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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914348
Clone id YMU001_000057_H07
Library
Length 553
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_H07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGAGTATGCGATGGCAAAGCAACAAGTCTTGAAGGGTGTGTCTTTGACTACACAAGAAGA
TTTGGGCAGTCTTGGAACACTGCTGGGGGAAGAGTTAAGGAATGAGGTAAAGACGTGGAT
GGAAAAGAGGAAGCGCTTTTTTGGCAAAGAGGATCAAGAAAGCCTGCTTCATAGCGAATG
TAGAAGTGAAAGGAACTTGTTTGGAAAGCTGTCTGTTACAACAGATTCTTTTGACGGGGA
TGAGGAAACTACGCGCTTCAATGATCCGAACTGTCAAGTTGGGGGGCCTGCAATCGATCT
CAATACTTCTACAGAATTGGATGACGTTGTATTTGGAAAAGAGCTGGAAAATGTACTCGA
GGAGGATTGATAGCTGTTTTTGCTGCTGCATTCAGGCACTGAGGTTCACCTTCTGCTTCT
CTGGGGTTACATAATGGCAAACTGAGAAGAGATTTTGACATGTTAACATGCGTCTATTAA
CAGCACCTCCTTCGAGCAGGAGAGAGTATACTTTGTTGTCCCTTGTTTTTGGGTGCCATG
CCCAGGAGGGACG
■■Homology search results ■■ -
sp_hit_id Q54VE0
Definition sp|Q54VE0|AP4E_DICDI AP-4 complex subunit epsilon OS=Dictyostelium discoideum
Align length 51
Score (bit) 32.7
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914348|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_H07.
         (553 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q54VE0|AP4E_DICDI AP-4 complex subunit epsilon OS=Dictyosteli...    33   1.2  
sp|O66767|Y465_AQUAE Uncharacterized protein aq_465 OS=Aquifex a...    30   6.0  
sp|P10201|UL17_HHV11 Protein UL17 OS=Human herpesvirus 1 (strain...    30   7.9  

>sp|Q54VE0|AP4E_DICDI AP-4 complex subunit epsilon OS=Dictyostelium
           discoideum GN=ap4e1 PE=3 SV=1
          Length = 1080

 Score = 32.7 bits (73), Expect = 1.2
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -1

Query: 178 FAMKQAFLILFAK-KALPLFHPRLYLIP*LFPQQCSKTAQIFLCSQRHTLQ 29
           F     F IL+   K L L HP L LI     +QCSK   IFL  + H L+
Sbjct: 345 FKNNVGFAILYETIKTLTLIHPNLQLI-----EQCSKNIAIFLKGKHHNLR 390


>sp|O66767|Y465_AQUAE Uncharacterized protein aq_465 OS=Aquifex
           aeolicus GN=aq_465 PE=4 SV=1
          Length = 113

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 28/101 (27%), Positives = 41/101 (40%), Gaps = 8/101 (7%)
 Frame = -1

Query: 391 MQQQKQLSILLEYIFQLFSKYNVIQ--FCRS-----IEIDCRPPNLTVRIIEAR-SFLIP 236
           M +Q    IL+  +F +FS    I   FC       I ++   P       E     L  
Sbjct: 1   MNRQPMFFILIVLLFTVFSLKEFIPNTFCIHPKEGIIHLEKEHPKTFCEKDEVHVKVLSE 60

Query: 235 VKRICCNRQLSKQVPFTSTFAMKQAFLILFAKKALPLFHPR 113
           +K +     L K   FTS F +  +F++L  + ALP   PR
Sbjct: 61  IKNLKVQLDLDKSFSFTSPFRISLSFVVLKKQNALPEKSPR 101


>sp|P10201|UL17_HHV11 Protein UL17 OS=Human herpesvirus 1 (strain
           17) GN=UL17 PE=3 SV=1
          Length = 703

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 28/117 (23%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
 Frame = -1

Query: 382 QKQLSILLEYIFQLFSKYNVIQFCRSIEID---CRPPNLTVRIIEARSFLIPVKRICCNR 212
           ++ +S++L + +    ++ V+ +  S+       RPP L+  +  A +     +R+    
Sbjct: 380 RRSISVVLRHHYGTKQRFVVVSYENSVAWGGRRARPPLLSSALATALTEACAAERVVRPH 439

