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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914311
Clone id YMU001_000057_E04
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATTAGACCCTAGATAAAGAGAAGAAACACCTTTGGGTCCCCATTACTGGCCCATGCAAG
CCACACAACCAACCACACCAACATACAAAAATCAGACCAATGAATAGGCTATCTGGGTGA
GCCAAACACCAATATACCTCAAGGAAAAGAGGCCAAAGGTTGCCACCATATGAGCAGGCT
CTACCATCACCACTCTTGTCTCCCTTCTACAAATATCCCCATGTAGTAAAGCATTCAAAA
TGACACCAAACCATCGTTGATGCGTTATTTAGGATCTAGAGAGGCAACCTCCACTAGCTC
AAAAATGAAAGGGTTTGGCAAAGAGAGACCGTCTAAACAGAGGAAGGAGCTACCGGTGTC
TCACCCTAGAGATCGCCTCCCTCTGCACATTATGCATCTCTAACCTCCAACATAAATTTC
ACGAACTCCACCCTGCCATAGCACTCTCCATACGTGCCCCGACAACATGGCCTTGCACAT
TGTAGAGTGACAAACGGAGGAGCTCCGGTGAACCCTATGAGTCTTCAATCCAAAAAACTC
TTTGATGAAATACTCACTTGCCCACAATCAAACAAACTTACAACTTCTCCTTTCAGCGTG
AATNTTGGAGCCAATAGT
■■Homology search results ■■ -
sp_hit_id Q93442
Definition sp|Q93442|MED13_CAEEL Mediator of RNA polymerase II transcription subunit 13 OS=Caenorhabditis elegans
Align length 66
Score (bit) 34.3
E-value 0.53
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914311|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_E04.
         (618 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q93442|MED13_CAEEL Mediator of RNA polymerase II transcriptio...    34   0.53 
sp|Q5SCY2|NU2C_HUPLU NAD(P)H-quinone oxidoreductase chain 2, chl...    32   2.6  
sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus GN=H...    31   4.5  
sp|A2T377|NU2C_ANGEV NAD(P)H-quinone oxidoreductase chain 2, chl...    31   5.8  
sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus GN=V...    31   5.9  
sp|O73630|NFKB2_XENLA Nuclear factor NF-kappa-B p100 subunit OS=...    30   7.7  

>sp|Q93442|MED13_CAEEL Mediator of RNA polymerase II transcription
           subunit 13 OS=Caenorhabditis elegans GN=let-19 PE=1 SV=3
          Length = 2862

 Score = 34.3 bits (77), Expect = 0.53
 Identities = 18/66 (27%), Positives = 34/66 (51%)
 Frame = +1

Query: 16  KEKKHLWVPITGPCKPHNQPHQHTKIRPMNRLSG*AKHQYTSRKRGQRLPPYEQALPSPL 195
           K+K + W P  G  +     H H +  P N+++G +  +Y  +   +++  YE  LP+P 
Sbjct: 740 KDKYNRWKP--GMSRAEKIEHAHYQFDPSNQMTG-SPREYHLKDLPKKIQKYESILPTPK 796

Query: 196 LSPFYK 213
            + F+K
Sbjct: 797 GNKFFK 802


>sp|Q5SCY2|NU2C_HUPLU NAD(P)H-quinone oxidoreductase chain 2,
           chloroplastic OS=Huperzia lucidula GN=ndhB PE=3 SV=1
          Length = 505

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 116 PDSLFIGLIFVCWCGWLCGLHGPV 45
           P S F G +++ WCGW  GLH  V
Sbjct: 392 PLSGFFGKLYLFWCGWQAGLHSLV 415


>sp|Q8C2B3|HDAC7_MOUSE Histone deacetylase 7 OS=Mus musculus
           GN=Hdac7 PE=1 SV=2
          Length = 938

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 29/69 (42%), Positives = 34/69 (49%), Gaps = 4/69 (5%)
 Frame = +1

