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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914256
Clone id YMU001_000056_G12
Library
Length 558
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000056_G12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTTTACCACTTGTTTCAATTGATGTTGACTCCATTGGTTGTAATATTGCACC
TTTTTGCAATTGTTGAGCATCGTCTACCTGCATCTGAGTAACCCTTGATCTTAATAGATC
CATTGTACTTTCTGGCAGAATCTGTCTCTATGGAGGGTGGTGACCATTGTGTAGCTTTTT
GGACTTTAAATTTCATTGACTTTGACATTTCTATAACCTGTTCTGGCAGCTTGAGGCTTT
GCACCATCTTTAGATAGTCTTTGACTTTAGTCGGGCCATCCGTAGGGGTTTGTACAAGGT
CATGACCTTGCTGATATTCGTTACCATGTGCATCTTGATATGCATGTGTGAGCTTGATCA
CATGTAGCTGTTTGAACACTATTGGATTTGTTGGTTTTTGACTCTGACTTGTGGAGATTA
GTTGAAACTTTTGTCCCTGATGATCTTCATATAAGCATTTATCTGCAAACTCTGATGGAA
TCTGGGTCAATTGGAAACTTCCAACAACCATATGGTCTTTCAATGGTTTCTGCTTTACAG
AGGTCTGTTGAATAGAAA
■■Homology search results ■■ -
sp_hit_id Q032Z6
Definition sp|Q032Z6|SECA_LACLS Protein translocase subunit secA OS=Lactococcus lactis subsp. cremoris (strain SK11)
Align length 36
Score (bit) 31.6
E-value 2.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914256|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G12.
         (546 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q032Z6|SECA_LACLS Protein translocase subunit secA OS=Lactoco...    32   2.6  
sp|A2RHJ5|SECA_LACLM Protein translocase subunit secA OS=Lactoco...    32   2.6  
sp|P15419|VG2_BPI22 Gene II protein OS=Enterobacteria phage I2-2...    31   4.4  
sp|Q8DZC6|RPIA_STRA5 Ribose-5-phosphate isomerase A OS=Streptoco...    31   4.4  
sp|Q8E4Y6|RPIA_STRA3 Ribose-5-phosphate isomerase A OS=Streptoco...    31   4.4  
sp|Q3K0S0|RPIA_STRA1 Ribose-5-phosphate isomerase A OS=Streptoco...    31   4.4  
sp|Q61838|A2M_MOUSE Alpha-2-macroglobulin OS=Mus musculus GN=A2m...    30   9.9  

>sp|Q032Z6|SECA_LACLS Protein translocase subunit secA
           OS=Lactococcus lactis subsp. cremoris (strain SK11)
           GN=secA PE=3 SV=1
          Length = 865

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 295 GHDLVQTPTDGPTKVKDYLKMVQSLKLPEQVIEMSK 188
           GH+L     D  T VKD L+ VQ+  LPE+ IE+S+
Sbjct: 661 GHELAGNLKDEET-VKDLLQTVQNTMLPEEAIELSE 695


>sp|A2RHJ5|SECA_LACLM Protein translocase subunit secA
           OS=Lactococcus lactis subsp. cremoris (strain MG1363)
           GN=secA PE=3 SV=1
          Length = 865

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 17/36 (47%), Positives = 23/36 (63%)
 Frame = -3

Query: 295 GHDLVQTPTDGPTKVKDYLKMVQSLKLPEQVIEMSK 188
           GH+L     D  T VKD L+ VQ+  LPE+ IE+S+
Sbjct: 661 GHELAGNLKDEET-VKDLLQTVQNTMLPEEAIELSE 695


>sp|P15419|VG2_BPI22 Gene II protein OS=Enterobacteria phage I2-2
           GN=II PE=4 SV=1
          Length = 344

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = -3

Query: 343 KLTHAYQDAHGNEYQQGHDLVQTPTDGPTKVKDYLKMVQSLKLPEQV 203
           K TH Y D + +++ QGH++V +       +  Y +M+  L +P  +
Sbjct: 60  KATHLYVDGNPSKWLQGHNIVGSDDLNGLMIAFYARMLSLLNIPHHL 106


>sp|Q8DZC6|RPIA_STRA5 Ribose-5-phosphate isomerase A
           OS=Streptococcus agalactiae serotype V GN=rpiA PE=3 SV=1
          Length = 223

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 286 LVQTPTDGPTKVKDYLKMVQSL---KLPEQVIEMSKSMKFKVQKATQWSPPSIETDSAR 119
           +V TPT     V D  K+V++L   KLP +V+       F+V K+  + P   ET+  R
Sbjct: 106 IVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDR 164


