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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914312
Clone id YMU001_000057_E05
Library
Length 406
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCAACCATGCATAAGTAGACATGTACCTCTAATTGTAATCAGTACTTGACGTATTTTTCG
TACTGGTAGTGATTACCCATATTGTACAACGTTTTTTATCGTTTTTTTGTACCGCATTTA
TCGTACCTATCCACCTTGCAACACTGTGTCTAATAGGTCAATTATGCTTTAAGCAAGCTA
TGCTGCTCTACTAATCATTCAAAGGCGGAGAAATGGCTAAAACAACTACACCTCTAACCT
TCGCACTTGCATGTCTACATTCTATTTATAAAGACAGGGATCCTGCGTTTTGGCCCCTTG
GAACGGTAGAACAATTGGCTCCATTACCCCAGAATAGCCAAATGTTCTGTGCCTGTTTGG
TTTGAACGGGACCATGTTCTCAAAACGTGGAGGATTCGGGTGGGGG
■■Homology search results ■■ -
sp_hit_id Q8TE76
Definition sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens
Align length 51
Score (bit) 33.1
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914312|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_E05.
         (406 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4 ...    33   0.44 
sp|Q8STI4|YA60_ENCCU Uncharacterized protein ECU10_0060/ECU11_20...    29   6.3  
sp|P16024|RPOC1_MAIZE DNA-directed RNA polymerase subunit beta' ...    29   6.3  
sp|Q6HP29|ARCA_BACHK Arginine deiminase OS=Bacillus thuringiensi...    29   8.2  
sp|Q81II1|ARCA_BACCR Arginine deiminase OS=Bacillus cereus (stra...    29   8.2  
sp|A1E9R5|RPOC1_SORBI DNA-directed RNA polymerase subunit beta' ...    29   8.2  
sp|Q6ENX2|RPOC1_SACOF DNA-directed RNA polymerase subunit beta' ...    29   8.2  
sp|Q6L3A6|RPOC1_SACHY DNA-directed RNA polymerase subunit beta' ...    29   8.2  

>sp|Q8TE76|MORC4_HUMAN MORC family CW-type zinc finger protein 4
           OS=Homo sapiens GN=MORC4 PE=1 SV=2
          Length = 937

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 396 NPPRFENMVPFKPNRHRTFGYSGVMEPIVLPFQGAKTQDPCLYK*NVDMQV 244
           NPP+   +       ++T GY G+  P VLP  G +++ P L    +D  V
Sbjct: 507 NPPKILTVQEMAGLNNKTIGYEGIHSPSVLPSGGEESRSPSLQLKPLDSSV 557


>sp|Q8STI4|YA60_ENCCU Uncharacterized protein ECU10_0060/ECU11_2080i
           OS=Encephalitozoon cuniculi GN=ECU10_0060 PE=4 SV=1
          Length = 283

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -1

Query: 331 WGNGANCSTVPRGQNAGSLSL*IECRHASAKVRG 230
           WG+GA  S  P G+  G       CRH+SA + G
Sbjct: 88  WGSGAGASCGPAGRRQGQ-----GCRHSSAGIYG 116


>sp|P16024|RPOC1_MAIZE DNA-directed RNA polymerase subunit beta'
           OS=Zea mays GN=rpoC1 PE=3 SV=1
          Length = 683

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 131 DRYDKCGTKKR*KTLYNMGNHYQYEK 54
           +RY+ CG     K  YN  N+Y+Y K
Sbjct: 553 NRYNSCGNSPNKKVNYNNNNYYKYTK 578


>sp|Q6HP29|ARCA_BACHK Arginine deiminase OS=Bacillus thuringiensis
           subsp. konkukian GN=arcA PE=3 SV=1
          Length = 410

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 322 HYPRIAKCSVPVWFERDH 375
           ++PR AK +VP+W +RD+
Sbjct: 193 YHPRFAKHNVPIWLDRDY 210


