| BP914338 |
| Clone id |
YMU001_000057_G09 |
| Library |
YMU01 |
| Length |
570 |
| Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000057_G09. |
| Accession |
BP914338 |
| Tissue type |
prothallium |
| Developmental stage |
- |
| Contig ID |
CL1319Contig1 |
| Sequence |
CACAGGGAACGTGGCCCTGGAACGCTGTTCTTGAATAGGAAACCTGTTCCCCTTGCTCCC TCTCTCTGGGAAGTCCCTATTTTCTTGGTCCAGACAGCTTTGTTTCTTAACCTGTTGGTG GACAAGGCTGCCTCGCCTTATGGTAAGTAAACTGTGTGTGTGTTGGTAAGGACATCCGCT ACCACAACTCTTTCTGCCCGGTTTCCTACTCAGTTCCCACCTTTGCTAGCAGACACTAGA CAAACGGGTTTCCTCTAGGTCTTTTGGCTTTCCTTTCTTCGCCTTTGGGTTCGGTTGATG ACCCTCTTTTAGAACTTTGCAGCTGATTCCCTTTTGGCATGTTGCCTTTGCCTCACCTGT TTTGTCCTCCCTTCTCCTCTGGCAGTCCTTTAGCAGCTTCTGGGAGCATGGGCTGAGCTG TTATGGGAGTTCCTTCTATGTGTCTAGATTGGTGAGTCCTGGTCATCTCTACTTTTGTCG GGCATCGATTGCAGTTTACATGGTTTGCTAGTTGTTCACTCCTCCCACTGTCATCTTCTA TAGTCCAAGGAGGCTTTGTGGTTTACCTTC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P05006 |
| Definition |
sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus |
| Align length |
53 |
| Score (bit) |
33.9 |
| E-value |
0.59 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914338|Adiantum capillus-veneris mRNA, clone: YMU001_000057_G09. (570 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus PE=3 ... 34 0.59 sp|P05005|IFNA3_HORSE Interferon alpha-3 OS=Equus caballus PE=3 ... 34 0.59 sp|P05004|IFNA2_HORSE Interferon alpha-2 OS=Equus caballus PE=3 ... 34 0.59 sp|P01570|IFN14_HUMAN Interferon alpha-14 OS=Homo sapiens GN=IFN... 33 0.77 sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo... 33 0.99 sp|P01562|IFNA1_HUMAN Interferon alpha-1/13 OS=Homo sapiens GN=I... 33 1.0 sp|Q5JNZ3|ZN311_HUMAN Zinc finger protein 311 OS=Homo sapiens GN... 33 1.3 sp|P05003|IFNA1_HORSE Interferon alpha-1 OS=Equus caballus PE=3 ... 32 1.7 sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=... 32 2.9 sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=... 32 2.9 sp|P49877|IFNAG_BOVIN Interferon alpha-G OS=Bos taurus GN=IFNAG ... 32 2.9 sp|A7HH11|NHAA_ANADF Na(+)/H(+) antiporter nhaA OS=Anaeromyxobac... 31 4.9 sp|P49878|IFNAH_BOVIN Interferon alpha-H OS=Bos taurus GN=IFNAH ... 31 5.0 sp|P05008|IFNAB_BOVIN Interferon alpha-B OS=Bos taurus GN=IFNAB ... 31 5.0 sp|Q01RU9|FPG_SOLUE Formamidopyrimidine-DNA glycosylase OS=Solib... 31 5.0 sp|Q7Z460|CLAP1_HUMAN CLIP-associating protein 1 OS=Homo sapiens... 30 6.4 sp|Q1QH69|ENGB_NITHX Probable GTP-binding protein engB OS=Nitrob... 30 6.5 sp|Q7T3T9|ZAR1_FUGRU Zygote arrest protein 1 OS=Fugu rubripes GN... 30 8.4 sp|Q8NFC6|FA44A_HUMAN Protein FAM44A OS=Homo sapiens GN=FAM44A P... 30 8.4 sp|P05009|IFNAC_BOVIN Interferon alpha-C OS=Bos taurus GN=IFNAC ... 30 8.5
>sp|P05006|IFNA4_HORSE Interferon alpha-4 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 33.9 bits (76), Expect = 0.59 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -1
Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 SC GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 19 SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|P05005|IFNA3_HORSE Interferon alpha-3 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 33.9 bits (76), Expect = 0.59 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -1
Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 SC GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 19 SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|P05004|IFNA2_HORSE Interferon alpha-2 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 33.9 bits (76), Expect = 0.59 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 3/53 (5%) Frame = -1
Query: 189 SCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 SC GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 19 SCSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|P01570|IFN14_HUMAN Interferon alpha-14 OS=Homo sapiens GN=IFNA14 PE=1 SV=3 Length = 189
Score = 33.5 bits (75), Expect = 0.77 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -1
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + +FP+ GN+F Sbjct: 17 KSSCSLGCNLSQTHSLNNRRTLMLMAQMRRISPFSCLKDRHDFEFPQEEFDGNQF 71
>sp|Q9NS56|TOPRS_HUMAN E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1 Length = 1045
Score = 33.1 bits (74), Expect = 0.99 Identities = 21/66 (31%), Positives = 29/66 (43%) Frame = -3
Query: 460 RTHQSRHIEGTPITAQPMLPEAAKGLPEEKGGQNR*GKGNMPKGNQLQSSKRGSSTEPKG 281 R +++RH+EGT AQP A+K + GN + S R S E K Sbjct: 796 RKYKTRHLEGTNEVAQPSREFASKAKDSHYQKSSSKLDGNYKNESDTFSDSRSSDRETKH 855
Query: 280 EERKAK 263 + RK K Sbjct: 856 KRRKRK 861
>sp|P01562|IFNA1_HUMAN Interferon alpha-1/13 OS=Homo sapiens GN=IFNA1 PE=1 SV=1 Length = 189
Score = 33.1 bits (74), Expect = 1.0 Identities = 20/55 (36%), Positives = 28/55 (50%), Gaps = 3/55 (5%) Frame = -1
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 17 KSSCSLGCDLPETHSLDNRRTLMLLAQMSRISPSSCLMDRHDFGFPQEEFDGNQF 71
>sp|Q5JNZ3|ZN311_HUMAN Zinc finger protein 311 OS=Homo sapiens GN=ZNF311 PE=1 SV=2 Length = 666
Score = 32.7 bits (73), Expect = 1.3 Identities = 14/33 (42%), Positives = 21/33 (63%) Frame = -1
Query: 381 QRRREDKTGEAKATCQKGISCKVLKEGHQPNPK 283 ++ RE+K G + TC+KG + KVL + PN K Sbjct: 201 EKLREEKEGSEEVTCKKGKNQKVLSKNLNPNSK 233
>sp|P05003|IFNA1_HORSE Interferon alpha-1 OS=Equus caballus PE=3 SV=1 Length = 184
Score = 32.3 bits (72), Expect = 1.7 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%) Frame = -1
Query: 186 CGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 C GC HTHSL R L+ Q ++ SCL D+ + FP+ GN+F Sbjct: 20 CSLGCDLPHTHSLGNTRVLMLLGQMRRISPFSCLKDRNDFGFPQEVFDGNQF 71
>sp|Q8BI21|RNF38_MOUSE RING finger protein 38 OS=Mus musculus GN=Rnf38 PE=2 SV=1 Length = 518
Score = 31.6 bits (70), Expect = 2.9 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Frame = +3
Query: 150 NCVCVGKDIRYHNSFCPVSYSVPTFASRH*TNGFPL---------------GLLAFLSS- 281 N V V + H PVSY+V T A +G PL G S Sbjct: 184 NAVMVDIHDQLHQGTVPVSYTVTTVA----PHGLPLCTGQHIPACSTQQVPGCSVVFSGQ 239
Query: 282 --PLGSVDDPLLELCS*FPFGMLPLPHLFCPPFSSGSP 389 P+ SV P+L+ CS LP+P+ PP S P Sbjct: 240 HLPVCSVPPPMLQACS---VQHLPVPYAAFPPLISSDP 274
>sp|Q9H0F5|RNF38_HUMAN RING finger protein 38 OS=Homo sapiens GN=RNF38 PE=1 SV=4 Length = 515
Score = 31.6 bits (70), Expect = 2.9 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 18/98 (18%) Frame = +3
Query: 150 NCVCVGKDIRYHNSFCPVSYSVPTFASRH*TNGFPL---------------GLLAFLSS- 281 N V V + H PVSY+V T A +G PL G S Sbjct: 181 NAVMVDIHDQLHQGTVPVSYTVTTVA----PHGIPLCTGQHIPACSTQQVPGCSVVFSGQ 236
