| BP914252 |
| Clone id |
YMU001_000056_G08 |
| Library |
YMU01 |
| Length |
446 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000056_G08. |
| Accession |
BP914252 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL1363Contig1 |
| Sequence |
ATGCAAAACCATTCACTTCAAATAACCTTCACAAGGACAAACCGCACTTTCACTCGCAAC
CACAACCAGTACGATCAAAAAGCCCTGCAAGAAGCCATAATCATCCCAAAACAAAGAACA
TCGGCATCTCGCAGCTTCAAGGCAACTCAGCAAAGGTAAAATACTCCTGGGATTCACAAC
AAAATGGAAATAAATGCATGGAATGCCTTCTCACCCCCCACGCTTCCAACATCAGCATCT
CGCAGCTTCAAGGCAACTCAGCAAAGGTAAAATACTCCTGGGATTCACAACAAAATGGAA
ATAAATGCATGGAATGCCTTCTCACCCCCCACGCCCGGAACCTCCCCTAGTTCGTGCAAC
TCTCTTGCAACCTTTTGGAGCCGGGCTGAGCTTACTGCATGGCATCTGACCACAATTCAA
TGTGGCCTCTTGCTTGAAGTCCATCT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
O14647 |
| Definition |
sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2 OS=Homo sapiens |
| Align length |
35 |
| Score (bit) |
32.3 |
| E-value |
0.93 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914252|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G08.
(446 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2... 32 0.93
sp|Q5ZIB2|FBF1_CHICK Fas-binding factor 1 homolog OS=Gallus gall... 31 2.7
sp|P71032|SSPP_BACSU Small, acid-soluble spore protein P OS=Baci... 30 3.5
sp|A7Z565|SSPP_BACA2 Small, acid-soluble spore protein P OS=Baci... 30 3.5
sp|Q5I0D6|NOSTN_RAT Nostrin OS=Rattus norvegicus GN=Nostrin PE=2... 30 3.5
sp|Q9QJ16|IE2_HHV6Z Immediate-early protein 2 OS=Human herpesvir... 30 3.5
sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcriptio... 30 4.6
sp|Q5UQJ9|YL397_MIMIV Uncharacterized protein L397 OS=Acanthamoe... 30 6.0
sp|Q5QJE6|TDIF2_HUMAN Deoxynucleotidyltransferase terminal-inter... 30 6.0
sp|Q54P47|NDRC_DICDI Probable serine/threonine-protein kinase nd... 30 6.0
sp|Q5ZKC1|EIF2A_CHICK Eukaryotic translation initiation factor 2... 30 6.0
sp|Q54CU4|COLA_DICDI Colossin-A OS=Dictyostelium discoideum GN=c... 30 6.0
sp|Q134R9|RPOC_RHOPS DNA-directed RNA polymerase subunit beta' O... 29 7.8
sp|Q12053|PKSL1_ASPPA Aflatoxin biosynthesis polyketide synthase... 29 7.8
sp|Q55BG3|CSBL2_DICDI Uncharacterized protein csb family protein... 29 7.8
>sp|O14647|CHD2_HUMAN Chromodomain-helicase-DNA-binding protein 2
OS=Homo sapiens GN=CHD2 PE=1 SV=2
Length = 1828
Score = 32.3 bits (72), Expect = 0.93
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 15 TSNNLHKDKPHFHSQPQPVRSKSPARSHNHPKTKN 119
TS+NLH KPH + P P ++NHP ++
Sbjct: 1597 TSHNLHPQKPHLPASHGPQMHGHPRDNYNHPNKRH 1631
>sp|Q5ZIB2|FBF1_CHICK Fas-binding factor 1 homolog OS=Gallus gallus
GN=FBF1 PE=2 SV=1
Length = 1132
Score = 30.8 bits (68), Expect = 2.7
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 12 FTSNNLHKDKPHFHSQPQPVRSKSPAR 92
F++ N + KP HS+P P S+SPAR
Sbjct: 337 FSAENSSEPKPDPHSKPPPAASQSPAR 363
>sp|P71032|SSPP_BACSU Small, acid-soluble spore protein P
OS=Bacillus subtilis GN=sspP PE=2 SV=1
Length = 48
Score = 30.4 bits (67), Expect = 3.5
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 15 TSNNLHKDKPHFHS--QPQPVRSKSPARSHNHPKTKN 119
TS ++HK+ P H+ QP+P+ ++ NH + K+
Sbjct: 6 TSKDMHKNAPKGHNPGQPEPLSGSKKVKNRNHTRQKH 42
>sp|A7Z565|SSPP_BACA2 Small, acid-soluble spore protein P
OS=Bacillus amyloliquefaciens (strain FZB42) GN=sspP
PE=2 SV=1
Length = 48
Score = 30.4 bits (67), Expect = 3.5
