BP914274
Clone id YMU001_000057_A11
Library
Length 598
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TTTTTTTTTTTTTTTTTTTTCTTCAAATGTGCCCTTTGTAAAAGGGACAATTTAAAACCA
GTCCTCTGTTTGAAAGCAGGCAATCACAGCCAGCTAATACAGAAGGGTACTCTATAAAGA
ACACTCGGACAATGCCATTTGATGTACTGCTTCAGCAATTATTTATGAACGACAAGGTTT
TAATACCTCAATCGTTTCTTATGCCCCGAACGAATGCCCTGCTATTTACAAAGCTTGAAC
AATCCCAATTTACAACCTATATAGCCATTAGCTACATGTGTGTGTAGTTCAACAATGAGG
GCATACAAAAAGGAACCTTTAAAGCACGCCGATAAGGAACTTCACATTTTCAAGGTGTCC
CACTGAAAACCATTTTCTGCAGAGGGCATGCAAAAAGGAAGCCTTAATGCACGCTGATCA
CAAACTTCACGCTTTCATGGTGTCTCGCTGAAAACCATTTCCTGGTCACAGACTGGACAA
TATTGGCTTCGTTCCATCCACTCGTAAATGCATCCAAGGTGGAAATGATGCCCACAATGA
GTACTTATCTTGGGATTCTCCTTGGTGTAGCCATCAAGACAAGTCGGGCATACATCCT
■■Homology search results ■■ -
sp_hit_id Q8LE94
Definition sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana
Align length 53
Score (bit) 95.9
E-value 1.0e-19
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914274|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_A11.
(575 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290 OS=A... 96 1e-19
sp|Q9D0C1|RN115_MOUSE RING finger protein 115 OS=Mus musculus GN... 48 4e-05
sp|Q9Y4L5|RN115_HUMAN RING finger protein 115 OS=Homo sapiens GN... 48 4e-05
sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170 OS=A... 48 4e-05
sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase... 47 5e-05
sp|Q3T0W3|RN181_BOVIN RING finger protein 181 OS=Bos taurus GN=R... 47 7e-05
sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN... 47 7e-05
sp|Q9SJJ7|ATL2E_ARATH RING-H2 finger protein ATL2E OS=Arabidopsi... 47 7e-05
sp|Q9C7E9|ATL1E_ARATH RING-H2 finger protein ATL1E OS=Arabidopsi... 47 7e-05
sp|Q6AXU4|RN181_RAT RING finger protein 181 OS=Rattus norvegicus... 47 9e-05
sp|Q9P0P0|RN181_HUMAN RING finger protein 181 OS=Homo sapiens GN... 47 9e-05
sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=R... 46 1e-04
sp|Q9CY62|RN181_MOUSE RING finger protein 181 OS=Mus musculus GN... 46 2e-04
sp|Q9P3U8|YJ95_SCHPO Uncharacterized RING finger protein C548.05... 45 3e-04
sp|Q7ZW78|RN181_DANRE RING finger protein 181 OS=Danio rerio GN=... 45 3e-04
sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropica... 45 3e-04
sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevi... 45 3e-04
sp|Q63364|PJA2_RAT E3 ubiquitin-protein ligase Praja2 OS=Rattus ... 45 3e-04
sp|Q5R4R1|PJA2_PONAB E3 ubiquitin-protein ligase Praja2 OS=Pongo... 45 3e-04
sp|Q80U04|PJA2_MOUSE E3 ubiquitin-protein ligase Praja2 OS=Mus m... 45 3e-04
sp|O43164|PJA2_HUMAN E3 ubiquitin-protein ligase Praja2 OS=Homo ... 45 3e-04
sp|O55176|PJA1_MOUSE E3 ubiquitin-protein ligase Praja1 OS=Mus m... 45 3e-04
sp|Q8NG27|PJA1_HUMAN E3 ubiquitin-protein ligase Praja1 OS=Homo ... 45 3e-04
sp|Q9NVW2|RNF12_HUMAN E3 ubiquitin-protein ligase RNF12 OS=Homo ... 44 4e-04
sp|Q9LN71|RING1_ARATH E3 ubiquitin-protein ligase At1g12760 OS=A... 44 4e-04
sp|Q9Y252|RNF6_HUMAN RING finger protein 6 OS=Homo sapiens GN=RN... 44 6e-04
sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase rnf12-B OS=Xen... 44 6e-04
sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase rnf12-A OS=Xen... 44 6e-04
sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevi... 44 6e-04
sp|Q08109|HRD1_YEAST ERAD-associated E3 ubiquitin-protein ligase... 44 6e-04

