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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914339
Clone id YMU001_000057_G10
Library
Length 562
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_G10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGGTACTCCTCCAAAAGAATTGTCTAAGGTGTTGGAGATTCTGGAAGAATCATGGAACAG
CTAGAAGTGCCAATGTGTGGCCATTAGAGGACATGGATTCACTATGAGGATCCTAGATGT
GAAGCAGAGCTTGTGTACTTGACAATCTAGAACAGCCAATAACATTCGACGAATGCTTTG
TGAAGATGTGGGAATAGCAAGAAGATGGACAGTCTGAAGTTGAGGACTTTATGAGGTTCT
ACAGTCTGAGAAAAGTTTTAGCATACAAAGGAAAGGTAACAATGTTAGGTTATTTACTGG
TGCCTGGTTAAGTTCAGGAATCACTCGACTATCAATGTGATATGGATAGAGGAGGGCGAG
TTGGTAGATTTAGTTACTGTTGCAACTTTATCGAGAGGTCTTCTCCTTGGAGCAAACCAC
TTTTGGGGCTACAACAAGAACAGGGTCATTGTCACTAAGGGCACAGGACATTATCTATTG
CTTGAGAGGAGAGCTACTCAACTCTCCCTCATCAAACCTTAGAACTCGCTAGTGTTATCT
GATTATGGCAAAGTGTTGAACT
■■Homology search results ■■ -
sp_hit_id P94598
Definition sp|P94598|DHE3_BACTN Glutamate dehydrogenase OS=Bacteroides thetaiotaomicron
Align length 68
Score (bit) 32.3
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914339|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_G10.
         (562 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P94598|DHE3_BACTN Glutamate dehydrogenase OS=Bacteroides thet...    32   1.6  
sp|P01854|IGHE_HUMAN Ig epsilon chain C region OS=Homo sapiens G...    32   1.7  
sp|Q8NWQ6|EBH_STAAW Extracellular matrix-binding protein ebh OS=...    31   3.7  
sp|A8Z414|EBH_STAAT Extracellular matrix-binding protein ebh OS=...    31   3.7  
sp|Q5HFY8|EBH_STAAC Extracellular matrix-binding protein ebh OS=...    31   3.7  
sp|Q2FYJ6|EBH_STAA8 Extracellular matrix-binding protein ebh OS=...    31   3.7  
sp|Q2FH04|EBH_STAA3 Extracellular matrix-binding protein ebh OS=...    31   3.7  
sp|A6QGY5|EBHB_STAAE Extracellular matrix-binding protein ebhB O...    31   3.7  
sp|Q6GGX3|EBH_STAAR Extracellular matrix-binding protein ebh OS=...    31   4.8  

>sp|P94598|DHE3_BACTN Glutamate dehydrogenase OS=Bacteroides
           thetaiotaomicron GN=gdhA PE=3 SV=2
          Length = 444

 Score = 32.3 bits (72), Expect = 1.6
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 9/68 (13%)
 Frame = +3

Query: 240 YSLRKVLAYKGKVTML----GYLLVP-G*VQESLDYQCDMDR--GGRVGRFS--YCCNFI 392
           Y++ KV+   GKV       GY+  P G  +E LDY  ++     GR+  ++  Y C ++
Sbjct: 242 YTIEKVIELGGKVVTCSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYV 301

Query: 393 ERSSPWSK 416
           E + PW +
Sbjct: 302 EGAKPWGE 309


>sp|P01854|IGHE_HUMAN Ig epsilon chain C region OS=Homo sapiens
           GN=IGHE PE=1 SV=1
          Length = 428

 Score = 32.3 bits (72), Expect = 1.7
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +1

Query: 301 CLVKFRNHSTINVIWIEEGEL--VDLVTVATLSRGLL 405
           CLV      TIN+ W+E+G++  VDL T +T   G L
Sbjct: 135 CLVSGYTPGTINITWLEDGQVMDVDLSTASTTQEGEL 171


>sp|Q8NWQ6|EBH_STAAW Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain MW2) GN=ebh PE=1 SV=1
          Length = 9904

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +1

Query: 343  WIEEGELVDLVTVATLSRGLLLGANHFWGYNKNRVIVTKGTGHYLLLERRATQLSLIKP 519
            W++E     +  +A  + G+ + A  F   +  +V+ T+G+G  +  E+R+   +++ P
Sbjct: 2267 WVKEASAATVAGIAGTNNGITVAAGTFNPADTIQVVATQGSGETVSDEQRSDDFTVVAP 2325


>sp|A8Z414|EBH_STAAT Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=ebh
            PE=4 SV=1
          Length = 10421

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +1

Query: 343  WIEEGELVDLVTVATLSRGLLLGANHFWGYNKNRVIVTKGTGHYLLLERRATQLSLIKP 519
            W++E     +  +A  + G+ + A  F   +  +V+ T+G+G  +  E+R+   +++ P
Sbjct: 2267 WVKEASAATVAGIAGTNNGITVAAGTFNPADTIQVVATQGSGETVSDEQRSDDFTVVAP 2325