>sp|Q8E4Y6|RPIA_STRA3 Ribose-5-phosphate isomerase A
           OS=Streptococcus agalactiae serotype III GN=rpiA PE=3
           SV=1
          Length = 223

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 286 LVQTPTDGPTKVKDYLKMVQSL---KLPEQVIEMSKSMKFKVQKATQWSPPSIETDSAR 119
           +V TPT     V D  K+V++L   KLP +V+       F+V K+  + P   ET+  R
Sbjct: 106 IVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDR 164


>sp|Q3K0S0|RPIA_STRA1 Ribose-5-phosphate isomerase A
           OS=Streptococcus agalactiae serotype Ia GN=rpiA PE=3
           SV=1
          Length = 223

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = -3

Query: 286 LVQTPTDGPTKVKDYLKMVQSL---KLPEQVIEMSKSMKFKVQKATQWSPPSIETDSAR 119
           +V TPT     V D  K+V++L   KLP +V+       F+V K+  + P   ET+  R
Sbjct: 106 IVATPTKEYIWVVDESKLVETLGAFKLPVEVVRYGSERLFRVFKSKGYCPSFRETEGDR 164


>sp|Q61838|A2M_MOUSE Alpha-2-macroglobulin OS=Mus musculus GN=A2m
           PE=1 SV=2
          Length = 1495

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 16/108 (14%)
 Frame = -3

Query: 451 DKCLYEDHQGQKFQLISTSQSQKPTN---PIVFKQLHVIKLTHAYQDAH--GNEYQQGHD 287
           DK +Y+  Q  KF+++S   S +P N   P+V+ +         +Q+ H  G  +Q    
Sbjct: 132 DKPIYKPGQIVKFRVVSVDISFRPLNETFPVVYIETPKRNRIFQWQNIHLAGGLHQLSFP 191

Query: 286 LVQTPTDGPTKV---KDYLKM------VQSLKLP--EQVIEMSKSMKF 176
           L   P  G  KV   KD  K       V+   LP  E +I+M K+M F
Sbjct: 192 LSVEPALGIYKVVVQKDSGKKIEHSFEVKEYVLPKFEVIIKMQKTMAF 239
tr_hit_id Q4Y4M6
Definition tr|Q4Y4M6|Q4Y4M6_PLACH Putative uncharacterized protein (Fragment) OS=Plasmodium chabaudi
Align length 67
Score (bit) 35.4
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914256|Adiantum capillus-veneris mRNA, clone:
YMU001_000056_G12.
         (546 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4Y4M6|Q4Y4M6_PLACH Putative uncharacterized protein (Fragmen...    35   2.0  
tr|B0E5L7|B0E5L7_ENTDI Cell division control protein 15 , CDC15,...    35   2.6  
tr|A0BVW9|A0BVW9_PARTE Chromosome undetermined scaffold_130, who...    35   2.6  
tr|A0BS32|A0BS32_PARTE Chromosome undetermined scaffold_124, who...    35   2.6  
tr|A7Z9P6|A7Z9P6_BACA2 YwmB OS=Bacillus amyloliquefaciens (strai...    34   4.4  
tr|Q0AYX7|Q0AYX7_SYNWW Putative uncharacterized protein OS=Syntr...    34   5.8  
tr|Q23RN2|Q23RN2_TETTH Putative uncharacterized protein OS=Tetra...    34   5.8  
tr|B4ERR0|B4ERR0_9MURI Growth hormone receptor (Fragment) OS=Myo...    33   7.6  
tr|B6PNJ2|B6PNJ2_BRAFL Putative uncharacterized protein OS=Branc...    33   7.6  
tr|B7BMY7|B7BMY7_9CLOT Putative uncharacterized protein OS=Clost...    33   9.9  
tr|B4L2V8|B4L2V8_DROMO GI15146 OS=Drosophila mojavensis GN=GI151...    33   9.9  
tr|Q4PAY8|Q4PAY8_USTMA Putative uncharacterized protein OS=Ustil...    33   9.9  

>tr|Q4Y4M6|Q4Y4M6_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC000134.01.0 PE=4 SV=1
          Length = 205

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 17/67 (25%), Positives = 38/67 (56%)
 Frame = -3

Query: 445 CLYEDHQGQKFQLISTSQSQKPTNPIVFKQLHVIKLTHAYQDAHGNEYQQGHDLVQTPTD 266
           C+Y+ H G+   +++  + +  T  + F+ LH++K T+  ++ H N+ Q+  +  +T  D
Sbjct: 128 CIYDTHTGKLLNILTGHKKEVTT--LCFEPLHLLKETNIKKNTHENKKQKKEE-QETSND 184