>sp|Q81II1|ARCA_BACCR Arginine deiminase OS=Bacillus cereus (strain
           ATCC 14579 / DSM 31) GN=arcA PE=3 SV=1
          Length = 410

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +1

Query: 322 HYPRIAKCSVPVWFERDH 375
           ++PR AK +VP+W +RD+
Sbjct: 193 YHPRFAKHNVPIWLDRDY 210


>sp|A1E9R5|RPOC1_SORBI DNA-directed RNA polymerase subunit beta'
           OS=Sorghum bicolor GN=rpoC1 PE=3 SV=1
          Length = 683

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 131 DRYDKCGTKKR*KTLYNMGNHYQYEK 54
           +RY+ CG     K  YN  N+Y+Y K
Sbjct: 553 NRYNSCGNSPNKKINYNNNNYYKYTK 578


>sp|Q6ENX2|RPOC1_SACOF DNA-directed RNA polymerase subunit beta'
           OS=Saccharum officinarum GN=rpoC1 PE=3 SV=1
          Length = 683

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 131 DRYDKCGTKKR*KTLYNMGNHYQYEK 54
           +RY+ CG     K  YN  N+Y+Y K
Sbjct: 553 NRYNSCGNSPNKKINYNNNNYYKYTK 578


>sp|Q6L3A6|RPOC1_SACHY DNA-directed RNA polymerase subunit beta'
           OS=Saccharum hybrid GN=rpoC1 PE=3 SV=1
          Length = 683

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 131 DRYDKCGTKKR*KTLYNMGNHYQYEK 54
           +RY+ CG     K  YN  N+Y+Y K
Sbjct: 553 NRYNSCGNSPNKKINYNNNNYYKYTK 578
tr_hit_id A1YR23
Definition tr|A1YR23|A1YR23_HUMAN MORC family CW-type zinc finger protein 4 OS=Homo sapiens
Align length 51
Score (bit) 33.5
E-value 5.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914312|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_E05.
         (406 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1YR23|A1YR23_HUMAN MORC family CW-type zinc finger protein 4...    33   5.5  
tr|B4DTP6|B4DTP6_HUMAN cDNA FLJ56908, highly similar to MORC fam...    33   7.2  
tr|A1YR24|A1YR24_HUMAN MORC family CW-type zinc finger protein 4...    33   7.2  

>tr|A1YR23|A1YR23_HUMAN MORC family CW-type zinc finger protein 4
           OS=Homo sapiens GN=MORC4 PE=2 SV=1
          Length = 900

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 396 NPPRFENMVPFKPNRHRTFGYSGVMEPIVLPFQGAKTQDPCLYK*NVDMQV 244
           NPP+   +       ++T GY G+  P VLP  G +++ P L    +D  V
Sbjct: 507 NPPKILTVQEMAELNNKTIGYEGIHSPSVLPSGGEESRSPSLQLKPLDSSV 557


>tr|B4DTP6|B4DTP6_HUMAN cDNA FLJ56908, highly similar to MORC family
           CW-type zinc finger 4 OS=Homo sapiens PE=2 SV=1
          Length = 808

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 396 NPPRFENMVPFKPNRHRTFGYSGVMEPIVLPFQGAKTQDPCLYK*NVDMQV 244
           NPP+   +       ++T GY G+  P VLP  G +++ P L    +D  V
Sbjct: 415 NPPKILTVQEMAGLNNKTIGYEGIHSPSVLPSGGEESRSPSLQLKPLDSSV 465


>tr|A1YR24|A1YR24_HUMAN MORC family CW-type zinc finger protein 4
           OS=Homo sapiens GN=MORC4 PE=2 SV=1
          Length = 648

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = -2

Query: 396 NPPRFENMVPFKPNRHRTFGYSGVMEPIVLPFQGAKTQDPCLYK*NVDMQV 244
           NPP+   +       ++T GY G+  P VLP  G +++ P L    +D  V
Sbjct: 255 NPPKILTVQEMAGLNNKTIGYEGIHSPSVLPSGGEESRSPSLQLKPLDSSV 305