BP914255
Clone id YMU001_000056_G11
Library
Length 600
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GAGTACCTGCGAGAGAGAGAGGCTCAATGTAACTCAAAATGATAATTGTATTATGGTTGA
GCTTGAACAACTTACAGTGAGTGTGTACAATGCCTCTTATATAGGCATAAAATAGACGAC
CTCATGGGTGACTTCATCAGATAATACATCATCCACTGTGTCAGTAGTCCTAGGTGGAAA
GTGGCCACATGCTACCACATGGGATACACATGCCCAATGACATGTAGGCATCCTCAACAC
TAGTGAAGATGCGCACAAAGAAGCATAAGCGTAGGCCAAAGCCCACAGATCCCAACAATC
TGCAAATGATATTCTCATACAAGAATACCACTGTTGATCTAGTAGTATTATATGGCAATG
CCCTGGCTTCAACCCACTTGCTCACATAATAGGTAGCCATTATGATGTACCTACTTTTCC
TATAAGTTATTTCTTTGAATGGACCCATGAAGTCCAATTCCCATTTCATATATACTCCTA
ATGATCGTACTAGAGTCAGAGGTATCATGTCAGCTGCTGTTGGTCTTCCCACATGCTGAC
AAACGTCATAAGTTTTGCAAAATGCTCTGACATCCGCCATCATTGTTTGCCACCAGAGGA
■■Homology search results ■■ -
sp_hit_id O93209
Definition sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus
Align length 52
Score (bit) 36.2
E-value 0.13
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914255|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G11.
(600 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=p... 36 0.13
sp|P92516|M750_ARATH Uncharacterized mitochondrial protein AtMg0... 32 1.9
sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase OS=Aquifex aeolicus GN... 31 4.2
sp|Q92Q22|SYS_RHIME Seryl-tRNA synthetase OS=Rhizobium meliloti ... 31 5.5
sp|A0T0U3|YCF4_THAPS Photosystem I assembly protein ycf4 OS=Thal... 30 9.3
sp|A8I4J4|SYS_AZOC5 Seryl-tRNA synthetase OS=Azorhizobium caulin... 30 9.3
sp|Q9P2P1|K1305_HUMAN Integrase catalytic domain-containing prot... 30 9.3
sp|Q2JQK9|COXX_SYNJA Protoheme IX farnesyltransferase OS=Synecho... 30 9.3

>sp|O93209|POL_FFV Pro-Pol polyprotein OS=Feline foamy virus GN=pol
PE=3 SV=1
Length = 1156

Score = 36.2 bits (82), Expect = 0.13
Identities = 15/52 (28%), Positives = 26/52 (50%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGP 440
WW M D+ +F T +VC+ V + P +V + K+ +D++GP
Sbjct: 833 WWPKMKKDISSFLSTCNVCKMVNPLNLKPISPQAIVHPTKPFDKFYMDYIGP 884


>sp|P92516|M750_ARATH Uncharacterized mitochondrial protein
AtMg00750 OS=Arabidopsis thaliana GN=AtMg00750 PE=4 SV=1
Length = 119

Score = 32.3 bits (72), Expect = 1.9
Identities = 14/50 (28%), Positives = 22/50 (44%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFM 446
+W T D F + D CQ G T + +P + + V+ W + FM
Sbjct: 41 YWPTTFKDAHGFVSSCDACQRKGNFTKRNEMPQHFILEVEVFDVWGIYFM 90


>sp|O67258|SYK_AQUAE Lysyl-tRNA synthetase OS=Aquifex aeolicus
GN=lysS PE=3 SV=1
Length = 597

Score = 31.2 bits (69), Expect = 4.2
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
Frame = -3

Query: 511 DMIPLTLVRSLGV----YMKWELDFMGPFKEITY 422
DM L ++LG Y +WELDF PFK++ Y
Sbjct: 382 DMFVYLLEKTLGTLKVKYGEWELDFSPPFKKVRY 415


>sp|Q92Q22|SYS_RHIME Seryl-tRNA synthetase OS=Rhizobium meliloti
GN=serS PE=3 SV=1
Length = 427

Score = 30.8 bits (68), Expect = 5.5
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -3

Query: 322 LYENIICRLLGSVGFGLRLCFFVRIFTSVEDAYMSLGMCIPCG 194
L+ ++ G +GFG R + + ++ +DAY + C CG
Sbjct: 315 LHYRVMTLCTGDMGFGARKTYDLEVWLPGQDAYREISSCSVCG 357


>sp|A0T0U3|YCF4_THAPS Photosystem I assembly protein ycf4
OS=Thalassiosira pseudonana GN=ycf4 PE=3 SV=1
Length = 181