Query: 211 QLSKQVPFTSTFAMKQAFLILFAKKALPLFHPRLYLIP*LFPQQCSKTAQIFLCSQR 41
           QLS         A +   L+ F    +PL HPR  L P     + + TA+I L   R
Sbjct: 440 QLSP--------AGQAELLLRFPALEVPLRHPRPVLPPFDIAAEVAFTARIHLACLR 488
tr_hit_id B5YL44
Definition tr|B5YL44|B5YL44_THEYD Putative uncharacterized protein OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87)
Align length 37
Score (bit) 35.4
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914348|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_H07.
         (553 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B5YL44|B5YL44_THEYD Putative uncharacterized protein OS=Therm...    35   2.0  
tr|B6L767|B6L767_BRAFL Putative uncharacterized protein OS=Branc...    35   2.6  
tr|B6PUW1|B6PUW1_BRAFL Putative uncharacterized protein OS=Branc...    35   3.4  
tr|Q0HZ83|Q0HZ83_SHESR Putative uncharacterized protein OS=Shewa...    34   5.9  
tr|Q6FN05|Q6FN05_CANGA Similar to uniprot|P40963 Saccharomyces c...    33   7.7  
tr|Q75JU9|Q75JU9_DICDI Similar to Dictyostelium discoideum (Slim...    33   7.8  

>tr|B5YL44|B5YL44_THEYD Putative uncharacterized protein
           OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 /
           DSM 11347 / YP87) GN=THEYE_A1135 PE=4 SV=1
          Length = 923

 Score = 35.4 bits (80), Expect = 2.0
 Identities = 18/37 (48%), Positives = 20/37 (54%)
 Frame = +3

Query: 138 FLAKRIKKACFIANVEVKGTCLESCLLQQILLTGMRK 248
           FL K+I  ACFI  VE  G   E CL   +L T  RK
Sbjct: 77  FLFKKISNACFIEAVEAVGIIYEICLRHDLLTTFFRK 113


>tr|B6L767|B6L767_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_66937 PE=4 SV=1
          Length = 188

 Score = 35.0 bits (79), Expect = 2.6
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 222 QILLTGMRKLRASMIRTVKLGGLQSISILLQNWMTLYLEKSWKMYSRRID 371
           Q L + +RK R+ + ++  +G  +   + L  W   YL+KSWK  +R+ D
Sbjct: 10  QALSSVIRKDRSELYKSPGIGDREDWRLPLDAWQRFYLQKSWKTVARKSD 59


>tr|B6PUW1|B6PUW1_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_111239 PE=4 SV=1
          Length = 188

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 16/50 (32%), Positives = 28/50 (56%)
 Frame = +3

Query: 222 QILLTGMRKLRASMIRTVKLGGLQSISILLQNWMTLYLEKSWKMYSRRID 371
           Q L + +RK R+ + ++  +G  +   + L  W   YL+KSWK  +R+ D
Sbjct: 10  QALSSVIRKDRSDLYKSPGVGDREDWRLPLDAWQRFYLQKSWKTVARKSD 59


>tr|Q0HZ83|Q0HZ83_SHESR Putative uncharacterized protein
           OS=Shewanella sp. (strain MR-7) GN=Shewmr7_0569 PE=4
           SV=1
          Length = 476

 Score = 33.9 bits (76), Expect = 5.9
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = +3

Query: 246 KLRASMIRTVKLGGLQSISILLQNWMTLYLEKSWKMY 356
           K+  S++RT+ +    S+S+LL N MT      WK+Y
Sbjct: 229 KVGDSLVRTINIEANDSLSVLLPNLMTAQASPDWKLY 265


>tr|Q6FN05|Q6FN05_CANGA Similar to uniprot|P40963 Saccharomyces
           cerevisiae YMR127c SAS2 silencing at HMR OS=Candida
           glabrata GN=CAGL0K03773g PE=4 SV=1
          Length = 353

 Score = 33.5 bits (75), Expect = 7.7
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -3

Query: 206 FQTSSFHFYIRYEAGFLDPLC--QKSASSFPSTSLPHSLTLPPAVFQDCPNLLV*SKTHP 33
           F+   + FYI YE G   P+    K   S+   +L   LTLPP       +LL+    H 
Sbjct: 186 FKLDHYEFYIVYETGKTIPMAFFSKDLVSYNQNNLACILTLPPYQRMGLGSLLIEFSYHL 245

Query: 32  SRLVALPS 9
           SRL  + S
Sbjct: 246 SRLEGIVS 253


>tr|Q75JU9|Q75JU9_DICDI Similar to Dictyostelium discoideum (Slime
           mold). Hypothetical 97.7 kDa protein (Putative
           uncharacterized protein) OS=Dictyostelium discoideum
           GN=DDB_0168754 PE=4 SV=1
          Length = 629

 Score = 33.5 bits (75), Expect = 7.8
 Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 10/88 (11%)
 Frame = -1

Query: 364 LLEYIFQLFSKYNVIQFCRSIEIDCRPPNLTVRIIEARSFLIPVK---------RICCNR 212
           L E IF +  K+N       +E+D  PP+L   I     F  P+K          I C++
Sbjct: 281 LKELIFSIDCKFN-----HQLEVDELPPSLETLIFGEHCFKSPIKSIPTTLKHLSISCSQ 335

Query: 211 QLSKQVPFTSTF-AMKQAFLILFAKKAL 131
            L    PF     +++  +++L+ KK L
Sbjct: 336 SLRNLKPFLKNLESLELTYVLLYTKKLL 363