| BP914319 |
| Clone id |
YMU001_000057_E12 |
| Library |
YMU01 |
| Length |
578 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000057_E12. |
| Accession |
BP914319 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
- |
| Sequence |
GGCTTTCTGATATGATACTATCTTCTCTGGTACAGTTTGACCGTCTGTGTCCACAAGCAA
TCTATCCAAGGTGATTGATGCGTTGTAGGTACGGAAGACTTTGGCTGTCAACTGGGGCAT
GATGTCCTTCAAATGAGCATTCAATTTGCTAGTATCCAGCTTGTCAAACAGGTCCTGTCC
ATTCTTCTTGGATTTCTTGAAATCTCCAATAGCTCTGAAAACCTGCTCTTCAACTTCGAC
AGTGTTAAAATATCTGATACTGTCTTTTCCAAGAAAATCAAACTCCAGTGATCTAGGAGG
AACCAGCGTGACATGCTCCACTTTCAAAGAACAACAACCAACTGTATCCGCCTCATCATC
ATCCTTCTCATTCCCAGCCCTGAGGGCTAGGCGATCAATAAGATACGTGGCAACAGCTAT
CTGTCTTTTGGTCTTATCAGCAGAGTTGAAGTTCTTTGTGTAAGTCCTCCTAATGTCTTC
TATATAATCCTTCAGAGTCCGCGCTTTTTCATACTTTTCTTTGTCACTTTGACCCTTCAA
ACTGCTGCTTGCAGCCAAAAAAACATACTTGAACTCCT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P30181 |
| Definition |
sp|P30181|TOP1_ARATH DNA topoisomerase 1 OS=Arabidopsis thaliana |
| Align length |
193 |
| Score (bit) |
267.0 |
| E-value |
3.0e-71 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914319|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_E12.
(578 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P30181|TOP1_ARATH DNA topoisomerase 1 OS=Arabidopsis thaliana... 267 3e-71
sp|P93119|TOP1_DAUCA DNA topoisomerase 1 OS=Daucus carota GN=TOP... 260 3e-69
sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces cerevi... 215 1e-55
sp|P07799|TOP1_SCHPO DNA topoisomerase 1 OS=Schizosaccharomyces ... 215 1e-55
sp|Q54RC3|TOP1_DICDI DNA topoisomerase 1 OS=Dictyostelium discoi... 204 3e-52
sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogas... 200 4e-51
sp|Q00313|TOP1_CANAL DNA topoisomerase 1 OS=Candida albicans GN=... 196 7e-50
sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1... 195 1e-49
sp|Q7YR26|TOP1_CERAE DNA topoisomerase 1 OS=Cercopithecus aethio... 195 1e-49
sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=to... 195 2e-49
sp|Q9WUL0|TOP1_RAT DNA topoisomerase 1 OS=Rattus norvegicus GN=T... 193 6e-49
sp|Q04750|TOP1_MOUSE DNA topoisomerase 1 OS=Mus musculus GN=Top1... 193 6e-49
sp|O17966|TOP1_CAEEL DNA topoisomerase 1 OS=Caenorhabditis elega... 192 8e-49
sp|Q07050|TOP1_CRIGR DNA topoisomerase 1 OS=Cricetulus griseus G... 191 3e-48
sp|Q969P6|TOP1M_HUMAN DNA topoisomerase I, mitochondrial OS=Homo... 183 6e-46
sp|P41511|TOP1_USTMA DNA topoisomerase 1 OS=Ustilago maydis GN=T... 141 3e-33
sp|P32989|TOP1_VARV DNA topoisomerase 1 OS=Variola virus GN=TOP1... 43 0.001
sp|P68698|TOP1_VACCW DNA topoisomerase 1 OS=Vaccinia virus (stra... 42 0.002
sp|P68697|TOP1_VACCC DNA topoisomerase 1 OS=Vaccinia virus (stra... 42 0.002
sp|Q76ZS7|TOP1_VACCA DNA topoisomerase 1 OS=Vaccinia virus (stra... 42 0.002
sp|Q9VGP6|PFD3_DROME Probable prefoldin subunit 3 OS=Drosophila ... 33 0.79
sp|Q09853|MON2_SCHPO Protein MON2 homolog OS=Schizosaccharomyces... 32 2.3
sp|Q6MKS2|UVRC_BDEBA UvrABC system protein C OS=Bdellovibrio bac... 32 3.0
