NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914340
Clone id YMU001_000057_G11
Library
Length 596
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_G11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TTTTTTTTAAGACTAGAAACTACATACTTCATATTTATTGGAATGTCCCCGAGTTTATCT
CAAAAAGAATAGAGCAATTACAAAGGACCTCTTCAGTTGTGCAAAAAACTTCCTGAAGTT
CCAACTCTTAGCATACAGAGTACCCCACAAACCTATTCAATTGCCTCATGTCCTTCGGTG
AGAACTTTTCACCTCATGAATCATAAGAAAATAACAGGGTTGAGGTAGGAATAGCCAGAC
ATTCATAAACCCACCTATGCGCTGACCCTGTTATCTAAAGCTGAAGTGCAGGATTCATAT
CAAAGAGGAAACTCATTTTCCTGCCTCTGCACGCTTTTTGAAAGAAAGCAAAACTCCATT
CTGGCATACCATGGAATCTTACCAAGATGCCCCTATTCTATTGGCACCCAACGCCTATAC
ATTGACTCATCATGTGCATAGTGTCAAAACCTTATGTCATCTTGTTTTGAATCTGCCGGT
GAACGTGGACAAGGTACTCCACATACGAAAGACCCAAAGCATTCTTGTCCTCCGCAAGAA
GTGAAAAGAAAAGAAACTCCAACGGATCTCCTCTTCGGCACCAGTGGAATCGCAAG
■■Homology search results ■■ -
sp_hit_id Q9M291
Definition sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana
Align length 47
Score (bit) 50.1
E-value 9.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914340|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_G11.
         (596 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF O...    50   9e-06
sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo s...    35   0.22 
sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewane...    33   1.1  
sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo s...    32   1.9  
sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewane...    32   2.4  
sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos ta...    31   5.4  
sp|Q0HR40|MUTL_SHESR DNA mismatch repair protein mutL OS=Shewane...    31   5.4  
sp|Q0HMP1|MUTL_SHESM DNA mismatch repair protein mutL OS=Shewane...    31   5.4  
sp|Q8EJ70|MUTL_SHEON DNA mismatch repair protein mutL OS=Shewane...    31   5.4  
sp|A6WSV4|MUTL_SHEB8 DNA mismatch repair protein mutL OS=Shewane...    31   5.4  
sp|O95486|SC24A_HUMAN Protein transport protein Sec24A OS=Homo s...    30   7.1  
sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculu...    30   7.1  
sp|Q6R2V0|HSN2_PIG Protein HSN2 OS=Sus scrofa GN=HSN2 PE=2 SV=1        30   7.1  
sp|A3D022|MUTL_SHEB5 DNA mismatch repair protein mutL OS=Shewane...    30   9.2  
sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapien...    30   9.2  
sp|Q27519|C13A7_CAEEL Putative cytochrome P450 CYP13A7 OS=Caenor...    30   9.2  
sp|Q27513|C13A4_CAEEL Putative cytochrome P450 CYP13A4 OS=Caenor...    30   9.2  

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF
            OS=Arabidopsis thaliana GN=CEF PE=1 SV=2
          Length = 1097

 Score = 50.1 bits (118), Expect = 9e-06
 Identities = 24/47 (51%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
 Frame = -2

Query: 595  LRFHWCRRGDPL-EFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKM 458
            LR   C++GDP    LF S + ED+ + G SYV++LV VHRQIQ+K+
Sbjct: 1050 LRIKLCKKGDPAGNMLFQSYMVEDRGSGGASYVDFLVSVHRQIQHKL 1096


>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo
            sapiens GN=SEC24C PE=1 SV=2
          Length = 1094

 Score = 35.4 bits (80), Expect = 0.22
 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%)
 Frame = -2

Query: 577  RRGDPLEFLFFSLLAEDKNALG-LSYVEYLVHVHRQIQNKMT 455
            ++ D +E LF   L EDK+  G  SYV++L H+H++I+  ++
Sbjct: 1053 KQEDKMEMLFKHFLVEDKSLSGGASYVDFLCHMHKEIRQLLS 1094


>sp|A0KSR5|MUTL_SHESA DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain ANA-3) GN=mutL PE=3 SV=1
          Length = 648

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = +2

Query: 320 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVKTLCHLVLNLPVNVDKVL 499
           PA  RFLK  KT F H  E  +   ++     +TLTH+   V+  C   +N P  + ++ 
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKIVRN-CRPAMNEPQYLQRLT 213

Query: 500 HIRKTQ 517
            +   Q
Sbjct: 214 QVAGRQ 219


>sp|O95487|SC24B_HUMAN Protein transport protein Sec24B OS=Homo
            sapiens GN=SEC24B PE=1 SV=2
          Length = 1268