Score = 30.0 bits (66), Expect = 9.3
Identities = 13/54 (24%), Positives = 28/54 (51%)
Frame = -3

Query: 385 VSKWVEARALPYNTTRSTVVFLYENIICRLLGSVGFGLRLCFFVRIFTSVEDAY 224
+S +++ LP+ T + +VF+ + I+ G++ FGL + +F + Y
Sbjct: 37 ISSYLKINLLPFANT-TELVFIPQGIVMMFYGTLSFGLSIYIMATLFWDIGSGY 89


>sp|A8I4J4|SYS_AZOC5 Seryl-tRNA synthetase OS=Azorhizobium
caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571)
GN=serS PE=3 SV=1
Length = 445

Score = 30.0 bits (66), Expect = 9.3
Identities = 18/87 (20%), Positives = 35/87 (40%)
Frame = -3

Query: 454 DFMGPFKEITYRKSRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICRLLGSVGFG 275
D G ++ + K + + T S+ R L + L+ ++ G +GF
Sbjct: 290 DTRGMIRQHQFTKVEMVSITTPETSEEEHHRMLACAEAVLQKLDLHYRVVTLCTGDMGFA 349

Query: 274 LRLCFFVRIFTSVEDAYMSLGMCIPCG 194
R F + ++ ++AY + C CG
Sbjct: 350 SRKTFDIEVWLPGQNAYREISSCSVCG 376


>sp|Q9P2P1|K1305_HUMAN Integrase catalytic domain-containing protein
KIAA1305 OS=Homo sapiens GN=KIAA1305 PE=2 SV=3
Length = 1898

Score = 30.0 bits (66), Expect = 9.3
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 4/96 (4%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVC---QHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEIT 425
WW M V+ +C++ C +G P L RS + +++ +GP I+
Sbjct: 1571 WWPGMQEHVKDYCRSCLFCIPRNLIGSELKVIESPWPL-RSTAPWSNLQIEVVGPV-TIS 1628

Query: 424 YRKSRYIIMATYYVSKWVEARAL-PYNTTRSTVVFL 320
+++++ ++WVEA L PY T V L
Sbjct: 1629 EEGHKHVLIVADPNTRWVEAFPLKPYTHTAVAQVLL 1664


>sp|Q2JQK9|COXX_SYNJA Protoheme IX farnesyltransferase
OS=Synechococcus sp. (strain JA-3-3Ab) GN=ctaB PE=3 SV=1
Length = 331

Score = 30.0 bits (66), Expect = 9.3
Identities = 25/110 (22%), Positives = 51/110 (46%), Gaps = 5/110 (4%)
Frame = -3

Query: 526 RPTAADMIPLTLVR-SLGVYMKWELDFMGPFKEITYRKSRYIIMATYYVSKWVEARALPY 350
RPTAA ++ L+ + + + + L +G F S ++ + + K V+ P+
Sbjct: 214 RPTAAQILLYALLLVPVSLLLVYPLHVLGSFY-----LSAATLLGSLLIWKAVQLLQEPH 268

Query: 349 NTTRSTVVFLYENI----ICRLLGSVGFGLRLCFFVRIFTSVEDAYMSLG 212
+ R+T +F + N+ +C +G + L + + S++ Y SLG
Sbjct: 269 SRERATSLFTFANLYLLLLCGAMGLDRWSLTHTLWDQALASLQGVYASLG 318