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = +3
Query: 15 TSNNLHKDKPHFHS--QPQPVRSKSPARSHNHPKTKN 119
TS ++HK+ P H+ QP+P+ ++ NH + K+
Sbjct: 6 TSKDMHKNAPKGHNPGQPEPLSGSKKVKNRNHTRQKH 42
>sp|Q5I0D6|NOSTN_RAT Nostrin OS=Rattus norvegicus GN=Nostrin PE=2
SV=1
Length = 502
Score = 30.4 bits (67), Expect = 3.5
Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 13/70 (18%)
Frame = +3
Query: 33 KDKPHFHS-----------QPQPVRSKSPARSHNHPKTKNIGISQLQGNS--AKVKYSWD 173
K+K H HS + + SK+PA N+P + G S QGN+ K Y++
Sbjct: 391 KEKEHSHSYVKISRPLLTKRLEKAESKAPAGEQNNPSSSRPGSSVSQGNNQLCKALYTFQ 450
Query: 174 SQQNGNKCME 203
++Q+ +E
Sbjct: 451 ARQDDELNLE 460
>sp|Q9QJ16|IE2_HHV6Z Immediate-early protein 2 OS=Human herpesvirus
6B (strain Z29) GN=U90/U86 PE=3 SV=1
Length = 1520
Score = 30.4 bits (67), Expect = 3.5
Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Frame = +3
Query: 9 PFTSNNLHKDKPHFHSQPQPVRSKSPARSHNHPKTKNIGISQLQGNSAKVKYSWDSQQNG 188
P T N K H + + SP RSH++P + GNS + +S NG
Sbjct: 647 PSTMNRNCASKKHSAGANKNLTDNSPIRSHSNPSSFTAFNKSNSGNS-----TMNSTSNG 701
Query: 189 NKCME----CLLTPHASNISISQLQGNSAK 266
++C + C T + S S NS K
Sbjct: 702 DECTDKKPNCSSTENKSETSNQTNGENSDK 731
>sp|Q10669|MED23_CAEEL Mediator of RNA polymerase II transcription
subunit 23 OS=Caenorhabditis elegans GN=sur-2 PE=1 SV=1
Length = 1587
Score = 30.0 bits (66), Expect = 4.6
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +3
Query: 30 HKDKPHFHSQPQPVRSKSPARSHNHPKTKNIGISQLQGNSAKVKYSWDSQQN 185
H PH P P+ + +P + P+ + + + QLQ + +Y QQ+
Sbjct: 1527 HPHLPHHQQMPAPMHTMNPMMQNMTPQQQYLYMQQLQQHQQHQQYMQQQQQH 1578
>sp|Q5UQJ9|YL397_MIMIV Uncharacterized protein L397 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_L397 PE=4 SV=1
Length = 585
Score = 29.6 bits (65), Expect = 6.0
Identities = 22/74 (29%), Positives = 35/74 (47%)
Frame = +3
Query: 36 DKPHFHSQPQPVRSKSPARSHNHPKTKNIGISQLQGNSAKVKYSWDSQQNGNKCMECLLT 215
D P + SQ KS +++P T N + ++ G+ A V S +S + N+C + T
Sbjct: 340 DVPKYQSQNTTASDKS---ENSYPSTVNNILDRIIGSLAPVGKSTNSNNSHNEC-KPKST 395
Query: 216 PHASNISISQLQGN 257
+ N SQL N
Sbjct: 396 TTSKNSDFSQLSNN 409
>sp|Q5QJE6|TDIF2_HUMAN Deoxynucleotidyltransferase
terminal-interacting protein 2 OS=Homo sapiens
GN=DNTTIP2 PE=1 SV=2
Length = 756
Score = 29.6 bits (65), Expect = 6.0
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 78 KSPARSHNHPKTKNIGISQLQGNSAKVKYSWDSQQNGNKCMECLLTPHASNISISQLQGN 257
KSP ++ + K + G S + S + S D GN EC + S + SQ + N
Sbjct: 380 KSPIKASDLTKFGDCGGSDDEEESTVISVSEDMNSEGNVDFECDTKLYTSAPNTSQGKDN 439
Query: 258 SAKVKYSWD-SQQNGN 302
S + S D SQQ+ N
Sbjct: 440 SVLLVLSSDESQQSEN 455
>sp|Q54P47|NDRC_DICDI Probable serine/threonine-protein kinase ndrC
OS=Dictyostelium discoideum GN=ndrC PE=3 SV=1
Length = 1335
Score = 29.6 bits (65), Expect = 6.0
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = +3
Query: 93 SHNHPKTKNIGISQLQGNSAKVKYSWDSQQNGNKCMECLLTPHASNISISQLQ 251
++N+ N I + GNS + +DS + N+ LL+P++S+ SI +Q
Sbjct: 1128 NNNNNNLHNNQIHEKNGNSGYNHFHFDSIEQQNQYQLSLLSPNSSDKSIGMIQ 1180
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q22A56 |
| Definition |
tr|Q22A56|Q22A56_TETTH Cation channel family protein OS=Tetrahymena thermophila SB210 |
| Align length |
111 |
| Score (bit) |
37.0 |
| E-value |
0.48 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914252|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G08.
