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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914285
Clone id YMU001_000057_B11
Library
Length 341
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTGGTCTTGGTCAATACAGAAGAAACTGGCCTATTGCTGACGTCCACTGGACCTTGTGTC
TCTCTCTGACCACGAAACTCTCTGTGTCCTGCTTGCACCTCCTCTCTCCTCAATTCTTTT
AAGTCTGTCTTGTTTTATAGTGTCTGCAGCTTCCATCTCAAAAGGCAGATGTCTTTTAAG
CTGCTGGCTGTTCGTATTTACAACCCTAGGGACTGCAAACACGCTTTTGTCAGGCAAGTT
GTAGTATGGAGAGGCTTTTCCACCATGACCCTCCAGACCAGACTTGACCTTTTCAGCCAC
TGTCACTGAGGATTTGCTTTTGTGCTCAGGAACCTCCACCA
■■Homology search results ■■ -
sp_hit_id P49649
Definition sp|P49649|SECA_ODOSI Protein translocase subunit secA OS=Odontella sinensis
Align length 63
Score (bit) 33.9
E-value 0.26
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914285|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_B11.
         (341 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49649|SECA_ODOSI Protein translocase subunit secA OS=Odontel...    34   0.26 
sp|Q96J94|PIWL1_HUMAN Piwi-like protein 1 OS=Homo sapiens GN=PIW...    32   1.3  
sp|Q9JMB7|PIWL1_MOUSE Piwi-like protein 1 OS=Mus musculus GN=Piw...    31   2.2  
sp|Q8Z098|Y200_ANASP UPF0272 protein all0200 OS=Anabaena sp. (st...    30   3.7  
sp|Q6NZF1|ZC11A_MOUSE Zinc finger CCCH domain-containing protein...    30   4.9  
sp|Q6D958|RLMF_ERWCT Ribosomal RNA large subunit methyltransfera...    30   4.9  
sp|Q09683|RAD32_SCHPO DNA repair protein rad32 OS=Schizosaccharo...    29   8.3  
sp|Q6PLS1|POLG_ASGVK Genome polyprotein OS=Apple stem grooving v...    29   8.3  
sp|P44416|OAPB_HAEIN Opacity-associated protein oapB OS=Haemophi...    29   8.3  

>sp|P49649|SECA_ODOSI Protein translocase subunit secA OS=Odontella
           sinensis GN=secA PE=3 SV=1
          Length = 888

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 285 KSGLEGHGGKASPYYNLPDKSV--FAVPRVVNTNSQQLKRHLPFEMEAADTIKQDRLKRI 112
           + G +G  GK+  + ++ DK +  F   R+ N    QL   LP E E    I     KR+
Sbjct: 633 RCGRQGDPGKSRFFLSVEDKLIRLFGDARLENVLKSQLLDDLPLESELVTKILDSAQKRV 692

Query: 111 EER 103
           EER
Sbjct: 693 EER 695


>sp|Q96J94|PIWL1_HUMAN Piwi-like protein 1 OS=Homo sapiens GN=PIWIL1
           PE=1 SV=1
          Length = 861

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 133 FYSVCSFHLKRQMSFKLLAVRIYNPRDCKHAFVRQVVVWRGFSTMTLQ 276
           FY++    L + M+ + +    YNP D       ++V+W GF+T  LQ
Sbjct: 211 FYNIIFRRLLKIMNLQQIGRNYYNPNDPIDIPSHRLVIWPGFTTSILQ 258


>sp|Q9JMB7|PIWL1_MOUSE Piwi-like protein 1 OS=Mus musculus GN=Piwil1
           PE=1 SV=1
          Length = 862

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 133 FYSVCSFHLKRQMSFKLLAVRIYNPRDCKHAFVRQVVVWRGFSTMTLQ 276
           FY++    L + M+ + +    YNP D       ++V+W GF+T  LQ
Sbjct: 212 FYNIIFRRLLKIMNLQQIGRNYYNPSDPIDIPNHRLVIWPGFTTSILQ 259


>sp|Q8Z098|Y200_ANASP UPF0272 protein all0200 OS=Anabaena sp.
           (strain PCC 7120) GN=all0200 PE=3 SV=1
          Length = 426

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 94  CTSSLLNSFKSVLFYSVCSFHLKRQMSFKLLAVRIYNPRDCKHAFVRQVVVWRGFS 261
           C    LN  ++VLF    +  ++R    + +  R + P   K+  VR  + W G S
Sbjct: 326 CHPETLNDCEAVLFCETTTLGIRRTTQQRAVLQREFKPIQTKYGTVRIKIAWHGQS 381