>sp|Q8LE94|RING3_ARATH E3 ubiquitin-protein ligase At3g02290
OS=Arabidopsis thaliana GN=At3g02290/At3g02291 PE=2 SV=1
Length = 231

Score = 95.9 bits (237), Expect = 1e-19
Identities = 39/53 (73%), Positives = 43/53 (81%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
DVCPTCL+ YT ENPKI T C HHFHL CIYEWMERS+ CPVC + M F+ETP
Sbjct: 179 DVCPTCLEEYTSENPKIVTKCSHHFHLSCIYEWMERSENCPVCGKVMEFNETP 231


>sp|Q9D0C1|RN115_MOUSE RING finger protein 115 OS=Mus musculus
GN=Rnf115 PE=2 SV=1
Length = 305

Score = 47.8 bits (112), Expect = 4e-05
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3

Query: 567 CPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEM 433
CP C + YT E C H FH CI W+E CPVC + +
Sbjct: 229 CPVCKEDYTVEEKVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 273


>sp|Q9Y4L5|RN115_HUMAN RING finger protein 115 OS=Homo sapiens
GN=RNF115 PE=2 SV=2
Length = 304

Score = 47.8 bits (112), Expect = 4e-05
Identities = 18/45 (40%), Positives = 22/45 (48%)
Frame = -3

Query: 567 CPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEM 433
CP C + YT E C H FH CI W+E CPVC + +
Sbjct: 228 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVCRKSL 272


>sp|Q8LDB8|RING2_ARATH E3 ubiquitin-protein ligase At1g63170
OS=Arabidopsis thaliana GN=At1g63170 PE=2 SV=2
Length = 381

Score = 47.8 bits (112), Expect = 4e-05
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3

Query: 567 CPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFS 424
C CL Y E CGHHFH GC+ +W+ + CP+C ++ S
Sbjct: 325 CCICLSAYEDETELRELPCGHHFHCGCVDKWLYINATCPLCKYNILKS 372


>sp|Q75CC8|HRD1_ASHGO ERAD-associated E3 ubiquitin-protein ligase
HRD1 OS=Ashbya gossypii GN=HRD1 PE=3 SV=1
Length = 575

Score = 47.4 bits (111), Expect = 5e-05
Identities = 21/49 (42%), Positives = 27/49 (55%), Gaps = 7/49 (14%)
Frame = -3

Query: 570 VCPTCLDGY--TKENPKISTH-----CGHHFHLGCIYEWMERSQYCPVC 445
+C C+D T E K++ CGH H GC+ WMERSQ CP+C
Sbjct: 319 MCIICMDDMLPTTETTKMNRRAKMLPCGHMLHFGCLKSWMERSQTCPIC 367


>sp|Q3T0W3|RN181_BOVIN RING finger protein 181 OS=Bos taurus
GN=RNF181 PE=2 SV=1
Length = 153

Score = 47.0 bits (110), Expect = 7e-05
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3

Query: 567 CPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEM 433
CP CL + +E I C H FH CI W+ ++ CP+C E+
Sbjct: 76 CPVCLLEFEEEETAIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 120


>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens
GN=RNF126 PE=1 SV=1
Length = 326

Score = 47.0 bits (110), Expect = 7e-05
Identities = 19/50 (38%), Positives = 23/50 (46%)
Frame = -3

Query: 567 CPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSET 418
CP C D Y C H FH GCI W+E+ CPVC + + T
Sbjct: 229 CPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSLTGQNT 278


>sp|Q9SJJ7|ATL2E_ARATH RING-H2 finger protein ATL2E OS=Arabidopsis
thaliana GN=ATL2E PE=2 SV=1
Length = 237

Score = 47.0 bits (110), Expect = 7e-05
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3

Query: 567 CPTCLDGYTK-ENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSE 421
C CL + + E K+ HCGH FH+ C+ W+ CP+C +FS+
Sbjct: 140 CVICLSDFEEGETVKVIPHCGHVFHVDCVDTWLSSYVTCPLCRSNQLFSD 189


>sp|Q9C7E9|ATL1E_ARATH RING-H2 finger protein ATL1E OS=Arabidopsis
thaliana GN=ATL1E PE=2 SV=2
Length = 299

Score = 47.0 bits (110), Expect = 7e-05
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = -3

Query: 570 VCPTCLDGY-TKENPKISTHCGHHFHLGCIYEWMERSQYCPVC 445
+CP CL Y +KE + C H FH+ CI EW++ CPVC
Sbjct: 252 ICPICLSEYASKETVRCMPECDHCFHVQCIDEWLKIHSSCPVC 294


>sp|Q6AXU4|RN181_RAT RING finger protein 181 OS=Rattus norvegicus
GN=Rnf181 PE=1 SV=1
Length = 165