Query: 10  LDKEKKH--LW-VPITGPCKPH-NQPHQHTKIRPMNRLSG*AKHQYTSRKRGQRLPPYEQ 177
           LD    H  LW VP  GP   H  QP   T+     RLSG   H+  +R R + LPP   
Sbjct: 298 LDPSVSHAPLWTVPGLGPLPFHFAQPLLTTE-----RLSGSGLHRPLNRTRSEPLPP--S 350

Query: 178 ALPSPLLSP 204
           A  SPLL+P
Sbjct: 351 ATASPLLAP 359


>sp|A2T377|NU2C_ANGEV NAD(P)H-quinone oxidoreductase chain 2,
           chloroplastic OS=Angiopteris evecta GN=ndhB1 PE=3 SV=1
          Length = 494

 Score = 30.8 bits (68), Expect = 5.8
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = -2

Query: 239 FECFTTWGYL*KGDKSGDGRACSYGGNLWPLFLEVYWCLAH-----PDSLFIGLIFVCWC 75
           F C T +G     D   D    S    L  L L +  CL       P S F G +++ WC
Sbjct: 348 FACITLFGLRTGTDNIRDYAGLSTKDPL--LTLSLVLCLLSLGGIPPLSGFFGKLYLFWC 405

Query: 74  GWLCGLH 54
           GW  GL+
Sbjct: 406 GWKAGLY 412


>sp|Q62059|CSPG2_MOUSE Versican core protein OS=Mus musculus GN=Vcan
            PE=1 SV=2
          Length = 3357

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = +1

Query: 337  TEEGATGVSP*RSPPSAHYASLTSNINFTNSTLP*HSPYVPRQHGL 474
            TE GAT VSP  S    H++   S++ +  STLP   PY     G+
Sbjct: 2449 TEAGATDVSPTASAMFLHHSEYKSSL-YPTSTLPSTEPYKSPSEGI 2493


>sp|O73630|NFKB2_XENLA Nuclear factor NF-kappa-B p100 subunit
           OS=Xenopus laevis GN=nfkb2 PE=2 SV=1
          Length = 958

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 8/69 (11%)
 Frame = +1

Query: 406 SNINFT----NSTLP*HSP----YVPRQHGLAHCRVTNGGAPVNPMSLQSKKLFDEILTC 561
           SNIN+     NS     SP    Y    H + HC  TN        S+  KK  +E   C
Sbjct: 378 SNINYQYTGMNSAFYMSSPAGGGYHSSGHMMKHCSATNSSEKNQQPSISIKKEGEEASAC 437

Query: 562 PQSNKLTTS 588
            Q++  TT+
Sbjct: 438 SQTDSATTA 446
tr_hit_id A1CQA7
Definition tr|A1CQA7|A1CQA7_ASPCL C2H2 transcription factor, putative OS=Aspergillus clavatus
Align length 69
Score (bit) 36.6
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914311|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_E04.
         (618 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1CQA7|A1CQA7_ASPCL C2H2 transcription factor, putative OS=As...    37   1.2  
tr|Q9LX06|Q9LX06_ORYSJ Os06g0107600 protein OS=Oryza sativa subs...    34   6.0  
tr|B8B1J0|B8B1J0_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.0  
tr|A3B7L8|A3B7L8_ORYSJ Putative uncharacterized protein OS=Oryza...    34   6.0  
tr|A2Z4T4|A2Z4T4_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.1  
tr|Q47VG6|Q47VG6_COLP3 Rod shape-determining protein MreD OS=Col...    34   7.8  
tr|A6DMP1|A6DMP1_9BACT Putative uncharacterized protein OS=Lenti...    34   7.8  
tr|A0CJ20|A0CJ20_PARTE Chromosome undetermined scaffold_19, whol...    34   7.9  

>tr|A1CQA7|A1CQA7_ASPCL C2H2 transcription factor, putative
           OS=Aspergillus clavatus GN=ACLA_025450 PE=4 SV=1
          Length = 566

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
 Frame = +1

Query: 28  HLWVPITGPCKPHNQ----PHQHTKIRPMNRLSG*AKHQYTS------RKRGQRLPPYEQ 177
           H+ VPI GPC+ H++    PH H  I P    S  ++H  +S         G+  PP E 
Sbjct: 280 HVDVPIKGPCRSHHRCRIHPHSH-HIHPYGPYSPYSRHSRSSVSSQLISSPGETPPPLEG 338