sp|P49468|RPOC2_ODOSI DNA-directed RNA polymerase subunit beta''... 31 3.9
sp|Q9Z661|DCDA_ZYMMO Diaminopimelate decarboxylase OS=Zymomonas ... 31 3.9
sp|O74823|YBJC_SCHPO Zinc finger CCCH domain-containing protein ... 31 5.1
sp|Q5T1B0|CA125_HUMAN Uncharacterized protein C1orf125 OS=Homo s... 31 5.1
sp|Q5P7B4|SYH_AZOSE Histidyl-tRNA synthetase OS=Azoarcus sp. (st... 30 6.7
sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic ... 30 8.7
sp|P20789|NTR1_RAT Neurotensin receptor type 1 OS=Rattus norvegi... 30 8.7
>sp|P30181|TOP1_ARATH DNA topoisomerase 1 OS=Arabidopsis thaliana
GN=TOP1 PE=2 SV=1
Length = 916
Score = 267 bits (682), Expect = 3e-71
Identities = 136/193 (70%), Positives = 157/193 (81%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
EFKYVFL A SSLKG SDKEKYEKAR L D+I++IR TYTKNF + D RQIAVATYLI
Sbjct: 575 EFKYVFLGAGSSLKGLSDKEKYEKARNLTDHIDNIRTTYTKNFTAKDVKMRQIAVATYLI 634
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKDDDEADTVGCC+LKV +V +PP ++FDFLGKDSI+Y NTVEVE V+
Sbjct: 635 DKLALRAGNEKDDDEADTVGCCTLKVGNVECIPPNKIKFDFLGKDSIQYVNTVEVEPLVY 694
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-VDTDG 40
+AIG F+ K DLFD+LDTSKLNAHLK+++P LTAKVFRTYNASITLD +L +T
Sbjct: 695 KAIGQFQAGKSKTDDLFDELDTSKLNAHLKELVPGLTAKVFRTYNASITLDEMLSQETKD 754
Query: 39 QTVPEKIVSYQKA 1
V +KIV YQKA
Sbjct: 755 GDVTQKIVVYQKA 767
>sp|P93119|TOP1_DAUCA DNA topoisomerase 1 OS=Daucus carota GN=TOP1
PE=2 SV=1
Length = 790
Score = 260 bits (665), Expect = 3e-69
Identities = 139/199 (69%), Positives = 157/199 (78%), Gaps = 7/199 (3%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRT-YTKNFNSADKTKRQIAVATYL 400
EFKYVFLAASSSLKG+ +EKYEK+R LKDYIE IR YTK+F S D KRQIAVATYL
Sbjct: 424 EFKYVFLAASSSLKGKVTREKYEKSRKLKDYIEGIRAAAYTKDFASKDSKKRQIAVATYL 483
Query: 399 IDRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQV 220
ID+LALRAGNEKDDDEADTVGCC+LKVE+V P L+FDFLGKDSIRY N VEVE +V
Sbjct: 484 IDKLALRAGNEKDDDEADTVGCCTLKVENVETKRPNILKFDFLGKDSIRYQNEVEVEPRV 543
Query: 219 FRAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL----- 55
F AI F+ K+ G DLFD+LDTSKLNAHLK++MP LTAKVFRTYNASITLD ++
Sbjct: 544 FSAIEQFRSGKEGGDDLFDQLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMVRCKLL 603
Query: 54 -VDTDGQTVPEKIVSYQKA 1
+T G V EK+V YQ A
Sbjct: 604 SRETKGGDVAEKVVVYQHA 622
>sp|P04786|TOP1_YEAST DNA topoisomerase 1 OS=Saccharomyces
cerevisiae GN=TOP1 PE=1 SV=2
Length = 769
Score = 215 bits (548), Expect = 1e-55
Identities = 117/193 (60%), Positives = 145/193 (75%), Gaps = 2/193 (1%)
Frame = -3
Query: 573 FKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLID 394
FKYV LAA+SSLKGQSD +K+EKAR LK YI+ IRR YT+N S +RQ AVA YLID
Sbjct: 356 FKYVRLAANSSLKGQSDYKKFEKARQLKSYIDAIRRDYTRNLKSKVMLERQKAVAIYLID 415
Query: 393 RLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVFR 214
ALRAG EK +DEADTVGCCSL+ EHVTL PP ++ FDFLGKDSIR++ VEV++QVF+
Sbjct: 416 VFALRAGGEKSEDEADTVGCCSLRYEHVTLKPPNTVIFDFLGKDSIRFYQEVEVDKQVFK 475
Query: 213 AIGDFKK-SKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITL-DRLLVDTDG 40
