NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914336
Clone id YMU001_000057_G06
Library
Length 544
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TATGGAATAGGGCATGAGCACTAATTTGTGTGCACGTTATGCTTACATATGCATGAAGAT
GGCCAGGGTGTTAGTTGCAAGAAGTAACAACTAATAACTTGTATAGCTTCCTATTAGATT
TCTTTAAAAAAGTGAAATTCAAATAACCTACCAAATAGCCGGAATAGAACAATATTTTAC
ATTGCACCTCTTCTTAATAGGTGAAAACAATTTAATATCTATCTGTAGTAGCTTCCATGG
GATGGTTGGTAGTATGGTGCGGTCGAAGGGGCAGGCTGATAGGAGTAAGGAAGTTGGGGG
GGCCCTGGCGGCTGTGGCATATTTGCTGGTGGAGCATTATTGTAATATGCTGGTGGAGCA
TTTCGCTGGTGGGCTTGCCACCCAGCATATGGTGGTTGTTGGCTATAACTCTGCTGATAC
CCAACTTGTGGAGGGGGGGGCACTGTGTAGCTAGGAGAGACGCCTTGACTTGCTCCAGGA
GAGTAGTACGGAGGCGGTGTATATGCTGGATGCCTAGCTGACTCGTTGCTTTGAGCCAGT
GATC
■■Homology search results ■■ -
sp_hit_id Q8K1L0
Definition sp|Q8K1L0|CREB5_MOUSE cAMP-responsive element-binding protein 5 OS=Mus musculus
Align length 59
Score (bit) 33.9
E-value 0.52
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914336|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_G06.
         (544 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8K1L0|CREB5_MOUSE cAMP-responsive element-binding protein 5 ...    34   0.52 
sp|Q02930|CREB5_HUMAN cAMP-responsive element-binding protein 5 ...    33   0.89 
sp|P24064|CLPP_WHEAT ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|A1E9U9|CLPP_SORBI ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|Q6ENT9|CLPP_SACOF ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|Q6L377|CLPP_SACHY ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|P0C314|CLPP_ORYSJ ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|P0C313|CLPP_ORYSI ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|P0C312|CLPP_ORYSA ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|Q6ENE9|CLPP_ORYNI ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|P26567|CLPP_MAIZE ATP-dependent Clp protease proteolytic subu...    31   4.4  
sp|A1EA33|CLPP_AGRST ATP-dependent Clp protease proteolytic subu...    30   9.9  

>sp|Q8K1L0|CREB5_MOUSE cAMP-responsive element-binding protein 5
           OS=Mus musculus GN=Creb5 PE=2 SV=3
          Length = 357

 Score = 33.9 bits (76), Expect = 0.52
 Identities = 21/59 (35%), Positives = 24/59 (40%)
 Frame = -1

Query: 415 SRVIANNHHMLGGKPTSEMLHQHITIMLHQQICHSRQGPPNFLTPISLPLRPHHTTNHP 239
           SR     HH L   P     HQH T+  H    H  Q P +   P     +PHH  NHP
Sbjct: 113 SRQDQTPHHHLHSHP-----HQHQTLPPHHPYPHQHQHPAHHPHP-----QPHHQQNHP 161


>sp|Q02930|CREB5_HUMAN cAMP-responsive element-binding protein 5
           OS=Homo sapiens GN=CREB5 PE=1 SV=2
          Length = 508

 Score = 33.1 bits (74), Expect = 0.89
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -1

Query: 415 SRVIANNHHMLGGKPTSEMLHQHITIMLHQQICHSRQGPPNFLTPISLPLRPHHTTNHP 239
           SR     HH +   P     HQH T+  H    H  Q P +   P     +PHH  NHP
Sbjct: 264 SRQDQTPHHHMHSHP-----HQHQTLPPHHPYPHQHQHPAHHPHP-----QPHHQQNHP 312


>sp|P24064|CLPP_WHEAT ATP-dependent Clp protease proteolytic subunit
           OS=Triticum aestivum GN=clpP PE=3 SV=2
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144


>sp|A1E9U9|CLPP_SORBI ATP-dependent Clp protease proteolytic subunit
           OS=Sorghum bicolor GN=clpP PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144


>sp|Q6ENT9|CLPP_SACOF ATP-dependent Clp protease proteolytic subunit
           OS=Saccharum officinarum GN=clpP PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144


>sp|Q6L377|CLPP_SACHY ATP-dependent Clp protease proteolytic subunit
           OS=Saccharum hybrid GN=clpP PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144


>sp|P0C314|CLPP_ORYSJ ATP-dependent Clp protease proteolytic subunit
           OS=Oryza sativa subsp. japonica GN=clpP PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144


>sp|P0C313|CLPP_ORYSI ATP-dependent Clp protease proteolytic subunit
           OS=Oryza sativa subsp. indica GN=clpP PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144


>sp|P0C312|CLPP_ORYSA ATP-dependent Clp protease proteolytic subunit
           OS=Oryza sativa GN=clpP PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144


>sp|Q6ENE9|CLPP_ORYNI ATP-dependent Clp protease proteolytic subunit
           OS=Oryza nivara GN=clpP PE=3 SV=1
          Length = 216