Query: 282 --PLGSVDDPLLELCS*FPFGMLPLPHLFCPPFSSGSP 389 P+ SV P+L+ CS LP+P+ PP S P Sbjct: 237 HLPVCSVPPPMLQACS---VQHLPVPYAAFPPLISSDP 271
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A5K4S8 |
| Definition |
tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasmodium vivax |
| Align length |
137 |
| Score (bit) |
39.7 |
| E-value |
0.12 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP914338|Adiantum capillus-veneris mRNA, clone: YMU001_000057_G09. (570 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasm... 40 0.12 tr|B7G0I2|B7G0I2_PHATR Predicted protein OS=Phaeodactylum tricor... 36 1.3 tr|Q95J78|Q95J78_SAGOE Interferon-alpha OS=Saguinus oedipus GN=i... 36 1.7 tr|Q1PCX2|Q1PCX2_CERAE Interferon alpha (Fragment) OS=Cercopithe... 35 3.0 tr|Q293H8|Q293H8_DROPS GA12417 OS=Drosophila pseudoobscura pseud... 35 3.8 tr|B6KBH5|B6KBH5_TOXGO Zinc finger (C2H2 type) protein, putative... 34 5.0 tr|B6CK04|B6CK04_MACMU Interferon alpha 1 OS=Macaca mulatta PE=4... 34 5.0 tr|Q7MRN8|Q7MRN8_WOLSU Putative uncharacterized protein OS=Wolin... 34 6.5 tr|A6GH03|A6GH03_9DELT ErfK/YbiS/YcfS/YnhG family protein OS=Ple... 34 6.5 tr|B6CK09|B6CK09_CERTO Interferon alpha 1 OS=Cercocebus torquatu... 34 6.6 tr|B6CK05|B6CK05_CERTO Interferon alpha 1 OS=Cercocebus torquatu... 34 6.6 tr|B6A1C4|B6A1C4_RHILW ATP dependent DNA ligase OS=Rhizobium leg... 26 7.3 tr|Q034A9|Q034A9_LACC3 Permease of the major facilitator superfa... 33 8.6 tr|B3WBB4|B3WBB4_LACCB Permease of the major facilitator superfa... 33 8.6 tr|B6CK06|B6CK06_CERTO Interferon alpha 1 OS=Cercocebus torquatu... 33 8.6 tr|B6MMT0|B6MMT0_BRAFL Putative uncharacterized protein OS=Branc... 33 8.6
>tr|A5K4S8|A5K4S8_PLAVI Putative uncharacterized protein OS=Plasmodium vivax GN=PVX_091955 PE=4 SV=1 Length = 1057
Score = 39.7 bits (91), Expect = 0.12 Identities = 36/137 (26%), Positives = 60/137 (43%), Gaps = 8/137 (5%) Frame = -1
Query: 402 QKLLKDCQRRREDKTGEAKATCQKGISCKVLKEGHQPNP--KAKKGKPKDLEETRLSSVC 229 +K K + R+ K ++K KG K K + + K+KK K K ++T+ + V Sbjct: 881 RKEAKKKSKERKSKGEKSKREKSKGEKSKREKSKGEKSKREKSKKEKSKKTKKTKPTKVK 940
Query: 228 *QRWELSRKPGRKSCGSGCPYQHTHSLLTIRRGSLVHQQVK------KQSCLDQENRDFP 67 ++ + ++ K G PY H HS R S V V+ + S +D+ + F Sbjct: 941 PKKVKPTKMKSPKKTHDGTPYSHRHS---SRSRSSVGSSVESSRSHSESSSMDKSMKHFS 997
Query: 66 ERGSKGNRFPIQEQRSR 16 +GSKG +R R Sbjct: 998 AKGSKGKAHKRDARRRR 1014
>tr|B7G0I2|B7G0I2_PHATR Predicted protein OS=Phaeodactylum tricornutum CCAP 1055/1 GN=PHATRDRAFT_36143 PE=4 SV=1 Length = 180
Score = 36.2 bits (82), Expect = 1.3 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 3/86 (3%) Frame = -2
Query: 515 TTSKPCKLQSMPDKSRDDQDSPI*THRRNSHNSSAHAPRSC*--RTARGEGRTKQVRQR- 345 ++S + Q +P++ D+ H + S S SC R R G+ K+ R R Sbjct: 6 SSSASARKQEIPEEQPRRNDTTAARHSKRSSRESDDELSSCADHRRTRNHGKKKKSRHRS 65
Query: 344 QHAKRESAAKF*KRVINRTQRRRKES 267 QH+ E K ++ + R +RRR+E+ Sbjct: 66 QHSSDEDQKKSSRKGVGRRRRRRREA 91
>tr|Q95J78|Q95J78_SAGOE Interferon-alpha OS=Saguinus oedipus GN=ifn-alpha PE=3 SV=1 Length = 189
Score = 35.8 bits (81), Expect = 1.7 Identities = 24/66 (36%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -1
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRFPIQEQ 25 + SC GC THSL R L+ Q ++ SCL D+ + +FP+ GN+F Q Sbjct: 17 KSSCSLGCDLPQTHSLGNRRTLMLLAQMRRISPFSCLKDRRDFEFPQEEFDGNQF----Q 72