>sp|Q5HFY8|EBH_STAAC Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain COL) GN=ebh PE=4 SV=1
          Length = 10498

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +1

Query: 343  WIEEGELVDLVTVATLSRGLLLGANHFWGYNKNRVIVTKGTGHYLLLERRATQLSLIKP 519
            W++E     +  +A  + G+ + A  F   +  +V+ T+G+G  +  E+R+   +++ P
Sbjct: 2267 WVKEASAATVAGIAGTNNGITVAAGTFNPADTIQVVATQGSGETVSDEQRSDDFTVVAP 2325


>sp|Q2FYJ6|EBH_STAA8 Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain NCTC 8325) GN=ebh PE=1
            SV=1
          Length = 9535

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +1

Query: 343  WIEEGELVDLVTVATLSRGLLLGANHFWGYNKNRVIVTKGTGHYLLLERRATQLSLIKP 519
            W++E     +  +A  + G+ + A  F   +  +V+ T+G+G  +  E+R+   +++ P
Sbjct: 2267 WVKEASAATVAGIAGTNNGITVAAGTFNPADTIQVVATQGSGETVSDEQRSDDFTVVAP 2325


>sp|Q2FH04|EBH_STAA3 Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain USA300) GN=ebh PE=4 SV=1
          Length = 10421

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +1

Query: 343  WIEEGELVDLVTVATLSRGLLLGANHFWGYNKNRVIVTKGTGHYLLLERRATQLSLIKP 519
            W++E     +  +A  + G+ + A  F   +  +V+ T+G+G  +  E+R+   +++ P
Sbjct: 2267 WVKEASAATVAGIAGTNNGITVAAGTFNPADTIQVVATQGSGETVSDEQRSDDFTVVAP 2325


>sp|A6QGY5|EBHB_STAAE Extracellular matrix-binding protein ebhB
            OS=Staphylococcus aureus (strain Newman) GN=ebhB PE=4
            SV=1
          Length = 7031

 Score = 31.2 bits (69), Expect = 3.7
 Identities = 13/59 (22%), Positives = 31/59 (52%)
 Frame = +1

Query: 343  WIEEGELVDLVTVATLSRGLLLGANHFWGYNKNRVIVTKGTGHYLLLERRATQLSLIKP 519
            W++E     +  +A  + G+ + A  F   +  +V+ T+G+G  +  E+R+   +++ P
Sbjct: 2267 WVKEASAATVAGIAGTNNGITVAAGTFNPADTIQVVATQGSGETVSDEQRSDDFTVVAP 2325


>sp|Q6GGX3|EBH_STAAR Extracellular matrix-binding protein ebh
            OS=Staphylococcus aureus (strain MRSA252) GN=ebh PE=4
            SV=1
          Length = 10746

 Score = 30.8 bits (68), Expect = 4.8
 Identities = 12/59 (20%), Positives = 31/59 (52%)
 Frame = +1

Query: 343  WIEEGELVDLVTVATLSRGLLLGANHFWGYNKNRVIVTKGTGHYLLLERRATQLSLIKP 519
            W++E    ++  +A  + G+ + A  F   +  + + T+G+G  +  E+R+   +++ P
Sbjct: 2263 WVKEASAANVAGIAGTNNGITVAAGTFNPADTIQAVATQGSGETISDEQRSDDFTVVAP 2321
tr_hit_id Q5ZWT0
Definition tr|Q5ZWT0|Q5ZWT0_LEGPH LvrA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513)
Align length 95
Score (bit) 33.5
E-value 8.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914339|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_G10.
         (562 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5ZWT0|Q5ZWT0_LEGPH LvrA OS=Legionella pneumophila subsp. pne...    33   8.1  

>tr|Q5ZWT0|Q5ZWT0_LEGPH LvrA OS=Legionella pneumophila subsp.
           pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM
           7513) GN=lvrA PE=4 SV=1
          Length = 303

 Score = 33.5 bits (75), Expect = 8.1
 Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 2/95 (2%)
 Frame = +3

Query: 177 FVKMWE*QEDGQSEVEDFMRFYSLRKVLAYKGKVTMLGYLLVPG*VQESLDYQCDMDRGG 356
           F K WE     Q E   F  FY L      K   T+   ++    +QE ++ + DM+  G
Sbjct: 172 FQKFWELYPQKQDETRAFQEFYKL------KPDETLFRQMMDA--LQEQIENRLDMELCG 223

Query: 357 R-VGRFSYCCNFIERSSPWSKPLLGL-QQEQGHCH 455
             V ++ +  N++ +   W+  LL + +QEQGH +
Sbjct: 224 EWVPKWKFPANWLAQQC-WNDELLPIRKQEQGHAN 257