+ FK+ K+ G LFD+LD S LN +L++ MP LTAKVFRTYNAS T+ D+L + +
Sbjct: 476 NLTIFKRPPKQPGHQLFDRLDPSILNKYLQNYMPGLTAKVFRTYNASKTMQDQLDLIPNK 535
Query: 39 QTVPEKIVSYQKA 1
+V EKI+ Y A
Sbjct: 536 GSVAEKILKYNAA 548
>sp|P07799|TOP1_SCHPO DNA topoisomerase 1 OS=Schizosaccharomyces
pombe GN=top1 PE=1 SV=2
Length = 814
Score = 215 bits (547), Expect = 1e-55
Identities = 114/192 (59%), Positives = 141/192 (73%), Gaps = 2/192 (1%)
Frame = -3
Query: 570 KYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLIDR 391
KYVFLAA SSLKGQSD +KYEK+R LKDYI+DIR+ Y K+ S +RQ A YLID
Sbjct: 404 KYVFLAAGSSLKGQSDLKKYEKSRKLKDYIDDIRKGYRKDLKSELTVERQRGTAMYLIDV 463
Query: 390 LALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVFRA 211
ALRAGNEK +DEADTVGCCSL+ EHVTL PPR++ FDFLGKDSIRY+N VEV+ QVF+
Sbjct: 464 FALRAGNEKGEDEADTVGCCSLRYEHVTLKPPRTVVFDFLGKDSIRYYNEVEVDPQVFKN 523
Query: 210 IGDFKK-SKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITL-DRLLVDTDGQ 37
+ FK+ KK G +FD+L T+ LN +L +M L+AKVFRTYNAS T+ + L
Sbjct: 524 LKIFKRPPKKEGDLIFDRLSTNSLNKYLTSLMDGLSAKVFRTYNASYTMAEELKKMPKNL 583
Query: 36 TVPEKIVSYQKA 1
T+ +KI+ Y +A
Sbjct: 584 TLADKILFYNRA 595
>sp|Q54RC3|TOP1_DICDI DNA topoisomerase 1 OS=Dictyostelium discoideum
GN=top1 PE=3 SV=1
Length = 893
Score = 204 bits (518), Expect = 3e-52
Identities = 107/193 (55%), Positives = 139/193 (72%), Gaps = 3/193 (1%)
Frame = -3
Query: 573 FKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLID 394
FKYV+LA SS +KGQ+D++K+E AR LK+ I DIR+ Y K+FN KRQ+AVA YLID
Sbjct: 518 FKYVWLAPSSKIKGQADRKKFEVARGLKNCIGDIRKGYQKSFNDESTEKRQLAVALYLID 577
Query: 393 RLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVFR 214
LALR GNEK +D+ADTVGCCSL+VEH+ L ++ DFLGKDS+RY NTV++ E ++
Sbjct: 578 FLALRVGNEKGEDQADTVGCCSLRVEHIKLESNNTITLDFLGKDSMRYLNTVQIREDAYK 637
Query: 213 AIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL--VDT-D 43
+ F K KK LFD L ++LN HLK M L+AKVFRTYNASITL + L +DT +
Sbjct: 638 VLKTFVKGKKPTDLLFDSLTVTQLNNHLKKQMTGLSAKVFRTYNASITLQKELDKMDTKE 697
Query: 42 GQTVPEKIVSYQK 4
Q++ EKI+ Y +
Sbjct: 698 FQSIDEKILFYNR 710
>sp|P30189|TOP1_DROME DNA topoisomerase 1 OS=Drosophila melanogaster
GN=Top1 PE=1 SV=1
Length = 972
Score = 200 bits (509), Expect = 4e-51
Identities = 111/200 (55%), Positives = 137/200 (68%), Gaps = 8/200 (4%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
+ KY+ L SS LKG+ D KYE AR L I+ IR TY + S + RQ AVA Y I
Sbjct: 646 QVKYIMLNPSSKLKGEKDHIKYETARRLDKVIDKIRATYRDEWKSKEMRVRQRAVALYFI 705
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRS-----LEFDFLGKDSIRYFNTVEV 232
D+LALRAGNEKD+D+ADTVGCCSL+VEHV L + + FDF GKDSIRY+N VEV
Sbjct: 706 DKLALRAGNEKDEDQADTVGCCSLRVEHVQLHKELNGKENVVVFDFPGKDSIRYYNEVEV 765
Query: 231 EEQVFRAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDR--- 61
E++VF+ + F + KK G DLFD+L+T LN HLK++M LTAKVFRTYNAS TL
Sbjct: 766 EKRVFKNLELFMEHKKEGDDLFDRLNTQVLNEHLKELMEGLTAKVFRTYNASKTLQSQLD 825
Query: 60 LLVDTDGQTVPEKIVSYQKA 1
LL D TVPEK+++Y +A
Sbjct: 826 LLTDPSA-TVPEKLLAYNRA 844