Query: 24 RSRATF 7 ++RA F Sbjct: 73 KARAIF 78
>tr|Q1PCX2|Q1PCX2_CERAE Interferon alpha (Fragment) OS=Cercopithecus aethiops PE=2 SV=1 Length = 74
Score = 35.0 bits (79), Expect = 3.0 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%) Frame = -1
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCLDQENR--DFPERGSKGNRF 40 + C GC THSL R L+ Q ++ SC D +N DFP++ GN+F Sbjct: 17 KSGCSLGCDLPETHSLDNRRTMMLLKQMSRISPSSCSDGQNMTLDFPQQEFDGNQF 72
>tr|Q293H8|Q293H8_DROPS GA12417 OS=Drosophila pseudoobscura pseudoobscura GN=GA12417 PE=4 SV=2 Length = 579
Score = 34.7 bits (78), Expect = 3.8 Identities = 24/78 (30%), Positives = 39/78 (50%) Frame = -2
Query: 491 QSMPDKSRDDQDSPI*THRRNSHNSSAHAPRSC*RTARGEGRTKQVRQRQHAKRESAAKF 312 QS P + RD SP RR SHNS+ PR R++ + + + R+ + +S + Sbjct: 232 QSPPRRRRDSDQSP--PRRRRSHNSNQSPPRKGRRSSADQSPPR--KGRRSSPDQSPPRR 287
Query: 311 *KRVINRTQRRRKESQKT 258 + V RRRK+S ++ Sbjct: 288 RRDVDQSPDRRRKDSDQS 305
>tr|B6KBH5|B6KBH5_TOXGO Zinc finger (C2H2 type) protein, putative OS=Toxoplasma gondii ME49 GN=TGME49_059650 PE=4 SV=1 Length = 397
Score = 34.3 bits (77), Expect = 5.0 Identities = 21/106 (19%), Positives = 43/106 (40%), Gaps = 8/106 (7%) Frame = -3
Query: 535 DDSGRSEQLANHVNCNRCPTKVEMTRTHQSRHIEGTPITAQPMLPEAAKGLPEEKGGQNR 356 ++ + + H C CP K+ + RH++ + E G+P+E+ +++ Sbjct: 203 EEESQEQNFRGHFQCKLCPKKIFIFEADLERHLQSKKHLRREAEWEKEHGVPQEQEEESK 262
Query: 355 -------*GKGNMPKG-NQLQSSKRGSSTEPKGEERKAKRPRGNPF 242 K KG ++ S G S + ++K R +G+ F Sbjct: 263 ERASASSSTKERRKKGIKSVEESDSGPSPSSRRSQKKGSRSQGDEF 308
>tr|B6CK04|B6CK04_MACMU Interferon alpha 1 OS=Macaca mulatta PE=4 SV=1 Length = 189
Score = 34.3 bits (77), Expect = 5.0 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -1
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + FP++ GN+F Sbjct: 17 KSSCSLGCDLPETHSLDNRRTMMLLKQMSRISPSSCLMDRHDFGFPQQEFDGNQF 71
>tr|Q7MRN8|Q7MRN8_WOLSU Putative uncharacterized protein OS=Wolinella succinogenes GN=WS1163 PE=4 SV=1 Length = 100
Score = 33.9 bits (76), Expect = 6.5 Identities = 16/39 (41%), Positives = 22/39 (56%) Frame = +3
Query: 330 PFGMLPLPHLFCPPFSSGSPLAASGSMG*AVMGVPSMCL 446 P GM P+PHL P G+P GS+ A+MG +C+ Sbjct: 18 PTGMNPIPHLGGPILGPGAPTVLIGSLPAALMGDDCVCV 56
>tr|A6GH03|A6GH03_9DELT ErfK/YbiS/YcfS/YnhG family protein OS=Plesiocystis pacifica SIR-1 GN=PPSIR1_31038 PE=4 SV=1 Length = 619
Score = 33.9 bits (76), Expect = 6.5 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 1/82 (1%) Frame = -3
Query: 487 RCPTKVEMTRTHQSRHIEGTPITAQPMLPEAAKGLPEEKGGQNR*GKGNMPKGNQLQSSK 308 R PTK E T + R I + T +P+ E P E GG G G Sbjct: 210 RAPTKEEYVETQERRAILESERTGEPLPGEEPAPSPGEGGGDGGAAAGGDGGGEAAAGDG 269
Query: 307 RGSS-TEPKGEERKAKRPRGNP 245 G + P GEE A P P Sbjct: 270 GGEALPAPDGEEAPAPEPAPEP 291
>tr|B6CK09|B6CK09_CERTO Interferon alpha 1 OS=Cercocebus torquatus atys PE=4 SV=1 Length = 189
Score = 33.9 bits (76), Expect = 6.6 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%) Frame = -1
Query: 195 RKSCGSGCPYQHTHSLLTIRRGSLVHQ--QVKKQSCL-DQENRDFPERGSKGNRF 40 + SC GC THSL R L+ Q ++ SCL D+ + FP++ GN+F Sbjct: 17 KSSCSLGCDLPETHSLDNRRTMMLLAQMSRISPSSCLMDRHDFGFPQQEFDGNQF 71
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