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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914267
Clone id YMU001_000057_A02
Library
Length 310
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_A02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGCTCAACCCAAGATTTTCTGGAAAACTATGTACACCTGTCGGCAAGAAACCTGTACAGC
ATGCTGAAATCTCCAAAAACTTGAAAATACCATATTTACATTGTTAGTAGCTCTGATATC
ACTCCCTCTGCTGCTTCTGCCTGCTAGACACTCGAGAATGAAACTCTCCCTCGATCAAAG
GGAAAGCTTTGGGCCTTCCAACCTGAAGACCAACTCCCTCCAGGATCAATTGGAAAGCTC
TCAGCTTTTTACATGAAGTCCAATGTCCGCCTGGGTCAAATGGGTAGCTCTCAGCCTCCC
TACTTGAGAA
■■Homology search results ■■ -
sp_hit_id Q1E2S2
Definition sp|Q1E2S2|PAN3_COCIM PAB-dependent poly(A)-specific ribonuclease subunit PAN3 OS=Coccidioides immitis
Align length 47
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914267|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_A02.
         (310 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q1E2S2|PAN3_COCIM PAB-dependent poly(A)-specific ribonuclease...    30   2.9  
sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=...    29   6.4  

>sp|Q1E2S2|PAN3_COCIM PAB-dependent poly(A)-specific ribonuclease
           subunit PAN3 OS=Coccidioides immitis GN=PAN3 PE=3 SV=2
          Length = 658

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +1

Query: 109 SSDITPSAASAC*TLENETLPRSKGKLWAFQPEDQLPPGSIGKLSAF 249
           S+ I+P AA+A   L    L RS       QPE   P  SIG++  F
Sbjct: 96  SATISPKAANAAPFLPKGVLSRSNAATPQSQPETSTPEWSIGEIQDF 142


>sp|Q96RT1|LAP2_HUMAN Protein LAP2 OS=Homo sapiens GN=ERBB2IP PE=1
            SV=2
          Length = 1412

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
 Frame = +1

Query: 169  PRSKGKLWAFQPEDQLPP----GSIGKLSAFYMKSNVRLGQMGSSQ 294
            P   G++WA  P D+L P     +I + S+    ++V LG  GS++
Sbjct: 1050 PARHGEMWAISPNDRLIPAVTRSTIQRQSSVSSTASVNLGDPGSTR 1095
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914267|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_A02.
         (310 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******