>sp|Q00313|TOP1_CANAL DNA topoisomerase 1 OS=Candida albicans
GN=TOP1 PE=3 SV=1
Length = 778
Score = 196 bits (498), Expect = 7e-50
Identities = 104/192 (54%), Positives = 137/192 (71%), Gaps = 2/192 (1%)
Frame = -3
Query: 570 KYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLIDR 391
KYV A +SS+KGQSD +K+E AR L+D+++ IR+ YTK S RQ+A A YLID
Sbjct: 367 KYVRFANNSSVKGQSDFKKFETARKLRDHVDSIRKDYTKMLKSEKMQDRQMATAMYLIDV 426
Query: 390 LALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVFRA 211
ALRAG EK +DEADTVGCCSL+ EHVTL PP + FD LGKDSIR++ VEV++QVF+
Sbjct: 427 FALRAGGEKGEDEADTVGCCSLRYEHVTLKPPNKVIFDLLGKDSIRFYQEVEVDKQVFKN 486
Query: 210 IGDFKKS-KKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITL-DRLLVDTDGQ 37
+ FKKS K+ G DLFD+++ S +N L++ M LTAKVFRTYNAS T+ D++ + +
Sbjct: 487 LRIFKKSPKQPGDDLFDRINPSLVNRQLQNYMKGLTAKVFRTYNASKTMQDQIDIIENEG 546
Query: 36 TVPEKIVSYQKA 1
TV EK+ + A
Sbjct: 547 TVAEKVAKFNAA 558
>sp|P11387|TOP1_HUMAN DNA topoisomerase 1 OS=Homo sapiens GN=TOP1 PE=1
SV=2
Length = 765
Score = 195 bits (496), Expect = 1e-49
Identities = 105/198 (53%), Positives = 139/198 (70%), Gaps = 8/198 (4%)
Frame = -3
Query: 570 KYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLIDR 391
KY+ L SS +KG+ D +KYE AR LK ++ IR Y +++ S + RQ AVA Y ID+
Sbjct: 425 KYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDK 484
Query: 390 LALRAGNEKDDDE-ADTVGCCSLKVEHVTLVPPRS-----LEFDFLGKDSIRYFNTVEVE 229
LALRAGNEK++ E ADTVGCCSL+VEH+ L P +EFDFLGKDSIRY+N V VE
Sbjct: 485 LALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVE 544
Query: 228 EQVFRAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-- 55
++VF+ + F ++K+ DLFD+L+T LN HL+D+M LTAKVFRTYNASITL + L
Sbjct: 545 KRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKE 604
Query: 54 VDTDGQTVPEKIVSYQKA 1
+ + +P KI+SY +A
Sbjct: 605 LTAPDENIPAKILSYNRA 622
>sp|Q7YR26|TOP1_CERAE DNA topoisomerase 1 OS=Cercopithecus aethiops
GN=TOP1 PE=2 SV=1
Length = 767
Score = 195 bits (496), Expect = 1e-49
Identities = 105/198 (53%), Positives = 139/198 (70%), Gaps = 8/198 (4%)
Frame = -3
Query: 570 KYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLIDR 391
KY+ L SS +KG+ D +KYE AR LK ++ IR Y +++ S + RQ AVA Y ID+
Sbjct: 427 KYIMLNPSSRIKGEKDWQKYETARRLKKCVDKIRNQYREDWKSKEMKVRQRAVALYFIDK 486
Query: 390 LALRAGNEKDDDE-ADTVGCCSLKVEHVTLVPPRS-----LEFDFLGKDSIRYFNTVEVE 229
LALRAGNEK++ E ADTVGCCSL+VEH+ L P +EFDFLGKDSIRY+N V VE
Sbjct: 487 LALRAGNEKEEGETADTVGCCSLRVEHINLHPELDGQEYVVEFDFLGKDSIRYYNKVPVE 546
Query: 228 EQVFRAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-- 55
++VF+ + F ++K+ DLFD+L+T LN HL+D+M LTAKVFRTYNASITL + L
Sbjct: 547 KRVFKNLQLFMENKQPEDDLFDRLNTGILNKHLQDLMEGLTAKVFRTYNASITLQQQLKE 606
Query: 54 VDTDGQTVPEKIVSYQKA 1
+ + +P KI+SY +A
Sbjct: 607 LTAPDENIPAKILSYNRA 624
>sp|P41512|TOP1_XENLA DNA topoisomerase 1 OS=Xenopus laevis GN=top1
PE=2 SV=1
Length = 829
Score = 195 bits (495), Expect = 2e-49
Identities = 107/198 (54%), Positives = 138/198 (69%), Gaps = 8/198 (4%)
Frame = -3