>sp|Q6NZF1|ZC11A_MOUSE Zinc finger CCCH domain-containing protein
           11A OS=Mus musculus GN=Zc3h11a PE=1 SV=1
          Length = 792

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 20/85 (23%), Positives = 35/85 (41%)
 Frame = -3

Query: 300 VAEKVKSGLEGHGGKASPYYNLPDKSVFAVPRVVNTNSQQLKRHLPFEMEAADTIKQDRL 121
           V E+ K GLE  G         P +S         T+ + +       +   DT+K+   
Sbjct: 493 VKEEKKCGLEDSGD--------PPQSSVTKMEANETSDETISDPTKLAVNRCDTVKEKHT 544

Query: 120 KRIEERGGASRTQRVSWSERDTRSS 46
           +R++ERG + + +    S R   +S
Sbjct: 545 QRLQERGASQKEKAALSSVRGDEAS 569


>sp|Q6D958|RLMF_ERWCT Ribosomal RNA large subunit methyltransferase
           F OS=Erwinia carotovora subsp. atroseptica GN=rlmF PE=3
           SV=1
          Length = 311

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -3

Query: 177 KRHLPFEMEAADTIKQDRLKRIEERGGASRTQRVSWSERDTRSSGR 40
           K HLP    A + +  ++++ I+   G  +++ V+WS  DT +  R
Sbjct: 261 KEHLPEIYRALEAVDAEKVRTIDMAQGQKQSRFVAWSFLDTAARAR 306


>sp|Q09683|RAD32_SCHPO DNA repair protein rad32
           OS=Schizosaccharomyces pombe GN=rad32 PE=1 SV=1
          Length = 649

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 6/103 (5%)
 Frame = -3

Query: 336 EVPEHKSKSSVTVAE------KVKSGLEGHGGKASPYYNLPDKSVFAVPRVVNTNSQQLK 175
           E+PE  S++S+ +AE         S L+ H   A+   +  +  + A P          +
Sbjct: 525 ELPEEVSETSINIAEHTPVLKHTSSLLDHHSPLAT---SSSEHEMEATPSPALLKKTNKR 581

Query: 174 RHLPFEMEAADTIKQDRLKRIEERGGASRTQRVSWSERDTRSS 46
           R LP  +   +T    R K +++      +Q    S+++T+S+
Sbjct: 582 RELPSSLTKKNTRTPQRSKEVKKVPARKLSQSTKKSDKNTQST 624


>sp|Q6PLS1|POLG_ASGVK Genome polyprotein OS=Apple stem grooving
           virus (strain Korea) PE=3 SV=1
          Length = 2105

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
 Frame = +1

Query: 76  NSLCPACTSSLLNSFKSVLFYSV----CSFHLKRQMSF---KLLAVRIYN 204
           N L   C  SLL+SFKSV F+S+     +  LK   +F   K+ ++ +YN
Sbjct: 80  NHLLYICVPSLLSSFKSVAFFSLRESKANSFLKMHSAFSHGKIKSMGMYN 129


>sp|P44416|OAPB_HAEIN Opacity-associated protein oapB OS=Haemophilus
           influenzae GN=oapB PE=4 SV=1
          Length = 134

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 24/83 (28%), Positives = 36/83 (43%)
 Frame = -3

Query: 294 EKVKSGLEGHGGKASPYYNLPDKSVFAVPRVVNTNSQQLKRHLPFEMEAADTIKQDRLKR 115
           EKV   L+   G+A  Y    D+ V    RVV+   ++ K++L +       + +     
Sbjct: 34  EKVDKALQK--GEADRYLCQDDRVV----RVVHATHKKYKKNLHYVTVTFQGVSEKLTLM 87

Query: 114 IEERGGASRTQRVSWSERDTRSS 46
           I ERG      R  W ERD  S+
Sbjct: 88  ISERGKNYANIRWMWQERDDFST 110
tr_hit_id Q1Z465
Definition tr|Q1Z465|Q1Z465_PHOPR Hypothetical tolA protein OS=Photobacterium profundum 3TCK
Align length 56
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914285|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_B11.
         (341 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1Z465|Q1Z465_PHOPR Hypothetical tolA protein OS=Photobacteri...    35   1.9  
tr|Q6LP46|Q6LP46_PHOPR Hypothetical tolA protein OS=Photobacteri...    35   2.4  
tr|Q123H3|Q123H3_POLSJ Putative uncharacterized protein OS=Polar...    34   3.2  
tr|A6N7Y9|A6N7Y9_CHICK Piwi-like 1 OS=Gallus gallus GN=PIWI PE=2...    33   5.5  
tr|Q4D876|Q4D876_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.1  
tr|A7ZFX0|A7ZFX0_CAMC1 Putative uncharacterized protein OS=Campy...    33   9.3  