Query: 265 GPTKVKD 245
              K+K+
Sbjct: 185 KDNKIKN 191


>tr|B0E5L7|B0E5L7_ENTDI Cell division control protein 15 , CDC15,
           putative OS=Entamoeba dispar SAW760 GN=EDI_345270 PE=4
           SV=1
          Length = 1325

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 28/113 (24%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
 Frame = -3

Query: 523 KQKPLKDHMVVGSFQLTQIPSEFADKCLYEDHQGQKFQLISTSQSQKPTNPIVFKQLHVI 344
           K+KP+K H  V   ++ +  +      L ++ +GQ  Q  ++ +SQK T PI  ++    
Sbjct: 127 KRKPVKKHSDVPKLEIKKTENNIIPIQLDDNTKGQYKQTSTSPKSQKVTQPITPRK-EST 185

Query: 343 KLTHAYQDAHGNEYQQGHDLVQTPTDGP-TKVKDYLKMVQSLKLPEQVIEMSK 188
           K+      + G  +     L+Q+       K+ +  +  QSLK  E+ ++ SK
Sbjct: 186 KIDEVQNKSFGRSWLSPRKLLQSSKSNTLCKMDEKKEEHQSLKHKEKKLKKSK 238


>tr|A0BVW9|A0BVW9_PARTE Chromosome undetermined scaffold_130, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00032538001 PE=4 SV=1
          Length = 423

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 36/156 (23%), Positives = 69/156 (44%), Gaps = 13/156 (8%)
 Frame = -3

Query: 538 QQTSVKQKPLKDHMVVGSFQLTQIPSEF--------ADKCLYEDHQGQKFQLISTSQSQK 383
           +QT ++ +  K++ V+ S Q+ +  + +        A     E  Q  +  +I T + Q+
Sbjct: 49  EQTPIQLQSKKENQVIASIQVQENDTNYFYISKRQSAKSSSLEKKQTIQPNIIQTEEPQQ 108

Query: 382 PTNPIVFKQLHVIKLTHAYQ-----DAHGNEYQQGHDLVQTPTDGPTKVKDYLKMVQSLK 218
            T+  V K    +K+   +Q       + N Y+Q  + + TP +   ++KD  K  Q+  
Sbjct: 109 QTHLQVRKNSQ-LKIQPVFQVKIQITQYNNNYEQVTEQLLTPQNAAQQMKDIFKKEQNEL 167

Query: 217 LPEQVIEMSKSMKFKVQKATQWSPPSIETDSARKYN 110
            P Q+I+   S  F+ Q     +  S    SA ++N
Sbjct: 168 KPVQLIQ---SNIFQSQSREIINRRSTNQRSASEFN 200


>tr|A0BS32|A0BS32_PARTE Chromosome undetermined scaffold_124, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00031580001 PE=4 SV=1
          Length = 1278

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
 Frame = -3

Query: 538 QQTSVKQKPLKDHMVV---------GSFQLTQIPSEFADKCLYEDHQGQKFQLISTSQSQ 386
           QQ+++ QK L DH  +           FQ+  +  ++ ++ L+++ Q    +L      +
Sbjct: 407 QQSNIIQKGLGDHQFISQQRQVQDSNQFQIDNVDQDYQNEFLHKNQQHSNEELERKQIGE 466

Query: 385 KPTNPIVFKQLHVIKLTHAYQDAHG----NEYQQGHDLVQTPTDGPTKVKDYLKMVQSLK 218
           +  N +  ++L  IK+ +     H     N+Y    +L+           DYLK +Q L+
Sbjct: 467 QKQNKMQSEELEQIKMRNQLIQNHYNNVINQYINNDELI----GNQNSKDDYLKQIQQLQ 522


>tr|A7Z9P6|A7Z9P6_BACA2 YwmB OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=ywmB PE=4 SV=1
          Length = 246

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 22/93 (23%), Positives = 49/93 (52%)
 Frame = -3

Query: 457 FADKCLYEDHQGQKFQLISTSQSQKPTNPIVFKQLHVIKLTHAYQDAHGNEYQQGHDLVQ 278
           ++DK   ++H   K QL++T ++Q PT+ ++++Q+   +    + D +    +Q HD+ Q
Sbjct: 97  YSDK---KNHTTFKLQLVTTLKNQNPTSYLLYEQMSP-EQPENWNDTYEQFERQAHDIFQ 152

Query: 277 TPTDGPTKVKDYLKMVQSLKLPEQVIEMSKSMK 179
                 T +K +L    S+ L ++  ++ K  +
Sbjct: 153 NKVFIFTCLKGHLNDNMSIVLQKKAEQLMKEFE 185


