BP914268
Clone id YMU001_000057_A03
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_A03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AGGGGATGATATCAGCACAGAGTTTCTGCCAAGGGAACAGAAACAGGAGCATTCATCTGA
GCGCGATATTGAGGATAAATGTAAGAAGGGCTTGCAGTCCCTCCGATGAAATAGATGAAA
TCTTCTGTCAGCTGTCTCGTATTGCCTGTGCAGTTCTGGATAAGGCTGCCAAGTATGTAC
TCTTGTTGGGGTATTTTATTGCAGTTTGCAAAAGCTACAATGTGATTTCAAGGAGACACA
ACAAGGCCCTGCAAAGCACTCTGTTGAGGCTGCTCAAAGTTTCTTGGAATATTGCTGCTT
TCAAGCTCTAGCACAGCTGACTCAGAATAGTAATTTTCTACATGATTCTGATTTTCGACA
TTTTACTTCTGACTTTATGGTCGCTTGGGAAACACCATTAGCAAACGACGAAGAAGACAA
GCCAATGTACAAAAG
■■Homology search results ■■ -
sp_hit_id Q9C9M0
Definition sp|Q9C9M0|SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4 OS=Arabidopsis thaliana
Align length 19
Score (bit) 30.8
E-value 2.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914268|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_A03.
(435 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9C9M0|SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4 OS... 31 2.6
sp|P18915|CAH6_BOVIN Carbonic anhydrase 6 OS=Bos taurus GN=CA6 P... 30 4.3
sp|P27975|TAT_SIVV1 Protein Tat OS=Simian immunodeficiency virus... 30 4.4
sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5 OS=S... 30 5.6
sp|P04881|NCAP_VSNJO Nucleoprotein OS=Vesicular stomatitis New J... 29 7.5
sp|Q5UPU1|YR253_MIMIV Uncharacterized protein R253 OS=Acanthamoe... 29 9.6
sp|P33698|EXOP_RHIME Succinoglycan biosynthesis transport protei... 29 9.6
sp|Q8B0H9|NCAP_VSIVS Nucleoprotein OS=Vesicular stomatitis India... 29 9.8
sp|Q77E03|NCAP_VSIVN Nucleoprotein OS=Vesicular stomatitis India... 29 9.8
sp|P11212|NCAP_VSIVG Nucleoprotein OS=Vesicular stomatitis India... 29 9.8
sp|Q8B0H4|NCAP_VSIVC Nucleoprotein OS=Vesicular stomatitis India... 29 9.8
sp|P03521|NCAP_VSIVA Nucleoprotein OS=Vesicular stomatitis India... 29 9.8

>sp|Q9C9M0|SINL4_ARATH E3 ubiquitin-protein ligase SINA-like 4
OS=Arabidopsis thaliana GN=At1g66650 PE=2 SV=1
Length = 329

Score = 30.8 bits (68), Expect = 2.6
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1

Query: 258 CFAGPCCVSLKSHCSFCKL 202
CF CC+ LK CSFCKL
Sbjct: 107 CFL--CCIKLKKRCSFCKL 123


>sp|P18915|CAH6_BOVIN Carbonic anhydrase 6 OS=Bos taurus GN=CA6 PE=1
SV=2
Length = 319

Score = 30.0 bits (66), Expect = 4.3
Identities = 23/73 (31%), Positives = 30/73 (41%)
Frame = -2

Query: 323 ESAVLELESSNIPRNFEQPQQSALQGLVVSP*NHIVAFANCNKIPQQEYILGSLIQNCTG 144
E+++L ++ I N+ Q P NH V AN P QEY LGS +
Sbjct: 243 ENSLLNHQNETIQNNYRSTQ----------PLNHRVVEANFVSHPHQEYTLGSKLHFYLN 292

Query: 143 NTRQLTEDFIYFI 105
N Q E FI
Sbjct: 293 NIDQNLEYLRRFI 305


>sp|P27975|TAT_SIVV1 Protein Tat OS=Simian immunodeficiency virus
agm.vervet (isolate AGM155) GN=tat PE=3 SV=1
Length = 119

Score = 30.0 bits (66), Expect = 4.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1

Query: 297 QQYSKKL*AASTECFAGPCCVSLKSHCSFCKLQ 199
+QY K L + +CF CC HC FC L+
Sbjct: 17 KQYRKPLETCTNKCFCKKCCY----HCQFCFLR 45


>sp|Q9HFF5|PDS5_SCHPO Sister chromatid cohesion protein pds5
OS=Schizosaccharomyces pombe GN=pds5 PE=1 SV=1
Length = 1205

Score = 29.6 bits (65), Expect = 5.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3