>tr|Q1Z465|Q1Z465_PHOPR Hypothetical tolA protein OS=Photobacterium
           profundum 3TCK GN=P3TCK_27564 PE=4 SV=1
          Length = 347

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 18/56 (32%), Positives = 34/56 (60%)
 Frame = -3

Query: 228 KSVFAVPRVVNTNSQQLKRHLPFEMEAADTIKQDRLKRIEERGGASRTQRVSWSER 61
           ++V   P +VN  ++Q+++    + EAA   +QDRLKR+E++  +   QR +  +R
Sbjct: 43  QAVVVDPALVNQQAKQIRQ----QREAAKNAEQDRLKRLEQQAASLEKQRKAEEQR 94


>tr|Q6LP46|Q6LP46_PHOPR Hypothetical tolA protein OS=Photobacterium
           profundum GN=T2129 PE=4 SV=1
          Length = 347

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 23/74 (31%), Positives = 40/74 (54%)
 Frame = -3

Query: 282 SGLEGHGGKASPYYNLPDKSVFAVPRVVNTNSQQLKRHLPFEMEAADTIKQDRLKRIEER 103
           SG +    K  P  N   ++V   P +VN  ++Q+++    + EAA   +QDRLKR+E++
Sbjct: 26  SGTDFSTSKPKPSGNTI-QAVVVDPALVNQQAKQIRQ----QREAAKKSEQDRLKRLEQQ 80

Query: 102 GGASRTQRVSWSER 61
             +   QR +  +R
Sbjct: 81  AASLEKQRKAEEQR 94


>tr|Q123H3|Q123H3_POLSJ Putative uncharacterized protein
           OS=Polaromonas sp. (strain JS666 / ATCC BAA-500)
           GN=Bpro_4432 PE=4 SV=1
          Length = 434

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/73 (27%), Positives = 36/73 (49%)
 Frame = -3

Query: 258 KASPYYNLPDKSVFAVPRVVNTNSQQLKRHLPFEMEAADTIKQDRLKRIEERGGASRTQR 79
           +A+P   L  +S+ AV +        LKRH P E      ++    K +  R  A R++R
Sbjct: 341 RANP--TLLPESIEAVTKKAGVRRDLLKRHFPDEFATLAGLRSSAAKSLALRNAAERSER 398

Query: 78  VSWSERDTRSSGR 40
           ++ + +D  +SG+
Sbjct: 399 LASAMQDIATSGK 411


>tr|A6N7Y9|A6N7Y9_CHICK Piwi-like 1 OS=Gallus gallus GN=PIWI PE=2
           SV=1
          Length = 867

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = +1

Query: 133 FYSVCSFHLKRQMSFKLLAVRIYNPRDCKHAFVRQVVVWRGFSTMTLQ 276
           FY++    L + M+F+ +    YNP+D       +++VW GF++  LQ
Sbjct: 219 FYNIIFRRLLKMMNFQQIGRNYYNPKDPVSIPNHRLMVWPGFTSSILQ 266


>tr|Q4D876|Q4D876_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053509171.70 PE=4 SV=1
          Length = 550

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/97 (26%), Positives = 44/97 (45%)
 Frame = -3

Query: 336 EVPEHKSKSSVTVAEKVKSGLEGHGGKASPYYNLPDKSVFAVPRVVNTNSQQLKRHLPFE 157
           E+PE +    V    + K  L G G +A  Y+  PD  V +  R+     Q+ +     E
Sbjct: 273 ELPEKEPSPEVDAVTQPKRRL-GWGPEAEKYF--PDNYVASPDRIARLKRQEKRMQEKKE 329

Query: 156 MEAADTIKQDRLKRIEERGGASRTQRVSWSERDTRSS 46
            E  +  +Q+R K+ +E   A+  ++ + S   T SS
Sbjct: 330 KEEEEAARQEREKKEKEEEEATMRKKNAASSAPTFSS 366


>tr|A7ZFX0|A7ZFX0_CAMC1 Putative uncharacterized protein
           OS=Campylobacter concisus (strain 13826) GN=Ccon26_18430
           PE=4 SV=1
          Length = 412

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
 Frame = -3

Query: 336 EVPEHKSKSSVTVAEKVKSGLEGHG-----GKASPYYNLPDKSVFAVPRVVNTNSQQLKR 172
           E+ +   K ++  A+ +KS +EG       G+    Y L DK    + R + T  +++K 
Sbjct: 50  ELYDKMDKENLINAKNLKSAMEGINQALVSGEEKGLYELFDKRD-EINRAIETKREEIKN 108

Query: 171 HLPFEMEAADTIKQDR 124
            L    EAA+ + +DR
Sbjct: 109 RLKISFEAAEEVVKDR 124