>tr|Q0AYX7|Q0AYX7_SYNWW Putative uncharacterized protein
            OS=Syntrophomonas wolfei subsp. wolfei (strain
            Goettingen) GN=Swol_0755 PE=3 SV=1
          Length = 1756

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = -3

Query: 274  PTDGPTKVKDYLKMVQ---SLKLPEQVIEMSKSMKFKVQKATQWSPPSIETDSARKYNGS 104
            P     K++D    +Q   S  LP QV  +      K Q    W+P ++ TD A  ++ S
Sbjct: 991  PPPSIKKIEDIAVEIQVGDSFNLPTQVAALMSDDSTK-QVPISWTPSTVNTDMAGSFSFS 1049

Query: 103  IKIKGYSDA 77
             +++GYS A
Sbjct: 1050 GQVEGYSSA 1058


>tr|Q23RN2|Q23RN2_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01102780 PE=4
           SV=1
          Length = 603

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
 Frame = -3

Query: 460 EFADKCLYEDHQGQKFQLISTSQSQKPTNPIVFKQLHVIKLTHAYQDAHGNE----YQQG 293
           +F+   L + +QG +   IST  S K T  ++ K   +   ++   D   NE     Q+ 
Sbjct: 226 DFSQVNLNQSNQGSQQSRISTQNSNKITADLIMKL--ISNKSNFCSDQFINELNLSLQKL 283

Query: 292 HDLVQTPTDGPTKVKDYLKMVQSLKLPEQVIEMSKSMKFKVQKATQWSPPSIETDSARKY 113
           + L+Q           YLK+    K  ++ IE SK  + K+    ++   SI+  S ++Y
Sbjct: 284 NPLLQ-----------YLKLNNIFKENKEPIEFSKISEEKLNLVGEYVKHSIQLTSDQQY 332

Query: 112 NGSIKIK 92
             SIK K
Sbjct: 333 ENSIKNK 339


>tr|B4ERR0|B4ERR0_9MURI Growth hormone receptor (Fragment)
           OS=Myomyscus yemeni GN=ghr PE=4 SV=1
          Length = 304

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
 Frame = -3

Query: 313 GNEYQQGHDLVQTPTDGPTKVK--DYLKMVQSLKLPEQVIEMSKSMKFKVQKATQWSPPS 140
           G E +  H L  TP + PT +   D+   V  +  P   + +S   K K   A   + P 
Sbjct: 136 GGETESTHQLASTPMNNPTSLANIDFYAQVSDI-TPAGGVVLSPGQKIKAGIAQGNTQPE 194

Query: 139 IETDSARKYNGSIKIKGYSDAGRRCSTIAKR 47
           + T S   Y+ +      SDA ++C  +A R
Sbjct: 195 VATPSQENYSMNSAYFCESDA-KKCIAVAPR 224


>tr|B6PNJ2|B6PNJ2_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_253903 PE=4 SV=1
          Length = 287

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 8/82 (9%)
 Frame = -2

Query: 524 KAETIERPYGCWKFPIDPDSIRVCR*MLI*RSSGTKVST--NLH--KSESKTNKSNSVQT 357
           K  T++R + C      PD ++ CR      S+  K+ST  +LH  + +    +SN V+ 
Sbjct: 24  KMSTLDRLHPC-----SPDRVKTCR------SNRVKMSTLDSLHPCRPDRVKCRSNRVKM 72

Query: 356 ATCDQAHTC----ISRCTW*RI 303
           +T D+ H C    +  C W R+
Sbjct: 73  STLDRLHPCRPDRVKTCRWNRV 94



 Score = 33.5 bits (75), Expect = 7.6
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 5/56 (8%)
 Frame = -2

Query: 482 PIDPDSIRVCR*MLI*RSSGTKVST--NLHKSES---KTNKSNSVQTATCDQAHTC 330
           P  PD ++ CR      S+  K+ST   LH       KT +SNSV+ +T D  H C
Sbjct: 188 PCSPDRVKTCR------SNSVKMSTLDRLHPCRPDRVKTCRSNSVKMSTLDHLHPC 237


>tr|B7BMY7|B7BMY7_9CLOT Putative uncharacterized protein
           OS=Clostridium hylemonae DSM 15053 GN=CLOHYLEM_01875
           PE=4 SV=1
          Length = 374

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = -3

Query: 220 KLPEQVIEMSKSMKFKVQKATQWSPPSIETDSARKYNGSIKIKGYSDAGRRC 65
           K+PE  +E+ K++ F  QK T+W  P  ET    K NG+  I GY   G +C
Sbjct: 14  KVPELGLELPKTVSFIEQKLTEWDIP-FET----KVNGNCVI-GYIGTGDKC 59