Query: 138 RIACAVLDKAAKYVLLLGYFIAVCKSYN 221
R+ +L + KY LL Y+I CK+YN
Sbjct: 499 RVFILLLQRQVKYSELLNYYIECCKNYN 526


>sp|P04881|NCAP_VSNJO Nucleoprotein OS=Vesicular stomatitis New
Jersey virus (strain Ogden subtype Concan) GN=N PE=1
SV=1
Length = 422

Score = 29.3 bits (64), Expect = 7.5
Identities = 12/51 (23%), Positives = 23/51 (45%)
Frame = -1

Query: 171 WQPYPELHRQYETADRRFHLFHRRDCKPFLHLSSISRSDECSCFCSLGRNS 19
W+ P + D FH+F + + P + + +SR +C+ + G S
Sbjct: 185 WENDPNFTKIVAAVDMFFHMFKKHERAPIRYGTIVSRFKDCAALATFGHLS 235


>sp|Q5UPU1|YR253_MIMIV Uncharacterized protein R253 OS=Acanthamoeba
polyphaga mimivirus GN=MIMI_R253 PE=1 SV=1
Length = 345

Score = 28.9 bits (63), Expect = 9.6
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = +2

Query: 224 DFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMVAWETPLA 403
DF ++ G +++ + ++L L+ N +F+HD++F F V+ +A
Sbjct: 104 DFLKSSAGECSKAIQTFSNESGNLDLESLLTLSPNKDFIHDTNFYKNLYGFNVSIADFIA 163

Query: 404 NDEEDK 421
N+ E K
Sbjct: 164 NNNEFK 169


>sp|P33698|EXOP_RHIME Succinoglycan biosynthesis transport protein
exoP OS=Rhizobium meliloti GN=exoP PE=4 SV=1
Length = 786

Score = 28.9 bits (63), Expect = 9.6
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +3

Query: 39 RNRSIHLSAILRINVRRACSPSDEIDEIFCQLSRIACAVLDKAAKYVLLLGYFIAVCKSY 218
+ RS+ LS+I+ PS+E + F L R+ AV +A + FIA+ +Y
Sbjct: 8 KQRSVPLSSIM---------PSEEQSDGFIDLDRLVAAVFRRARLVAAFVVLFIALGAAY 58

Query: 219 NVISRRHNKALQSTLL 266
+ + + ++ LL
Sbjct: 59 LLFATPYYTSMTQILL 74


>sp|Q8B0H9|NCAP_VSIVS Nucleoprotein OS=Vesicular stomatitis Indiana
virus (strain 85CLB South America) GN=N PE=3 SV=1
Length = 422

Score = 28.9 bits (63), Expect = 9.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1

Query: 129 DRRFHLFHRRDCKPFLHLSSISRSDECSCFCSLG 28
D FH+F + +C F + + +SR +C+ + G
Sbjct: 199 DMFFHMFKKHECASFRYGTIVSRFKDCAALATFG 232


>sp|Q77E03|NCAP_VSIVN Nucleoprotein OS=Vesicular stomatitis Indiana
virus (strain 98COE North America) GN=N PE=3 SV=1
Length = 422

Score = 28.9 bits (63), Expect = 9.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1

Query: 129 DRRFHLFHRRDCKPFLHLSSISRSDECSCFCSLG 28
D FH+F + +C F + + +SR +C+ + G
Sbjct: 199 DMFFHMFKKHECASFRYGTIVSRFKDCAALATFG 232


>sp|P11212|NCAP_VSIVG Nucleoprotein OS=Vesicular stomatitis Indiana
virus (strain Glasgow) GN=N PE=1 SV=1
Length = 422

Score = 28.9 bits (63), Expect = 9.8
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1

Query: 129 DRRFHLFHRRDCKPFLHLSSISRSDECSCFCSLG 28
D FH+F + +C F + + +SR +C+ + G
Sbjct: 199 DMFFHMFKKHECASFRYGTIVSRFKDCAALATFG 232