 Score = 30.8 bits (68), Expect = 4.4
 Identities = 19/50 (38%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R   P FL  +
Sbjct: 96  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRARTPEFLLEV 144
tr_hit_id Q6B4Y6
Definition tr|Q6B4Y6|Q6B4Y6_9BACT Dinitrogenase reductase (Fragment) OS=uncultured bacterium
Align length 64
Score (bit) 34.3
E-value 4.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914336|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_G06.
         (544 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6B4Y6|Q6B4Y6_9BACT Dinitrogenase reductase (Fragment) OS=unc...    34   4.4  
tr|B8Y2Z8|B8Y2Z8_FESAR Clp protease proteolytic subunit OS=Festu...    34   5.8  
tr|B3P9T7|B3P9T7_DROER GG16450 OS=Drosophila erecta GN=GG16450 P...    33   7.6  
tr|Q59G47|Q59G47_HUMAN cAMP responsive element binding protein 5...    33   9.9  
tr|B5BUH3|B5BUH3_HUMAN cAMP responsive element binding protein 5...    33   9.9  
tr|B4DU13|B4DU13_HUMAN cDNA FLJ50677, highly similar to cAMP res...    33   9.9  

>tr|Q6B4Y6|Q6B4Y6_9BACT Dinitrogenase reductase (Fragment)
           OS=uncultured bacterium GN=nifH PE=4 SV=1
          Length = 146

 Score = 34.3 bits (77), Expect = 4.4
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
 Frame = -2

Query: 426 SWVSAEL*PTT--TICWVASPPAKCSTSILQ*CSTSKYATAAR--APPTSLLLSACPFDR 259
           SW SA     T    CW ASP A CST   +   TS  AT+ R  + P S    A P   
Sbjct: 17  SWSSAATPRPTPPVFCWAASPSAPCSTPSARKARTSNSATSVRKASAPRSAWNPAAPNPA 76

Query: 258 TILP 247
           + +P
Sbjct: 77  SAVP 80


>tr|B8Y2Z8|B8Y2Z8_FESAR Clp protease proteolytic subunit OS=Festuca
           arundinacea GN=clpP PE=4 SV=1
          Length = 214

 Score = 33.9 bits (76), Expect = 5.8
 Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -1

Query: 424 LGISRVIANNHHMLGGKPTSEMLHQHITIMLHQQI-CHSRQGPPNFLTPI 278
           LGI+  +A+   +LGG+PT  +   H  IMLHQ    + R G P FL  +
Sbjct: 94  LGIAASMAS-FILLGGEPTKRIAFPHARIMLHQPASAYYRAGTPEFLLEV 142


>tr|B3P9T7|B3P9T7_DROER GG16450 OS=Drosophila erecta GN=GG16450 PE=4
            SV=1
          Length = 1094

 Score = 33.5 bits (75), Expect = 7.6
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
 Frame = -1

Query: 385  LGGKPTSEMLHQHITIMLHQQICHSRQGPPNFLTPISLPLRPH---HTTNHPMEAT 227
            LGG    E+LHQH     H    H+   P + +TP +    PH   H T+H   +T
Sbjct: 964  LGGMHAIEVLHQHQQQHHHHHHHHTSNYPQHAVTPTNQQTHPHPQTHNTSHHHPST 1019


>tr|Q59G47|Q59G47_HUMAN cAMP responsive element binding protein 5
           isoform beta variant (Fragment) OS=Homo sapiens PE=2
           SV=1
          Length = 368

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -1

Query: 415 SRVIANNHHMLGGKPTSEMLHQHITIMLHQQICHSRQGPPNFLTPISLPLRPHHTTNHP 239
           SR     HH +   P     HQH T+  H    H  Q P +   P     +PHH  NHP
Sbjct: 124 SRQDQTPHHHMHSHP-----HQHQTLPPHHPYPHQHQHPAHHPHP-----QPHHQQNHP 172


>tr|B5BUH3|B5BUH3_HUMAN cAMP responsive element binding protein 5
           isoform alpha (CAMP responsive element binding protein
           5, isoform CRA_c) (Fragment) OS=Homo sapiens GN=CREB5
           PE=2 SV=1
          Length = 508

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -1

Query: 415 SRVIANNHHMLGGKPTSEMLHQHITIMLHQQICHSRQGPPNFLTPISLPLRPHHTTNHP 239
           SR     HH +   P     HQH T+  H    H  Q P +   P     +PHH  NHP
Sbjct: 264 SRQDQTPHHHMHSHP-----HQHQTLPPHHPYPHQHQHPAHHPHP-----QPHHQQNHP 312


>tr|B4DU13|B4DU13_HUMAN cDNA FLJ50677, highly similar to cAMP
           response element-binding protein 5 OS=Homo sapiens
           GN=CREB5 PE=2 SV=1
          Length = 369

 Score = 33.1 bits (74), Expect = 9.9
 Identities = 20/59 (33%), Positives = 24/59 (40%)
 Frame = -1

Query: 415 SRVIANNHHMLGGKPTSEMLHQHITIMLHQQICHSRQGPPNFLTPISLPLRPHHTTNHP 239
           SR     HH +   P     HQH T+  H    H  Q P +   P     +PHH  NHP
Sbjct: 125 SRQDQTPHHHMHSHP-----HQHQTLPPHHPYPHQHQHPAHHPHP-----QPHHQQNHP 173