Score = 46.6 bits (109), Expect = 9e-05
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = -3

Query: 567 CPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEM 433
CP CL + +E I C H FH CI W+ ++ CP+C E+
Sbjct: 88 CPVCLLEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHEL 132


tr_hit_id B8LQG6
Definition tr|B8LQG6|B8LQG6_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 53
Score (bit) 108.0
E-value 2.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP914274|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_A11.
(575 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B8LQG6|B8LQG6_PICSI Putative uncharacterized protein OS=Picea... 108 2e-22
tr|A7QT95|A7QT95_VITVI Chromosome chr1 scaffold_166, whole genom... 100 4e-20
tr|B7FJT3|B7FJT3_MEDTR Putative uncharacterized protein OS=Medic... 99 2e-19
tr|Q1KUU2|Q1KUU2_9ROSI Putative uncharacterized protein OS=Cleom... 97 5e-19
tr|A7PAE6|A7PAE6_VITVI Chromosome chr14 scaffold_9, whole genome... 96 1e-18
tr|B7FJQ8|B7FJQ8_MEDTR Putative uncharacterized protein OS=Medic... 96 1e-18
tr|B4FYL2|B4FYL2_MAIZE Protein binding protein OS=Zea mays PE=2 ... 95 3e-18
tr|Q1KUY5|Q1KUY5_9ROSI Putative uncharacterized protein OS=Cleom... 94 5e-18
tr|Q2R0W9|Q2R0W9_ORYSJ Os11g0629300 protein OS=Oryza sativa subs... 94 7e-18
tr|Q1KUQ0|Q1KUQ0_9ROSI Putative uncharacterized protein OS=Cleom... 93 9e-18
tr|Q9LFU7|Q9LFU7_ARATH Putative uncharacterized protein F14F8_17... 93 1e-17
tr|Q9FMB2|Q9FMB2_ARATH Genomic DNA, chromosome 5, TAC clone:K15E... 92 2e-17
tr|Q94C65|Q94C65_ARATH Putative uncharacterized protein At5g3889... 92 2e-17
tr|Q5JK23|Q5JK23_ORYSJ cDNA clone:J033050H01, full insert sequen... 92 2e-17
tr|B8A8H1|B8A8H1_ORYSI Putative uncharacterized protein OS=Oryza... 92 2e-17
tr|A9U313|A9U313_PHYPA Predicted protein (Fragment) OS=Physcomit... 92 2e-17
tr|B6TB98|B6TB98_MAIZE Protein binding protein OS=Zea mays PE=2 ... 91 3e-17
tr|B4FWC3|B4FWC3_MAIZE Putative uncharacterized protein OS=Zea m... 91 3e-17
tr|B4F997|B4F997_MAIZE Putative uncharacterized protein OS=Zea m... 91 3e-17
tr|A5APU7|A5APU7_VITVI Putative uncharacterized protein OS=Vitis... 91 5e-17
tr|A7P2C2|A7P2C2_VITVI Chromosome chr1 scaffold_5, whole genome ... 90 8e-17
tr|B1Q490|B1Q490_CAPCH Putative zinc finger family protein OS=Ca... 87 5e-16
tr|A7PZN0|A7PZN0_VITVI Chromosome chr15 scaffold_40, whole genom... 86 1e-15
tr|A5BLE4|A5BLE4_VITVI Putative uncharacterized protein OS=Vitis... 86 1e-15
tr|A3CD20|A3CD20_ORYSJ Putative uncharacterized protein OS=Oryza... 86 1e-15
tr|A2ZG51|A2ZG51_ORYSI Putative uncharacterized protein OS=Oryza... 86 1e-15
tr|B6T6I9|B6T6I9_MAIZE Protein binding protein OS=Zea mays PE=2 ... 82 3e-14
tr|A7QNL6|A7QNL6_VITVI Chromosome chr2 scaffold_132, whole genom... 82 3e-14
tr|A8JET6|A8JET6_CHLRE Predicted protein (Fragment) OS=Chlamydom... 81 4e-14
tr|Q94AB7|Q94AB7_ARATH AT5g41350/MYC6_6 OS=Arabidopsis thaliana ... 81 5e-14

>tr|B8LQG6|B8LQG6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 233

Score = 108 bits (271), Expect = 2e-22
Identities = 43/53 (81%), Positives = 48/53 (90%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
D+CPTCLDGY ENPKI T CGHHFHLGCIYEWMERS+ CPVCD+EMVF+E+P
Sbjct: 181 DICPTCLDGYNTENPKIPTQCGHHFHLGCIYEWMERSKNCPVCDKEMVFTESP 233


>tr|A7QT95|A7QT95_VITVI Chromosome chr1 scaffold_166, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00006215001
PE=4 SV=1
Length = 232