(446 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|Q22A56|Q22A56_TETTH Cation channel family protein OS=Tetrahym... 37 0.48
tr|B6V3C2|B6V3C2_MAIZE PAN1 OS=Zea mays GN=pan1 PE=4 SV=1 36 1.1
tr|B6NSN6|B6NSN6_BRAFL Putative uncharacterized protein OS=Branc... 36 1.1
tr|Q6Z3S1|Q6Z3S1_ORYSJ Os08g0506400 protein OS=Oryza sativa subs... 35 2.4
tr|A2YWU2|A2YWU2_ORYSI Putative uncharacterized protein OS=Oryza... 35 2.4
tr|B8JKZ5|B8JKZ5_MOUSE Novel KRAB box domain containing protein ... 34 3.1
tr|B3NHH7|B3NHH7_DROER GG13753 OS=Drosophila erecta GN=GG13753 P... 34 3.1
tr|B6SYJ2|B6SYJ2_MAIZE Putative uncharacterized protein OS=Zea m... 33 7.0
tr|B4FUI1|B4FUI1_MAIZE Putative uncharacterized protein OS=Zea m... 33 7.0
tr|Q22KY4|Q22KY4_TETTH Neurohypophysial hormones, N-terminal Dom... 33 7.0
tr|B4JNJ9|B4JNJ9_DROGR GH24834 OS=Drosophila grimshawi GN=GH2483... 33 9.1
>tr|Q22A56|Q22A56_TETTH Cation channel family protein OS=Tetrahymena
thermophila SB210 GN=TTHERM_01277520 PE=4 SV=1
Length = 2629
Score = 37.0 bits (84), Expect = 0.48
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 13/111 (11%)
Frame = +3
Query: 15 TSNNLHKDKP-HFHSQ----PQPVRSKSPAR-------SHNHPKTKNIGISQLQGNSAKV 158
TS+ +D+P H+H + Q ++S+S + S +H + + + L + ++
Sbjct: 2334 TSSQYKEDQPQHYHQENSQAQQSLKSESNKKTSITCHQSQSHKNSFSKSLKLLNQSQKEL 2393
Query: 159 KYSWDSQ-QNGNKCMECLLTPHASNISISQLQGNSAKVKYSWDSQQNGNKC 308
+YS D Q QN + L+ H NIS Q+ V Y++ QQN +KC
Sbjct: 2394 RYSVDQQIQN----IAALMFLHNKNISSQQINN----VNYNYSYQQNSSKC 2436
>tr|B6V3C2|B6V3C2_MAIZE PAN1 OS=Zea mays GN=pan1 PE=4 SV=1
Length = 662
Score = 35.8 bits (81), Expect = 1.1
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = +2
Query: 305 MHGMPSHPPRPEPPLVRATLLQPFGAGLSLLHGI*PQFNVASCLKS 442
+HG P+ P P P VR +++Q GL+ LH P+ V C+KS
Sbjct: 454 LHGGPTASPTPLPWSVRLSIVQGAARGLAYLHECSPRRYVHGCIKS 499
>tr|B6NSN6|B6NSN6_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_128687 PE=4 SV=1
Length = 2957
Score = 35.8 bits (81), Expect = 1.1
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = +3
Query: 27 LHKDKPHFHSQPQPVRSKSPARSHNHPKTKNIGISQLQGNSAKVKYSWDSQQNGNK 194
+ K+ PH S +R KSP N P+ S++Q S K S +++QN K
Sbjct: 1174 VEKNSPHLESNSPRIRQKSPRIRQNSPRVGKKTPSEIQTTSQVEKKSGEAEQNSKK 1229
>tr|Q6Z3S1|Q6Z3S1_ORYSJ Os08g0506400 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0025J22.33 PE=2 SV=1
Length = 657
Score = 34.7 bits (78), Expect = 2.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 305 MHGMPSHPPRPEPPLVRATLLQPFGAGLSLLHGI*PQFNVASCLKS 442
+HG P+ P P P +R +++Q GL+ LH P+ V C+KS
Sbjct: 448 LHGGPTASPTPLPWSMRLSIVQGAARGLAYLHECSPRRYVHGCIKS 493
>tr|A2YWU2|A2YWU2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_29807 PE=4 SV=1
Length = 657
Score = 34.7 bits (78), Expect = 2.4
Identities = 17/46 (36%), Positives = 26/46 (56%)
Frame = +2