tr_hit_id A5AFU5
Definition tr|A5AFU5|A5AFU5_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 99
Score (bit) 80.1
E-value 9.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914255|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G11.
(600 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A5AFU5|A5AFU5_VITVI Putative uncharacterized protein OS=Vitis... 80 9e-14
tr|Q2AA50|Q2AA50_ASPOF Retrotransposon gag protein OS=Asparagus ... 80 1e-13
tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis... 79 3e-13
tr|A5BTT2|A5BTT2_VITVI Putative uncharacterized protein OS=Vitis... 78 3e-13
tr|Q0ZCD3|Q0ZCD3_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1 76 1e-12
tr|A5CA60|A5CA60_VITVI Putative uncharacterized protein OS=Vitis... 76 1e-12
tr|A5C9L2|A5C9L2_VITVI Putative uncharacterized protein OS=Vitis... 76 1e-12
tr|A5BXW5|A5BXW5_VITVI Putative uncharacterized protein OS=Vitis... 76 1e-12
tr|A5BPN0|A5BPN0_VITVI Putative uncharacterized protein OS=Vitis... 76 1e-12
tr|Q2LEC5|Q2LEC5_9ROSI Integrase-like protein (Fragment) OS=(Pop... 76 2e-12
tr|A5C647|A5C647_VITVI Putative uncharacterized protein OS=Vitis... 76 2e-12
tr|A5BRS7|A5BRS7_VITVI Putative uncharacterized protein OS=Vitis... 76 2e-12
tr|A5BG26|A5BG26_VITVI Putative uncharacterized protein OS=Vitis... 76 2e-12
tr|A5BDP7|A5BDP7_VITVI Putative uncharacterized protein OS=Vitis... 76 2e-12
tr|A5AZB0|A5AZB0_VITVI Putative uncharacterized protein OS=Vitis... 76 2e-12
tr|A7QJX4|A7QJX4_VITVI Chromosome undetermined scaffold_108, who... 75 2e-12
tr|A5C050|A5C050_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12
tr|A5BQC4|A5BQC4_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12
tr|A5BAE8|A5BAE8_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12
tr|A5B7Z2|A5B7Z2_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12
tr|A5ATG4|A5ATG4_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12
tr|A5AHC2|A5AHC2_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12
tr|A5AFK5|A5AFK5_VITVI Putative uncharacterized protein OS=Vitis... 75 2e-12
tr|A5BJV3|A5BJV3_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12
tr|A5B960|A5B960_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12
tr|A5B2X9|A5B2X9_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12
tr|A5ATF8|A5ATF8_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12
tr|A5AMY5|A5AMY5_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12
tr|A5ACX9|A5ACX9_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12
tr|A5C562|A5C562_VITVI Putative uncharacterized protein OS=Vitis... 75 4e-12

>tr|A5AFU5|A5AFU5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_020138 PE=4 SV=1
Length = 667

Score = 80.1 bits (196), Expect = 9e-14
Identities = 40/99 (40%), Positives = 58/99 (58%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
WW ++ D + CK D CQ +G+ T +M+PL + + V+ W +DFMGPF +++R
Sbjct: 327 WWSSLFKDAHSMCKGCDQCQRLGKLTXRNMMPLNPILIVDVFDVWGIDFMGPF-PMSFRH 385

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
S YI++ YVSKWVEA N + + FL ENI R
Sbjct: 386 S-YILVGVDYVSKWVEAIPCRSNNHKVVLKFLKENIFAR 423


>tr|Q2AA50|Q2AA50_ASPOF Retrotransposon gag protein OS=Asparagus
officinalis GN=19.t00014 PE=4 SV=1
Length = 1788

Score = 79.7 bits (195), Expect = 1e-13
Identities = 42/100 (42%), Positives = 59/100 (59%)
Frame = -3

Query: 598 LWWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYR 419
L+W T+ D FCKT + CQ +G+ T +M+PL + S+ ++ W +DFMGPF
Sbjct: 1381 LYWPTLFKDSFEFCKTCNRCQLLGKVTRRNMMPLQPILSVELFDLWGIDFMGPFPNSF-- 1438

Query: 418 KSRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
+ YI++A Y+SKWVEA A N + V FL ENI R
Sbjct: 1439 GNVYILVAVEYMSKWVEAVACKTNDNKVVVKFLKENIFAR 1478


>tr|A5C0S0|A5C0S0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_032782 PE=4 SV=1
Length = 1425

Score = 78.6 bits (192), Expect = 3e-13
Identities = 40/99 (40%), Positives = 58/99 (58%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
WW ++ D + CK D CQ +G+ T +M+PL + + V+ WE+DFMGPF +++
Sbjct: 1078 WWPSLFKDAHSMCKGCDRCQRLGKLTRRNMMPLNPILIVDVFDVWEIDFMGPF-PMSFGH 1136

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
S YI++ YVSKWVEA N + + FL ENI R
Sbjct: 1137 S-YILVGVDYVSKWVEAIPCRSNDHKVVLKFLKENIFSR 1174


>tr|A5BTT2|A5BTT2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_003082 PE=4 SV=1
Length = 1680

Score = 78.2 bits (191), Expect = 3e-13
Identities = 40/99 (40%), Positives = 57/99 (57%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
WW ++ D CK D CQ +G+ T +M+PL + + V+ WE+DFMGPF +++
Sbjct: 1340 WWPSIFKDAHTMCKGCDWCQRLGKLTRRNMMPLNPILIVDVFDVWEIDFMGPF-PMSFGY 1398

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
S YI++ YVSKWVEA N + + FL ENI R
Sbjct: 1399 S-YILVGVDYVSKWVEAIPCRSNDHKVVLKFLMENIFAR 1436