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 586  HWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQI 470
            H  +   P +  FF  L ED+     SY E+L+HV +QI
Sbjct: 1228 HIVKDESPAKAEFFQHLIEDRTEAAFSYYEFLLHVQQQI 1266


>sp|Q07XW5|MUTL_SHEFN DNA mismatch repair protein mutL OS=Shewanella
           frigidimarina (strain NCIMB 400) GN=mutL PE=3 SV=1
          Length = 619

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = +2

Query: 320 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 448
           PA  RFLK  KT F H  E  +   I+ +   +TLTH+   V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIAIVRSDIHFTLTHNAKLVR 197


>sp|A6QNT8|SC24A_BOVIN Protein transport protein Sec24A OS=Bos taurus
            GN=SEC24A PE=2 SV=1
          Length = 1099

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 577  RRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQI 470
            R   P++  F   + ED+    LSY E+L+H+ +Q+
Sbjct: 1062 RDESPMKANFLQNMVEDRTESALSYYEFLLHIQQQV 1097


>sp|Q0HR40|MUTL_SHESR DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain MR-7) GN=mutL PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 320 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 448
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|Q0HMP1|MUTL_SHESM DNA mismatch repair protein mutL OS=Shewanella
           sp. (strain MR-4) GN=mutL PE=3 SV=1
          Length = 644

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 320 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 448
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|Q8EJ70|MUTL_SHEON DNA mismatch repair protein mutL OS=Shewanella
           oneidensis GN=mutL PE=3 SV=1
          Length = 631

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 320 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 448
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 155 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 197


>sp|A6WSV4|MUTL_SHEB8 DNA mismatch repair protein mutL OS=Shewanella
           baltica (strain OS185) GN=mutL PE=3 SV=1
          Length = 630

 Score = 30.8 bits (68), Expect = 5.4
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 320 PASARFLKESKTPFWHTMESYQDAPILLAPNAYTLTHHVHSVK 448
           PA  RFLK  KT F H  E  +   ++     +TLTH+  +V+
Sbjct: 156 PARRRFLKSDKTEFTHIDEWLKRIALVRGDIHFTLTHNGKTVR 198
tr_hit_id A9S9N4
Definition tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 47
Score (bit) 68.2
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914340|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_G11.
         (596 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella paten...    68   3e-10
tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome...    66   1e-09
tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,...    62   2e-08
tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative, unclas...    62   2e-08
tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza ...    62   2e-08
tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|B8BKH9|B8BKH9_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|A3CBA1|A3CBA1_ORYSJ Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|Q0INL9|Q0INL9_ORYSJ Os12g0430000 protein OS=Oryza sativa subs...    61   6e-08
tr|A3CGV8|A3CGV8_ORYSJ Putative uncharacterized protein OS=Oryza...    61   6e-08
tr|A9S9P0|A9S9P0_PHYPA Predicted protein OS=Physcomitrella paten...    58   4e-07
tr|A4S4Y9|A4S4Y9_OSTLU Predicted protein OS=Ostreococcus lucimar...    52   3e-05
tr|Q00YP1|Q00YP1_OSTTA S24C_ARATH Protein transport protein Sec2...    51   4e-05
tr|Q27GK4|Q27GK4_ARATH Uncharacterized protein At3g44340.1 OS=Ar...    50   1e-04
tr|A7F0N1|A7F0N1_SCLS1 Putative uncharacterized protein OS=Scler...    41   0.059
tr|A6SPR1|A6SPR1_BOTFB SEC24 related gene family OS=Botryotinia ...    41   0.059
tr|Q9VQ94|Q9VQ94_DROME CG10882 OS=Drosophila melanogaster GN=CG1...    40   0.078
tr|B4Q805|B4Q805_DROSI GD22860 OS=Drosophila simulans GN=GD22860...    40   0.078
tr|B4NW71|B4NW71_DROYA GE15184 OS=Drosophila yakuba GN=GE15184 P...    40   0.078
tr|B4I2G8|B4I2G8_DROSE GM18251 OS=Drosophila sechellia GN=GM1825...    40   0.078
tr|B3N9H8|B3N9H8_DROER GG24544 OS=Drosophila erecta GN=GG24544 P...    40   0.078
tr|B3MJA3|B3MJA3_DROAN GF15295 OS=Drosophila ananassae GN=GF1529...    40   0.078
tr|A6R736|A6R736_AJECN Putative uncharacterized protein OS=Ajell...    40   0.078
tr|B5DIC2|B5DIC2_DROPS GA25950 OS=Drosophila pseudoobscura pseud...    40   0.10 
tr|B4G951|B4G951_DROPE GL19411 OS=Drosophila persimilis GN=GL194...    40   0.10 
tr|Q5B8Q0|Q5B8Q0_EMENI Putative uncharacterized protein OS=Emeri...    40   0.10 
tr|Q641I5|Q641I5_XENLA MGC80413 protein OS=Xenopus laevis GN=sec...    40   0.13 
tr|Q2UQE8|Q2UQE8_ASPOR Vesicle coat complex COPII OS=Aspergillus...    40   0.13 
tr|Q0CPA0|Q0CPA0_ASPTN Putative uncharacterized protein OS=Asper...    40   0.13 