tr_hit_id Q75H49
Definition tr|Q75H49|Q75H49_ORYSJ Putative uncharacterized protein OSJNBa0006O14.4 (Putative uncharacterized protein) OS=Oryza sativa subsp. japonica
Align length 70
Score (bit) 60.8
E-value 3.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914268|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_A03.
(435 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q75H49|Q75H49_ORYSJ Putative uncharacterized protein OSJNBa00... 61 3e-08
tr|Q6AT99|Q6AT99_ORYSJ Os05g0264200 protein OS=Oryza sativa subs... 61 3e-08
tr|B8B042|B8B042_ORYSI Putative uncharacterized protein OS=Oryza... 61 3e-08
tr|Q8S808|Q8S808_ORYSJ Putative uncharacterized protein OSJNBa00... 59 1e-07
tr|Q33B99|Q33B99_ORYSJ Os10g0127700 protein OS=Oryza sativa subs... 59 1e-07
tr|A3C268|A3C268_ORYSJ Putative uncharacterized protein OS=Oryza... 59 1e-07
tr|B8BFF8|B8BFF8_ORYSI Putative uncharacterized protein OS=Oryza... 59 2e-07
tr|A9RU81|A9RU81_PHYPA Predicted protein OS=Physcomitrella paten... 58 2e-07
tr|A7PGU6|A7PGU6_VITVI Chromosome chr17 scaffold_16, whole genom... 58 3e-07
tr|A5C8S1|A5C8S1_VITVI Putative uncharacterized protein OS=Vitis... 58 3e-07
tr|A9TXU3|A9TXU3_PHYPA Predicted protein OS=Physcomitrella paten... 57 4e-07
tr|Q9C602|Q9C602_ARATH Putative uncharacterized protein T24P22.6... 56 1e-06
tr|Q8VXZ2|Q8VXZ2_ARATH Putative uncharacterized protein At1g4884... 56 1e-06
tr|Q8RX89|Q8RX89_ARATH AT5g23390/T32G24_2 OS=Arabidopsis thalian... 55 2e-06
tr|Q9FGE0|Q9FGE0_ARATH Gb|AAD20392.1 OS=Arabidopsis thaliana PE=... 54 3e-06
tr|A7QNN9|A7QNN9_VITVI Chromosome undetermined scaffold_133, who... 53 7e-06
tr|A5B1W1|A5B1W1_VITVI Putative uncharacterized protein OS=Vitis... 53 7e-06
tr|B8AFT6|B8AFT6_ORYSI Putative uncharacterized protein OS=Oryza... 53 9e-06
tr|A9RQR0|A9RQR0_PHYPA Predicted protein OS=Physcomitrella paten... 53 9e-06
tr|Q6H5V9|Q6H5V9_ORYSJ Os02g0637800 protein OS=Oryza sativa subs... 51 3e-05
tr|A3A9E3|A3A9E3_ORYSJ Putative uncharacterized protein OS=Oryza... 51 3e-05
tr|Q9LS55|Q9LS55_ARATH Gb|AAD20392.1 (Putative uncharacterized p... 49 2e-04
tr|Q7XKB6|Q7XKB6_ORYSJ OSJNBa0064G10.15 protein OS=Oryza sativa ... 48 3e-04
tr|Q259K5|Q259K5_ORYSA H0402C08.8 protein OS=Oryza sativa GN=H04... 48 3e-04
tr|Q0J909|Q0J909_ORYSJ Os04g0677400 protein OS=Oryza sativa subs... 48 3e-04
tr|B8ARG6|B8ARG6_ORYSI Putative uncharacterized protein OS=Oryza... 48 3e-04
tr|A3AYM6|A3AYM6_ORYSJ Putative uncharacterized protein OS=Oryza... 48 3e-04
tr|Q7X635|Q7X635_ORYSJ OSJNBa0060D06.2 protein (Putative unchara... 45 0.002
tr|Q653M2|Q653M2_ORYSJ Prephenate dehydratase-like OS=Oryza sati... 45 0.002
tr|Q00RP5|Q00RP5_ORYSA OSIGBa0113E10.11 protein OS=Oryza sativa ... 45 0.002

>tr|Q75H49|Q75H49_ORYSJ Putative uncharacterized protein
OSJNBa0006O14.4 (Putative uncharacterized protein)
OS=Oryza sativa subsp. japonica GN=OSJNBa0006O14.4 PE=4
SV=1
Length = 721

Score = 60.8 bits (146), Expect = 3e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +L+ DF K + A++FLEYCC +ALAQ +Q + +L D FR D M+
Sbjct: 75 STDELRYDFDMQASDSIKQQINYARNFLEYCCLRALAQASQIAGYLSDKSFRRLNFDMML 134

Query: 383 AWETPLANDE 412
AWE P ++ +
Sbjct: 135 AWEVPSSSSQ 144


>tr|Q6AT99|Q6AT99_ORYSJ Os05g0264200 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0053F13.16 PE=4 SV=1
Length = 695

Score = 60.8 bits (146), Expect = 3e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +L+ DF K + A++FLEYCC +ALAQ +Q + +L D FR D M+
Sbjct: 75 STDELRYDFDMQASDSIKQQINYARNFLEYCCLRALAQASQIAGYLSDKSFRRLNFDMML 134

Query: 383 AWETPLANDE 412
AWE P ++ +
Sbjct: 135 AWEVPSSSSQ 144


>tr|B8B042|B8B042_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_19225 PE=4 SV=1
Length = 695