Query: 305 MHGMPSHPPRPEPPLVRATLLQPFGAGLSLLHGI*PQFNVASCLKS 442
+HG P+ P P P +R +++Q GL+ LH P+ V C+KS
Sbjct: 448 LHGGPTASPTPLPWSMRLSIVQGAARGLAYLHECSPRRYVHGCIKS 493
>tr|B8JKZ5|B8JKZ5_MOUSE Novel KRAB box domain containing protein
OS=Mus musculus GN=CH29-112O17.4-001 PE=4 SV=1
Length = 868
Score = 34.3 bits (77), Expect = 3.1
Identities = 29/120 (24%), Positives = 43/120 (35%), Gaps = 16/120 (13%)
Frame = +3
Query: 6 KPFTSNNLHKDKPHFHSQPQPVRSKSPARSHNHP----------------KTKNIGISQL 137
K FT N + K+ H+ +P + +S H K G S +
Sbjct: 543 KSFTQNKVLKNHYRIHTGEKPYKCNECGKSFTHSSKLQVHYRIHTGEKPYKCNECGKSFI 602
Query: 138 QGNSAKVKYSWDSQQNGNKCMECLLTPHASNISISQLQGNSAKVKYSWDSQQNGNKCMEC 317
Q + KV + + + KC EC S Q + KV YS + + KC EC
Sbjct: 603 QNSDLKVHHRIHTGEKPYKCNEC---------GKSFTQNSVLKVHYSVHTGEKPYKCNEC 653
>tr|B3NHH7|B3NHH7_DROER GG13753 OS=Drosophila erecta GN=GG13753 PE=4
SV=1
Length = 236
Score = 34.3 bits (77), Expect = 3.1
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)
Frame = +3
Query: 15 TSNNLHKDKPHFHSQPQPVRSKSPARSHNHPKTKNIGISQLQ-----GNSAKVKYSWDSQ 179
+S L +PH H+ P P + + + H++ KT N S Q G A S Q
Sbjct: 30 SSAALSNHQPHQHTHPHPQQQQQQQQQHSNTKTPNTNNSNTQATPTTGTGAATAASKQQQ 89
Query: 180 QNGN 191
Q GN
Sbjct: 90 QPGN 93
>tr|B6SYJ2|B6SYJ2_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 226
Score = 33.1 bits (74), Expect = 7.0
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +3
Query: 72 RSKSPARSHNHPKTKNIGISQLQGNSAKVKYSWDSQQNGNKCMECLLTPHASNISISQLQ 251
R+K + SH+ + K + S+ + + A KY+W + C C+ PH++ + +
Sbjct: 6 RNKKSSSSHSSSRFKRV--SRKEMSFAVEKYAWTNAT----CPVCMEFPHSAVLLLCSSH 59
Query: 252 GNSAKVKYSWDSQQNGNKCMECLL---TPHARNLP*FVQLSCNL 374
GN + S Q+ N C++ L+ A P ++L C L
Sbjct: 60 GNGCRPYICASSYQHSN-CLDQLVMSCRKEASEDPDAIELMCPL 102
>tr|B4FUI1|B4FUI1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 226
Score = 33.1 bits (74), Expect = 7.0
Identities = 26/104 (25%), Positives = 48/104 (46%), Gaps = 3/104 (2%)
Frame = +3
Query: 72 RSKSPARSHNHPKTKNIGISQLQGNSAKVKYSWDSQQNGNKCMECLLTPHASNISISQLQ 251
R+K + SH+ + K + S+ + + A KY+W + C C+ PH++ + +
Sbjct: 6 RNKKSSSSHSSSRFKRV--SRKEMSFAVEKYAWTNAT----CPVCMEFPHSAVLLLCSSH 59
Query: 252 GNSAKVKYSWDSQQNGNKCMECLL---TPHARNLP*FVQLSCNL 374
GN + S Q+ N C++ L+ A P ++L C L
Sbjct: 60 GNGCRPYICASSYQHSN-CLDQLVMSCRKEASEDPDAIELMCPL 102
>tr|Q22KY4|Q22KY4_TETTH Neurohypophysial hormones, N-terminal Domain
containing protein OS=Tetrahymena thermophila SB210
GN=TTHERM_01178710 PE=4 SV=1
Length = 1594
Score = 33.1 bits (74), Expect = 7.0
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 5/59 (8%)
Frame = +3
Query: 156 VKYSWDSQ-----QNGNKCMECLLTPHASNISISQLQGNSAKVKYSWDSQQNGNKCMEC 317
V +WDS QNG++C+ C+ + ++ S+ Q N + SQ +GN+C +C
Sbjct: 966 VNNAWDSNCNQCNQNGDQCLTCI---NGYQLNNSKTQCNCSVQNCIQCSQYDGNQCQQC 1021
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