Query: 570 KYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLIDR 391
KY+ L SS +KG+ D +KYE AR LK +E IR TY +++ S + RQ AVA Y ID+
Sbjct: 481 KYIMLNPSSRIKGEKDWQKYETARRLKMCVEKIRNTYKEDWKSKEMKVRQRAVALYFIDK 540
Query: 390 LALRAGNEKDDDE-ADTVGCCSLKVEHVTLVPPRS-----LEFDFLGKDSIRYFNTVEVE 229
LALRAGNEK++ E ADTVGCCSL+VEH+ L +EFDF GKDSIRY+N V VE
Sbjct: 541 LALRAGNEKEEGETADTVGCCSLRVEHINLFQELDGQEFVVEFDFPGKDSIRYYNKVPVE 600
Query: 228 EQVFRAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-- 55
++VF+ + F ++K+ DLFD+L+TS LN HL+D+M LTAKVFRTYNASITL + L
Sbjct: 601 KRVFKNLQLFMENKQPDDDLFDRLNTSILNKHLQDLMEGLTAKVFRTYNASITLQQQLDE 660
Query: 54 VDTDGQTVPEKIVSYQKA 1
+ VP KI+SY +A
Sbjct: 661 LTNSDDNVPAKILSYNRA 678
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9T3W2 |
| Definition |
tr|A9T3W2|A9T3W2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
| Align length |
192 |
| Score (bit) |
310.0 |
| E-value |
3.0e-83 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914319|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_E12.
(578 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9T3W2|A9T3W2_PHYPA Predicted protein OS=Physcomitrella paten... 310 3e-83
tr|A9T368|A9T368_PHYPA Predicted protein OS=Physcomitrella paten... 308 2e-82
tr|A7PX10|A7PX10_VITVI Chromosome chr12 scaffold_36, whole genom... 293 4e-78
tr|B7ZWU7|B7ZWU7_MAIZE Putative uncharacterized protein OS=Zea m... 285 2e-75
tr|Q84ZL5|Q84ZL5_ORYSJ Os08g0154600 protein OS=Oryza sativa subs... 283 5e-75
tr|A3BPR2|A3BPR2_ORYSJ Putative uncharacterized protein OS=Oryza... 283 5e-75
tr|A2YRB7|A2YRB7_ORYSI Putative uncharacterized protein OS=Oryza... 283 5e-75
tr|A7QDA6|A7QDA6_VITVI Chromosome undetermined scaffold_80, whol... 278 1e-73
tr|B2DDA7|B2DDA7_CAMAC Topoisomerase I OS=Camptotheca acuminata ... 278 2e-73
tr|B2DDA8|B2DDA8_CATRO Topoisomerase I OS=Catharanthus roseus GN... 274 2e-72
tr|Q9ZSC8|Q9ZSC8_TOBAC Topoisomerase I OS=Nicotiana tabacum GN=T... 273 7e-72
tr|B2DDA6|B2DDA6_9GENT Topoisomerase I OS=Ophiorrhiza japonica G... 272 9e-72
tr|Q9FJ79|Q9FJ79_ARATH DNA topoisomerase I OS=Arabidopsis thalia... 270 3e-71
tr|Q8RX06|Q8RX06_ARATH Putative DNA topoisomerase I (Fragment) O... 267 4e-70
tr|Q56XA9|Q56XA9_ARATH DNA topoisomerase I (Fragment) OS=Arabido... 267 4e-70
tr|O24307|O24307_PEA Topoisomerase I OS=Pisum sativum GN=top1 PE... 267 4e-70
tr|B2DDA4|B2DDA4_9GENT Topoisomerase I OS=Ophiorrhiza pumila GN=... 264 2e-69
tr|B2DDA5|B2DDA5_9GENT Topoisomerase I OS=Ophiorrhiza liukiuensi... 261 2e-68
tr|Q9XGL1|Q9XGL1_DAUCA DNA topoisomerase I OS=Daucus carota GN=t... 246 7e-64
tr|Q6FNH4|Q6FNH4_CANGA Similar to uniprot|P04786 Saccharomyces c... 219 1e-55
tr|A8N6Y9|A8N6Y9_COPC7 Putative uncharacterized protein OS=Copri... 218 2e-55
tr|B6H1W4|B6H1W4_PENCH Pc13g03270 protein OS=Penicillium chrysog... 216 9e-55
tr|Q75CB7|Q75CB7_ASHGO ACL008Cp OS=Ashbya gossypii GN=ACL008C PE... 215 1e-54
tr|B5VRP8|B5VRP8_YEAS6 YOL006Cp-like protein OS=Saccharomyces ce... 215 1e-54
tr|B2WCA4|B2WCA4_PYRTR DNA topoisomerase 1 OS=Pyrenophora tritic... 215 1e-54
