uncharacterized protein OS=alpha...    33   8.7  
tr|Q5B9A0|Q5B9A0_EMENI Putative uncharacterized protein OS=Emeri...    33   8.7  
tr|Q97UG4|Q97UG4_SULSO Maltose ABC transporter, permease OS=Sulf...    33   8.7  

>tr|Q6ZLQ0|Q6ZLQ0_ORYSJ Os07g0150100 protein OS=Oryza sativa subsp.
           japonica GN=OJ1027_G06.20 PE=4 SV=1
          Length = 731

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 34/53 (64%), Positives = 40/53 (75%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPPPTNRG 568
           MDT+ FVTSLLTS +IFVVL L+  WLS +PGNA VYYPS LL+ + P   RG
Sbjct: 1   MDTASFVTSLLTSFVIFVVLVLVFTWLSSRPGNAPVYYPSVLLRGLDPWEGRG 53


>tr|A3BGL5|A3BGL5_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_022187 PE=4 SV=1
          Length = 1280

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 34/53 (64%), Positives = 40/53 (75%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPPPTNRG 568
           MDT+ FVTSLLTS +IFVVL L+  WLS +PGNA VYYPS LL+ + P   RG
Sbjct: 1   MDTASFVTSLLTSFVIFVVLVLVFTWLSSRPGNAPVYYPSVLLRGLDPWEGRG 53


>tr|A2YI72|A2YI72_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_24908 PE=4 SV=1
          Length = 731

 Score = 71.2 bits (173), Expect = 4e-11
 Identities = 34/53 (64%), Positives = 40/53 (75%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPPPTNRG 568
           MDT+ FVTSLLTS +IFVVL L+  WLS +PGNA VYYPS LL+ + P   RG
Sbjct: 1   MDTASFVTSLLTSFVIFVVLVLVFTWLSSRPGNAPVYYPSVLLRGLDPWEGRG 53


>tr|A7Q192|A7Q192_VITVI Chromosome chr10 scaffold_43, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00028359001
           PE=4 SV=1
          Length = 282

 Score = 70.1 bits (170), Expect = 8e-11
 Identities = 32/48 (66%), Positives = 40/48 (83%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPP 553
           MD S F+TSL TS +IFVVL LL AWLSRKPGN+V+YYP+++LK + P
Sbjct: 1   MDFSSFLTSLGTSFLIFVVLMLLFAWLSRKPGNSVIYYPNRILKGMDP 48


>tr|A5C7W9|A5C7W9_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037471 PE=4 SV=1
          Length = 676

 Score = 70.1 bits (170), Expect = 8e-11
 Identities = 32/48 (66%), Positives = 40/48 (83%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPP 553
           MD S F+TSL TS +IFVVL LL AWLSRKPGN+V+YYP+++LK + P
Sbjct: 1   MDFSSFLTSLGTSFLIFVVLMLLFAWLSRKPGNSVIYYPNRILKGMDP 48


>tr|B0FSL2|B0FSL2_MAIZE Early responsive to dehydration protein
           OS=Zea mays GN=ERD4 PE=2 SV=1
          Length = 732

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 31/53 (58%), Positives = 39/53 (73%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPPPTNRG 568
           MD + F+TS+LTS +IFV L LL  WLSR+PGNA VYYP+ LL+ + P   RG
Sbjct: 1   MDLTSFITSVLTSFVIFVALVLLFTWLSRRPGNAPVYYPNLLLRGLDPWAGRG 53


>tr|A9SW37|A9SW37_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84744 PE=4 SV=1
          Length = 734

 Score = 62.8 bits (151), Expect = 1e-08
 Identities = 28/47 (59%), Positives = 40/47 (85%)
 Frame = +2

Query: 419 SGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPPPT 559
           S F+TSL+TSLI+F+VL+L++A LSR+PGNAV+YYP ++L+    PT
Sbjct: 5   SSFITSLVTSLIVFLVLWLVYAILSRRPGNAVIYYPLRVLRGEDGPT 51


>tr|A8IXK5|A8IXK5_BRACM Early-responsive to dehydration 4
           OS=Brassica campestris PE=2 SV=1
          Length = 723

 Score = 60.1 bits (144), Expect = 9e-08
 Identities = 27/48 (56%), Positives = 35/48 (72%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPP 553
           M+   F+ SL TS +IFVVL LL  WLSR+PGN  VYYP+++LK + P
Sbjct: 1   MEFESFLVSLGTSAVIFVVLMLLFTWLSRRPGNVSVYYPNRILKGMDP 48


>tr|Q9C8G5|Q9C8G5_ARATH Putative uncharacterized protein T4K22.4
           (Putative uncharacterized protein At1g30360)
           OS=Arabidopsis thaliana GN=At1g30360 PE=2 SV=1
          Length = 724

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPP 553
           M+   F+ SL TS +IFV+L LL  WLSRK GNA +YYP+++LK + P
Sbjct: 1   MEFGSFLVSLGTSFVIFVILMLLFTWLSRKSGNAPIYYPNRILKGLEP 48


>tr|Q94B69|Q94B69_ARATH Putative uncharacterized protein T4K22.4
           (Fragment) OS=Arabidopsis thaliana GN=T4K22.4 PE=2 SV=1
          Length = 532

 Score = 59.7 bits (143), Expect = 1e-07
 Identities = 26/48 (54%), Positives = 35/48 (72%)
 Frame = +2

Query: 410 MDTSGFVTSLLTSLIIFVVLYLLHAWLSRKPGNAVVYYPSKLLKNIPP 553
           M+   F+ SL TS +IFV+L LL  WLSRK GNA +YYP+++LK + P
Sbjct: 1   MEFGSFLVSLGTSFVIFVILMLLFTWLSRKSGNAPIYYPNRILKGLEP 48