Score = 60.8 bits (146), Expect = 3e-08
Identities = 27/70 (38%), Positives = 40/70 (57%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +L+ DF K + A++FLEYCC +ALAQ +Q + +L D FR D M+
Sbjct: 75 STDELRYDFDMQASDSIKQQINYARNFLEYCCLRALAQASQIAGYLSDKSFRRLNFDMML 134

Query: 383 AWETPLANDE 412
AWE P ++ +
Sbjct: 135 AWEVPSSSSQ 144


>tr|Q8S808|Q8S808_ORYSJ Putative uncharacterized protein
OSJNBa0020E23.16 OS=Oryza sativa subsp. japonica
GN=OSJNBa0020E23.16 PE=4 SV=1
Length = 814

Score = 58.9 bits (141), Expect = 1e-07
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +LQ DF K A++FLEYCC +ALA +Q + +L D FR D M+
Sbjct: 77 STDELQYDFDMQASDSIKQPRNYARNFLEYCCLRALAHASQVAGYLSDKSFRRLNFDMML 136

Query: 383 AWETPLANDE 412
AWE P ++ E
Sbjct: 137 AWEVPSSSSE 146


>tr|Q33B99|Q33B99_ORYSJ Os10g0127700 protein OS=Oryza sativa subsp.
japonica GN=Os10g0127700 PE=2 SV=1
Length = 697

Score = 58.9 bits (141), Expect = 1e-07
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +LQ DF K A++FLEYCC +ALA +Q + +L D FR D M+
Sbjct: 77 STDELQYDFDMQASDSIKQPRNYARNFLEYCCLRALAHASQVAGYLSDKSFRRLNFDMML 136

Query: 383 AWETPLANDE 412
AWE P ++ E
Sbjct: 137 AWEVPSSSSE 146


>tr|A3C268|A3C268_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_029390 PE=4 SV=1
Length = 788

Score = 58.9 bits (141), Expect = 1e-07
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +LQ DF K A++FLEYCC +ALA +Q + +L D FR D M+
Sbjct: 77 STDELQYDFDMQASDSIKQPRNYARNFLEYCCLRALAHASQVAGYLSDKSFRRLNFDMML 136

Query: 383 AWETPLANDE 412
AWE P ++ E
Sbjct: 137 AWEVPSSSSE 146


>tr|B8BFF8|B8BFF8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_32634 PE=4 SV=1
Length = 697

Score = 58.5 bits (140), Expect = 2e-07
Identities = 28/70 (40%), Positives = 38/70 (54%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +LQ DF K A++FLEYCC +ALA +Q + +L D FR D M+
Sbjct: 77 STDELQYDFDIQASDSIKQPRNYARNFLEYCCLRALAHASQVAGYLSDKSFRRLNFDMML 136

Query: 383 AWETPLANDE 412
AWE P ++ E
Sbjct: 137 AWEVPSSSSE 146


>tr|A9RU81|A9RU81_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_119217 PE=4 SV=1
Length = 689

Score = 58.2 bits (139), Expect = 2e-07
Identities = 30/67 (44%), Positives = 39/67 (58%)
Frame = +2

Query: 209 QKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMVAW 388
++LQ F+E AKH + A LEY CF+AL+ Q ++ L D DFR T D M+AW
Sbjct: 61 EELQRHFEEEAPTSAKHPSKYALHLLEYSCFRALSVQHQVTDHLSDKDFRRLTFDMMLAW 120

Query: 389 ETPLAND 409
E P A D
Sbjct: 121 EAPGATD 127


>tr|A7PGU6|A7PGU6_VITVI Chromosome chr17 scaffold_16, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00017694001
PE=4 SV=1
Length = 654

Score = 57.8 bits (138), Expect = 3e-07
Identities = 30/67 (44%), Positives = 37/67 (55%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +L+ F KH A++FLEYCCF+ALA TQ + L D FR T D M+
Sbjct: 69 STMELRESFDAEASDSIKHPSCFARNFLEYCCFRALALSTQVTGHLADKKFRRLTFDMML 128

Query: 383 AWETPLA 403
AWE P A
Sbjct: 129 AWEAPSA 135


>tr|A5C8S1|A5C8S1_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_005220 PE=4 SV=1
Length = 691

Score = 57.8 bits (138), Expect = 3e-07
Identities = 30/67 (44%), Positives = 37/67 (55%)
Frame = +2

Query: 203 SLQKLQCDFKETQQGPAKHSVEAAQSFLEYCCFQALAQLTQNSNFLHDSDFRHFTSDFMV 382
S +L+ F KH A++FLEYCCF+ALA TQ + L D FR T D M+
Sbjct: 67 STMELRESFDAEASDSIKHPSCFARNFLEYCCFRALALSTQVTGHLADKKFRRLTFDMML 126

Query: 383 AWETPLA 403
AWE P A
Sbjct: 127 AWEAPSA 133