tr|A6ZNK0|A6ZNK0_YEAS7 Topoisomerase I OS=Saccharomyces cerevisi... 215 1e-54
tr|B3LJ50|B3LJ50_YEAS1 DNA topoisomerase I OS=Saccharomyces cere... 215 2e-54
tr|A7TJW1|A7TJW1_VANPO Putative uncharacterized protein OS=Vande... 214 3e-54
tr|Q2URN8|Q2URN8_ASPOR DNA topoisomerase I OS=Aspergillus oryzae... 213 5e-54
tr|O60013|O60013_PNECA DNA topoisomerase I OS=Pneumocystis carin... 213 5e-54
>tr|A9T3W2|A9T3W2_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_139910 PE=3 SV=1
Length = 632
Score = 310 bits (795), Expect = 3e-83
Identities = 154/192 (80%), Positives = 172/192 (89%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
EFKYVFLAASSSLKGQSD +KYEKAR LKDYI+DIRRTYT +F+S+D TK+QIAVATYLI
Sbjct: 295 EFKYVFLAASSSLKGQSDMQKYEKARMLKDYIDDIRRTYTHDFSSSDPTKQQIAVATYLI 354
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
DRLALRAGNEKD+DEADTVGCCSLKVEHVTLV P+SL+FDFLGKDSIRYFNTVEV+E+V+
Sbjct: 355 DRLALRAGNEKDEDEADTVGCCSLKVEHVTLVAPKSLQFDFLGKDSIRYFNTVEVDERVY 414
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLLVDTDGQ 37
+AIG FKK KK G DLF++LDT+KLN HLK IMP LTAKVFRTYNASITLD LL DT G+
Sbjct: 415 KAIGQFKKGKKEGDDLFERLDTTKLNLHLKGIMPSLTAKVFRTYNASITLDNLLQDTTGE 474
Query: 36 TVPEKIVSYQKA 1
T E I YQ+A
Sbjct: 475 TTIEIIADYQRA 486
>tr|A9T368|A9T368_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_107400 PE=3 SV=1
Length = 502
Score = 308 bits (788), Expect = 2e-82
Identities = 153/192 (79%), Positives = 173/192 (90%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
EFKYVFLAASSSLKGQSD KYEKARTLKDYI++IRRTYTK+F+S+D TK+QIAVATYLI
Sbjct: 165 EFKYVFLAASSSLKGQSDMLKYEKARTLKDYIDNIRRTYTKDFSSSDPTKQQIAVATYLI 224
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
DRLALRAGNEKD+DEADTVGCCSLKVEHV+L+ P+SL+FDFLGKDSIRYFNTVEV+E+V+
Sbjct: 225 DRLALRAGNEKDEDEADTVGCCSLKVEHVSLIAPKSLQFDFLGKDSIRYFNTVEVDERVY 284
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLLVDTDGQ 37
+AIG FKK KK G DLF++LDT+KLN HLK IMP LTAKVFRTYNASITLD LL DT G+
Sbjct: 285 KAIGQFKKGKKGGDDLFERLDTTKLNLHLKGIMPGLTAKVFRTYNASITLDTLLQDTRGE 344
Query: 36 TVPEKIVSYQKA 1
T E I YQ+A
Sbjct: 345 TTIEIIADYQRA 356
>tr|A7PX10|A7PX10_VITVI Chromosome chr12 scaffold_36, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00025855001
PE=3 SV=1
Length = 789
Score = 293 bits (751), Expect = 4e-78
Identities = 151/193 (78%), Positives = 164/193 (84%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
EFKYVFLAASSSLKGQSDKEKYEKAR LKDYI++IR TYTK+F + D KRQIAVATYLI
Sbjct: 451 EFKYVFLAASSSLKGQSDKEKYEKARLLKDYIQNIRATYTKDFTNKDTMKRQIAVATYLI 510
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKDDDEADTVGCC+LKVE+V LVPP LEFDFLGKDSIRYFNTVEVE V+
Sbjct: 511 DKLALRAGNEKDDDEADTVGCCTLKVENVALVPPNKLEFDFLGKDSIRYFNTVEVELPVY 570
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-VDTDG 40
+AIG FK K G DLFDKLDTSKLNAHLK++MP LTAKVFRTYNASITLD +L + G
Sbjct: 571 KAIGQFKTGKSGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNREARG 630
Query: 39 QTVPEKIVSYQKA 1
EKIV YQ A
Sbjct: 631 GDAMEKIVIYQHA 643