Score = 100 bits (250), Expect = 4e-20
Identities = 40/53 (75%), Positives = 45/53 (84%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
DVCPTCLD YT ENPKI+T C HHFHLGCIYEWMERS+ CP+C +EM F E+P
Sbjct: 180 DVCPTCLDEYTPENPKITTQCSHHFHLGCIYEWMERSESCPICGKEMEFCESP 232


>tr|B7FJT3|B7FJT3_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 229

Score = 98.6 bits (244), Expect = 2e-19
Identities = 40/52 (76%), Positives = 43/52 (82%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSET 418
D+CPTCL+ YTKENPKI T C HHFHLGCIYEWMERS CPVC +EM F ET
Sbjct: 175 DICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKEMDFDET 226


>tr|Q1KUU2|Q1KUU2_9ROSI Putative uncharacterized protein OS=Cleome
spinosa PE=4 SV=1
Length = 229

Score = 97.4 bits (241), Expect = 5e-19
Identities = 40/53 (75%), Positives = 44/53 (83%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
DVCPTCL+ YT ENPKI T C HHFHLGCIYEWMERS+ CPVC + M F+ETP
Sbjct: 177 DVCPTCLEEYTLENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMEFNETP 229


>tr|A7PAE6|A7PAE6_VITVI Chromosome chr14 scaffold_9, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00038082001
PE=4 SV=1
Length = 225

Score = 96.3 bits (238), Expect = 1e-18
Identities = 39/52 (75%), Positives = 43/52 (82%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSET 418
DVCPTCL+ YT ENPKI T C HHFHLGCIYEWMERS+ CPVC + M+F ET
Sbjct: 173 DVCPTCLEEYTPENPKIMTKCSHHFHLGCIYEWMERSETCPVCGKVMMFDET 224


>tr|B7FJQ8|B7FJQ8_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 227

Score = 95.9 bits (237), Expect = 1e-18
Identities = 38/53 (71%), Positives = 44/53 (83%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
DVCPTCL+ YT+ENPKI T C HH+HLGCIYEWMERS CPVC + M+F E+P
Sbjct: 175 DVCPTCLEEYTEENPKIVTKCNHHYHLGCIYEWMERSDSCPVCGKVMLFDESP 227


>tr|B4FYL2|B4FYL2_MAIZE Protein binding protein OS=Zea mays PE=2
SV=1
Length = 225

Score = 94.7 bits (234), Expect = 3e-18
Identities = 38/53 (71%), Positives = 43/53 (81%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
DVCPTCL+ YT +NPKI T C HHFHLGCIYEWMERS CP+C +EM F E+P
Sbjct: 173 DVCPTCLEEYTPDNPKIITKCCHHFHLGCIYEWMERSDTCPICGKEMEFCESP 225


>tr|Q1KUY5|Q1KUY5_9ROSI Putative uncharacterized protein OS=Cleome
spinosa PE=4 SV=1
Length = 230

Score = 94.0 bits (232), Expect = 5e-18
Identities = 39/53 (73%), Positives = 43/53 (81%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
DVCPTCL+ YT ENPKI T C HHFHL CIYEWMERS+ CPVC + M F+ETP
Sbjct: 178 DVCPTCLEEYTLENPKIVTKCFHHFHLACIYEWMERSENCPVCGKVMEFNETP 230


>tr|Q2R0W9|Q2R0W9_ORYSJ Os11g0629300 protein OS=Oryza sativa subsp.
japonica GN=Os11g0629300 PE=2 SV=1
Length = 220

Score = 93.6 bits (231), Expect = 7e-18
Identities = 37/52 (71%), Positives = 42/52 (80%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSET 418
DVCPTCL+ YT ENP+I C HHFHLGCIYEWMERS+ CPVC ++M F ET
Sbjct: 168 DVCPTCLEDYTSENPRIVMQCSHHFHLGCIYEWMERSEACPVCGKKMEFDET 219


>tr|Q1KUQ0|Q1KUQ0_9ROSI Putative uncharacterized protein OS=Cleome
spinosa PE=4 SV=1
Length = 278

Score = 93.2 bits (230), Expect = 9e-18
Identities = 39/53 (73%), Positives = 43/53 (81%)
Frame = -3

Query: 573 DVCPTCLDGYTKENPKISTHCGHHFHLGCIYEWMERSQYCPVCDQEMVFSETP 415
DVCPT L+ YT ENPKI T C HHFHLGCIYEWMERS+ CPVC + M F+ETP
Sbjct: 226 DVCPTYLEEYTVENPKIVTKCSHHFHLGCIYEWMERSENCPVCGKVMEFNETP 278