>tr|Q0ZCD3|Q0ZCD3_POPTR Integrase OS=Populus trichocarpa PE=2 SV=1
Length = 1263

Score = 76.3 bits (186), Expect = 1e-12
Identities = 39/99 (39%), Positives = 57/99 (57%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
+W TM D AFCKT + CQ +G + M+PL + + ++ W +DFMGPF
Sbjct: 1092 YWPTMFKDSHAFCKTCENCQKLGSISKRHMMPLNPILVIEIFDCWGIDFMGPFPPSF--G 1149

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
YI++A YVSKW+EA + N ++ + FL ENI+ R
Sbjct: 1150 FLYILVAVDYVSKWIEAISSRNNDHKTVIKFLKENILSR 1188


>tr|A5CA60|A5CA60_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_021139 PE=4 SV=1
Length = 723

Score = 76.3 bits (186), Expect = 1e-12
Identities = 39/99 (39%), Positives = 57/99 (57%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
WW ++ D + CK D CQ +G+ T +M+PL + + V+ W +DFMGPF +++
Sbjct: 233 WWPSLFKDAHSMCKGCDRCQRLGKLTRRNMMPLNPILIVDVFDVWGIDFMGPF-PMSFGH 291

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
S YI++ YVSKWVEA N R + FL +NI R
Sbjct: 292 S-YILVGVDYVSKWVEAIPCRSNDHRVVLKFLKDNIFAR 329


>tr|A5C9L2|A5C9L2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_014495 PE=4 SV=1
Length = 771

Score = 76.3 bits (186), Expect = 1e-12
Identities = 37/99 (37%), Positives = 57/99 (57%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
WW ++ D + CK D CQ +G+ T +M+PL + + ++ W +DFMGPF +++
Sbjct: 431 WWPSLFKDAHSMCKGCDXCQRLGKLTRRNMMPLNPILIVDIFYVWGIDFMGPF-PMSFGH 489

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
S YI++ YVSKWVEA N + + FL +NI R
Sbjct: 490 S-YILVGVDYVSKWVEAIPCRSNDHKVVLKFLKDNIFAR 527


>tr|A5BXW5|A5BXW5_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_030385 PE=4 SV=1
Length = 699

Score = 76.3 bits (186), Expect = 1e-12
Identities = 37/99 (37%), Positives = 57/99 (57%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
WW ++ D + CK D CQ +G+ T +M+PL + + ++ W +DFMGPF +++
Sbjct: 233 WWPSLFKDAHSMCKACDRCQRLGKLTRRNMMPLNPILIVDIFXVWGIDFMGPF-PMSFGX 291

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
S YI++ YVSKWVEA N + + FL +NI R
Sbjct: 292 S-YILVGVDYVSKWVEAIPCRSNDHKVVLKFLKDNIFAR 329


>tr|A5BPN0|A5BPN0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_011537 PE=4 SV=1
Length = 697

Score = 76.3 bits (186), Expect = 1e-12
Identities = 39/99 (39%), Positives = 57/99 (57%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
WW ++ D A CK D CQ +G+ T +M+PL + + V+ W +DFMGPF +++
Sbjct: 9 WWPSLFKDAHAMCKGCDRCQRLGKLTRRNMMPLKPILIVDVFDVWGIDFMGPF-PMSFGH 67

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICR 299
S YI++ YVSKW+EA N + + FL ENI R
Sbjct: 68 S-YILVGVDYVSKWIEAIPCRSNDHKVVLKFLKENIFSR 105


>tr|Q2LEC5|Q2LEC5_9ROSI Integrase-like protein (Fragment)
OS=(Populus tomentosa x P. bolleana) x P. tomentosa var.
truncata PE=4 SV=1
Length = 123

Score = 75.9 bits (185), Expect = 2e-12
Identities = 43/110 (39%), Positives = 60/110 (54%)
Frame = -3

Query: 595 WWQTMMADVRAFCKTYDVCQHVGRPTAADMIPLTLVRSLGVYMKWELDFMGPFKEITYRK 416
+W TM D AFCKT + CQ +G + M+PL + + ++ W +DFMGPF
Sbjct: 18 YWPTMFKDSHAFCKTCENCQKLGSISKRHMMPLNPILVIEIFDCWGIDFMGPFPPSF--G 75

Query: 415 SRYIIMATYYVSKWVEARALPYNTTRSTVVFLYENIICRLLGSVGFGLRL 266
YI++A YVSKW+EA N ++ + FL ENI+ R FGL L
Sbjct: 76 FLYILVAVDYVSKWIEAIPSRTNDHKTVIKFLKENILSR------FGLPL 119