>tr|B7ZWU7|B7ZWU7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 574
Score = 285 bits (728), Expect = 2e-75
Identities = 143/193 (74%), Positives = 167/193 (86%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
+FKYVFLAASSSLKGQSDKEKYEK+R LK +I+ IR YTK+F + D T+RQIAVATYLI
Sbjct: 236 DFKYVFLAASSSLKGQSDKEKYEKSRKLKGHIQRIRENYTKDFKNKDVTRRQIAVATYLI 295
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKDDDEADTVGCC+LKV++VT +PP ++FDFLGKDSIRYFNTVEVEE V+
Sbjct: 296 DKLALRAGNEKDDDEADTVGCCTLKVDNVTCMPPNQIQFDFLGKDSIRYFNTVEVEELVY 355
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-VDTDG 40
+AI F+ KK GQDLFDK+DTS+LNAHLKD+MP LTAKVFRTYNASITLD +L +T+
Sbjct: 356 KAIEGFRAGKKPGQDLFDKIDTSRLNAHLKDLMPGLTAKVFRTYNASITLDGILHEETED 415
Query: 39 QTVPEKIVSYQKA 1
TV EKI YQ+A
Sbjct: 416 GTVLEKIAVYQRA 428
>tr|Q84ZL5|Q84ZL5_ORYSJ Os08g0154600 protein OS=Oryza sativa subsp.
japonica GN=OJ1066_B03.125 PE=3 SV=1
Length = 916
Score = 283 bits (724), Expect = 5e-75
Identities = 142/193 (73%), Positives = 168/193 (87%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
+FKYVFLAASS+LKGQSDKEKYEK+R LK ++ IR TYTK+F S DKTK+QIAVATYLI
Sbjct: 578 DFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLI 637
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKD+DEA+TVGCC+LKV++VT VPP L+FDFLGKDSIRYFNTVEVE V+
Sbjct: 638 DKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVY 697
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-VDTDG 40
+AI +F+ KK GQDLFDKLDT++LNAHLKD+MP LTAKVFRTYNASITLD +L +T+
Sbjct: 698 KAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETED 757
Query: 39 QTVPEKIVSYQKA 1
T+ EKI YQ+A
Sbjct: 758 GTLLEKIAVYQRA 770
>tr|A3BPR2|A3BPR2_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_025034 PE=4 SV=1
Length = 960
Score = 283 bits (724), Expect = 5e-75
Identities = 142/193 (73%), Positives = 168/193 (87%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
+FKYVFLAASS+LKGQSDKEKYEK+R LK ++ IR TYTK+F S DKTK+QIAVATYLI
Sbjct: 578 DFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLI 637
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKD+DEA+TVGCC+LKV++VT VPP L+FDFLGKDSIRYFNTVEVE V+
Sbjct: 638 DKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVY 697
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-VDTDG 40
+AI +F+ KK GQDLFDKLDT++LNAHLKD+MP LTAKVFRTYNASITLD +L +T+
Sbjct: 698 KAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETED 757
Query: 39 QTVPEKIVSYQKA 1
T+ EKI YQ+A
Sbjct: 758 GTLLEKIAVYQRA 770
>tr|A2YRB7|A2YRB7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_27847 PE=3 SV=1
Length = 916
Score = 283 bits (724), Expect = 5e-75
Identities = 142/193 (73%), Positives = 168/193 (87%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
+FKYVFLAASS+LKGQSDKEKYEK+R LK ++ IR TYTK+F S DKTK+QIAVATYLI
Sbjct: 578 DFKYVFLAASSALKGQSDKEKYEKSRKLKHHVHKIRDTYTKDFRSKDKTKKQIAVATYLI 637
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKD+DEA+TVGCC+LKV++VT VPP L+FDFLGKDSIRYFNTVEVE V+
Sbjct: 638 DKLALRAGNEKDEDEAETVGCCTLKVDNVTCVPPNKLQFDFLGKDSIRYFNTVEVELLVY 697