Query: 178 ALPSPLLSP 204
            + S L SP
Sbjct: 339 GISSVLTSP 347


>tr|Q9LX06|Q9LX06_ORYSJ Os06g0107600 protein OS=Oryza sativa subsp.
           japonica GN=P0514G12.7-1 PE=4 SV=1
          Length = 363

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 166 VATFGLFSLRYIGVWLTQIAYSLV*FLYVGVVGC 65
           VA  GL + R + VW+ +  + ++  LY GVVGC
Sbjct: 230 VAVVGLSTQRNVSVWIVRTKFHILTILYAGVVGC 263


>tr|B8B1J0|B8B1J0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21319 PE=4 SV=1
          Length = 363

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 166 VATFGLFSLRYIGVWLTQIAYSLV*FLYVGVVGC 65
           VA  GL + R + VW+ +  + ++  LY GVVGC
Sbjct: 230 VAVVGLSTQRNVSVWIVRTKFHILTILYAGVVGC 263


>tr|A3B7L8|A3B7L8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019040 PE=4 SV=1
          Length = 376

 Score = 34.3 bits (77), Expect = 6.0
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = -3

Query: 166 VATFGLFSLRYIGVWLTQIAYSLV*FLYVGVVGC 65
           VA  GL + R + VW+ +  + ++  LY GVVGC
Sbjct: 230 VAVVGLSTQRNVSVWIVRTKFHILTILYAGVVGC 263


>tr|A2Z4T4|A2Z4T4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32660 PE=4 SV=1
          Length = 483

 Score = 34.3 bits (77), Expect = 6.1
 Identities = 20/63 (31%), Positives = 32/63 (50%)
 Frame = +1

Query: 208 YKYPHVVKHSK*HQTIVDALFRI*RGNLH*LKNERVWQRETV*TEEGATGVSP*RSPPSA 387
           Y Y H +  +     ++D ++R+ RG+   L N  VW+RE +        V+P  SP + 
Sbjct: 180 YHYCHTITDAFGMAQLLDTIYRLTRGDGDPLTNPPVWERECL-------VVAPSASPRTT 232

Query: 388 HYA 396
           HYA
Sbjct: 233 HYA 235


>tr|Q47VG6|Q47VG6_COLP3 Rod shape-determining protein MreD
           OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
           GN=mreD PE=4 SV=1
          Length = 159

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -2

Query: 155 WPLFLEVYWCLAHPDSLFIGLIFVCW-CGWLCG-LHGPVMGTQRCFFSLS 12
           W L + VYWCLA P+ +    IF  W  G++   L G V+G   C  +LS
Sbjct: 35  WVLIVLVYWCLALPNKI---NIFTAWVMGFILDVLLGSVLGVHACAMALS 81


>tr|A6DMP1|A6DMP1_9BACT Putative uncharacterized protein
           OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_16217 PE=4
           SV=1
          Length = 730

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = -3

Query: 253 WFGVILNALLHGDICRRETRVVMVEPAHMVATFGLFSLRYIGVWLTQIAYSLV*FLYVGV 74
           WF ++L AL  G +   E   +     H+V  F L     + VW+    +S V  L+VG 
Sbjct: 97  WFALLL-ALFPGGVSTTEKAFLNQYVTHVVMVFSLS----LSVWIVVNQHSKVRILFVGA 151

Query: 73  VGCVAC 56
           + C AC
Sbjct: 152 IFCGAC 157


>tr|A0CJ20|A0CJ20_PARTE Chromosome undetermined scaffold_19, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00007922001 PE=4 SV=1
          Length = 414

 Score = 33.9 bits (76), Expect = 7.9
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 58  KPHNQPHQHTKIRPMNRLSG*AKHQYTSRKRGQRLPPYEQALPSPL 195
           +PH QP+ H   +  N+ +G   H   ++   Q LPP  Q +P P+
Sbjct: 336 QPHIQPNPHPFQQKPNQFAGVQNHFQPNQAPNQNLPPPPQQIPDPI 381