>tr|A9S9N4|A9S9N4_PHYPA Predicted protein OS=Physcomitrella patens
            subsp. patens GN=PHYPADRAFT_76562 PE=4 SV=1
          Length = 1007

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 32/47 (68%), Positives = 37/47 (78%)
 Frame = -2

Query: 595  LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
            LR    +RGDP E LF++ L EDK+ALGLSYVEYLV  HRQIQN+MT
Sbjct: 961  LRLCMLKRGDPRELLFYNYLVEDKSALGLSYVEYLVQTHRQIQNRMT 1007


>tr|A7P0Y5|A7P0Y5_VITVI Chromosome chr19 scaffold_4, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00027411001
           PE=4 SV=1
          Length = 77

 Score = 66.2 bits (160), Expect = 1e-09
 Identities = 30/47 (63%), Positives = 36/47 (76%)
 Frame = -2

Query: 595 LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
           LR   CR+GD    LFFS + EDK A+GLSYVE+LVH+HRQIQ KM+
Sbjct: 31  LRIKLCRKGDASGMLFFSFMVEDKTAIGLSYVEFLVHIHRQIQIKMS 77


>tr|Q2R4A0|Q2R4A0_ORYSJ Protein transport protein Sec24-like CEF,
           putative, expressed OS=Oryza sativa subsp. japonica
           GN=LOC_Os11g29200 PE=4 SV=1
          Length = 810

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -2

Query: 595 LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
           LR   CRRG+P    F S L EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 764 LRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 810


>tr|Q2QSF9|Q2QSF9_ORYSJ Retrotransposon protein, putative,
            unclassified, expressed OS=Oryza sativa subsp. japonica
            GN=LOC_Os12g24250 PE=4 SV=1
          Length = 1083

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -2

Query: 595  LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
            LR   C+ GDP    F SLL EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 1037 LRLRLCKHGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1083


>tr|Q0ISQ1|Q0ISQ1_ORYSJ Os11g0482100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os11g0482100 PE=4 SV=1
          Length = 577

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -2

Query: 595 LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
           LR   CRRG+P    F S L EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 531 LRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 577


>tr|B8BPD2|B8BPD2_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_38153 PE=4 SV=1
          Length = 1094

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -2

Query: 595  LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
            LR   C+ GDP    F SLL EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 1048 LRLRLCKHGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 1094


>tr|B8BKH9|B8BKH9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36107 PE=4 SV=1
          Length = 363

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -2

Query: 595 LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
           LR   CRRG+P    F S L EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 317 LRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 363


>tr|A3CBA1|A3CBA1_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_032573 PE=4 SV=1
          Length = 834

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -2

Query: 595 LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
           LR   CRRG+P    F S L EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 788 LRLRLCRRGEPSGDFFRSFLTEDKAPGGLSYVEFLVHVHRQIQSKMT 834


>tr|B8BKI0|B8BKI0_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_36108 PE=4 SV=1
          Length = 784

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 31/47 (65%), Positives = 34/47 (72%)
 Frame = -2

Query: 595 LRFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
           LR   CRRG+P    F S L EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 738 LRLRLCRRGEPSGDFFRSFLIEDKAPGGLSYVEFLVHVHRQIQSKMT 784


>tr|Q0INL9|Q0INL9_ORYSJ Os12g0430000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0430000 PE=4 SV=1
          Length = 867

 Score = 60.8 bits (146), Expect = 6e-08
 Identities = 30/46 (65%), Positives = 33/46 (71%)
 Frame = -2

Query: 592 RFHWCRRGDPLEFLFFSLLAEDKNALGLSYVEYLVHVHRQIQNKMT 455
           R   C+ GDP    F SLL EDK   GLSYVE+LVHVHRQIQ+KMT
Sbjct: 822 RLRLCKHGDPSGDFFRSLLVEDKAPGGLSYVEFLVHVHRQIQSKMT 867