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-VDTDG 40
+AI +F+ KK GQDLFDKLDT++LNAHLKD+MP LTAKVFRTYNASITLD +L +T+
Sbjct: 698 KAIEEFRAGKKPGQDLFDKLDTTRLNAHLKDLMPGLTAKVFRTYNASITLDDILHKETED 757
Query: 39 QTVPEKIVSYQKA 1
T+ EKI YQ+A
Sbjct: 758 GTLLEKIAVYQRA 770
>tr|A7QDA6|A7QDA6_VITVI Chromosome undetermined scaffold_80, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00035757001 PE=3 SV=1
Length = 857
Score = 278 bits (712), Expect = 1e-73
Identities = 146/193 (75%), Positives = 161/193 (83%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
EFKYVFLAASSSLKGQSDKEKYEKAR LK+YI+DIR TYTK+F S D TKRQIAVATYLI
Sbjct: 520 EFKYVFLAASSSLKGQSDKEKYEKARKLKNYIKDIRATYTKDFVSKDITKRQIAVATYLI 579
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKDDDEADTVGCC+LKVE+V PP SL+FDFLGKDSIRY TVEVE V+
Sbjct: 580 DKLALRAGNEKDDDEADTVGCCTLKVENVIPEPPNSLQFDFLGKDSIRYEKTVEVELPVY 639
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLL-VDTDG 40
+AI F+ K DLFDKLDTSKLNAHLK++MP LTAKVFRTYNASITLD +L DT
Sbjct: 640 KAIEQFRVGKSGSDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDEMLNKDTKE 699
Query: 39 QTVPEKIVSYQKA 1
V +K+V YQ A
Sbjct: 700 GDVAQKVVVYQHA 712
>tr|B2DDA7|B2DDA7_CAMAC Topoisomerase I OS=Camptotheca acuminata
GN=Top1 PE=2 SV=1
Length = 894
Score = 278 bits (710), Expect = 2e-73
Identities = 146/193 (75%), Positives = 160/193 (82%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
EFKYVFLAASSSLKGQSDKEKYEKAR LKD+I+ IR YTK+F S D TKRQIAVATYLI
Sbjct: 556 EFKYVFLAASSSLKGQSDKEKYEKARLLKDFIQGIRAAYTKDFASKDITKRQIAVATYLI 615
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKDDDEADTVGCC+LKVE+V PP L+FDFLGKDSIRY N VEVE V+
Sbjct: 616 DKLALRAGNEKDDDEADTVGCCTLKVENVEPKPPSILKFDFLGKDSIRYQNEVEVELPVY 675
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLLV-DTDG 40
+AI F+ K+ G DLFDKLDTSKLNAHLK +MP LTAKVFRTYNASITLD +L +T G
Sbjct: 676 KAIQQFRTGKRGGDDLFDKLDTSKLNAHLKGLMPGLTAKVFRTYNASITLDEMLSRETKG 735
Query: 39 QTVPEKIVSYQKA 1
V EKIV YQ A
Sbjct: 736 GNVAEKIVVYQHA 748
>tr|B2DDA8|B2DDA8_CATRO Topoisomerase I OS=Catharanthus roseus GN=Top1
PE=2 SV=1
Length = 910
Score = 274 bits (701), Expect = 2e-72
Identities = 143/193 (74%), Positives = 159/193 (82%), Gaps = 1/193 (0%)
Frame = -3
Query: 576 EFKYVFLAASSSLKGQSDKEKYEKARTLKDYIEDIRRTYTKNFNSADKTKRQIAVATYLI 397
EFKYVFLAASS+LKG SDKEKYEKAR LKDYI+ IR YTK+F S D TK+QIAVATYLI
Sbjct: 570 EFKYVFLAASSTLKGLSDKEKYEKARLLKDYIQGIRAAYTKDFASKDPTKKQIAVATYLI 629
Query: 396 DRLALRAGNEKDDDEADTVGCCSLKVEHVTLVPPRSLEFDFLGKDSIRYFNTVEVEEQVF 217
D+LALRAGNEKDDDEADTVGCC+LKVE+V VPP L+FDFLGKDSIRY N VEVE VF
Sbjct: 630 DKLALRAGNEKDDDEADTVGCCTLKVENVEPVPPNILKFDFLGKDSIRYQNEVEVEAAVF 689
Query: 216 RAIGDFKKSKKNGQDLFDKLDTSKLNAHLKDIMPQLTAKVFRTYNASITLDRLLV-DTDG 40
+AI F+ K+ DLFD LDTSKLNAHLK++MP LTAKVFRTYNASITLD +L +T G
Sbjct: 690 KAIQQFRSGKEGSSDLFDLLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKG 749
Query: 39 QTVPEKIVSYQKA 1
V EK+V YQ A
Sbjct: 750 GDVAEKVVVYQHA 762
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