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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP914349
Clone id YMU001_000057_H08
Library
Length 511
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000057_H08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GATCGTGTCGGCCATACAAGCTAAAACTATATACTTCAGTTGTACGAAGAATCTCATCCC
CACAGTGGGATGGAAACCATTAAACACGAAAACAACAAATTTTTATTCTCTCTCCTCGAA
GGATATATGGCTATCCGGAGAAAGTTTTGGAGTAAGGAAATTCACCCTAACTCCAAAGAA
TTTTGAACAGAAGACCCTCAATGTTAAGTGAGAGGGCAAGTCTTTGATCAAAGTAAAGTG
CGTTTTCTTTTCGCACAAGGTATGCATATGTCTAACCAGGACGATCACGCTTGAGTCCTT
ATGAGAGTAGGATCAAGTTGGAACATTGTTCTATGAGGTGAATTGGTTTGCTAAACCATC
CCTAAGGTCACTAATTGATCTCGTATGCAGTACTTCTCCCATAGATTACCTGCTATTGTG
AGTAGGACATTACGACAGAACCTGTCACAAATTGCTGACGTGTCAAGCCACTGAAGAACA
GGGCCAACCTGTAGATCCCGTTCAAGGGGCT
■■Homology search results ■■ -
sp_hit_id Q2JTT0
Definition sp|Q2JTT0|PSBA2_SYNJA Photosystem Q(B) protein 2 OS=Synechococcus sp. (strain JA-3-3Ab)
Align length 51
Score (bit) 31.6
E-value 2.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914349|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_H08.
         (511 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2JTT0|PSBA2_SYNJA Photosystem Q(B) protein 2 OS=Synechococcu...    32   2.2  
sp|A4IFK2|S35E3_BOVIN Solute carrier family 35 member E3 OS=Bos ...    30   5.0  
sp|Q970Y6|HIS3_SULTO Phosphoribosyl-AMP cyclohydrolase OS=Sulfol...    30   5.0  
sp|Q1CMM9|MURD_YERPN UDP-N-acetylmuramoylalanine--D-glutamate li...    30   6.5  
sp|Q8ZIF1|MURD_YERPE UDP-N-acetylmuramoylalanine--D-glutamate li...    30   6.5  
sp|Q1C212|MURD_YERPA UDP-N-acetylmuramoylalanine--D-glutamate li...    30   6.5  
sp|O33778|HIS3_SULSO Phosphoribosyl-AMP cyclohydrolase OS=Sulfol...    30   6.5  
sp|O93323|CP26A_XENLA Cytochrome P450 26A1 OS=Xenopus laevis GN=...    30   6.6  
sp|A6MMQ5|YCF1_DIOEL Putative membrane protein ycf1 OS=Dioscorea...    30   8.5  

>sp|Q2JTT0|PSBA2_SYNJA Photosystem Q(B) protein 2 OS=Synechococcus
           sp. (strain JA-3-3Ab) GN=psbA2 PE=3 SV=1
          Length = 352

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 56  IPTVGWKPLNTKTTNFY--SLSSKDIWLSGESFGVRKFTLTPKNFEQKTLN 202
           IP++GW+  N+++ +F+  +L +  IW +    G+  F L   NF Q  L+
Sbjct: 264 IPSLGWR--NSRSVHFWMAALPTLGIWAAAIGIGLMAFNLNGFNFNQSILD 312


>sp|A4IFK2|S35E3_BOVIN Solute carrier family 35 member E3 OS=Bos
           taurus GN=SLC35E3 PE=2 SV=1
          Length = 313

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 18/59 (30%), Positives = 32/59 (54%)
 Frame = -2

Query: 330 NNVPT*SYSHKDSSVIVLVRHMHTLCEKKTHFTLIKDLPSHLTLRVFCSKFFGVRVNFL 154
           N + T   +   ++ +++V  + TLC KKT  T I+     +TL V  + ++ V+ NFL
Sbjct: 98  NTIGTYQLAKAMTTPVIIV--IQTLCYKKTFSTKIRLTLIPITLGVILNSYYDVKFNFL 154


>sp|Q970Y6|HIS3_SULTO Phosphoribosyl-AMP cyclohydrolase
           OS=Sulfolobus tokodaii GN=hisI PE=3 SV=1
          Length = 119

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 71  WKPLNTKTTNFYSLSSKDIWLSGESFG 151
           +K L T   +F+SLS K +WL GE+ G
Sbjct: 49  FKTLTTGYVHFWSLSRKKLWLKGETSG 75


>sp|Q1CMM9|MURD_YERPN UDP-N-acetylmuramoylalanine--D-glutamate
           ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516)
           GN=murD PE=3 SV=1
          Length = 438

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 208 LNIEGLLFKILWS*GEFPYSKTFSG*PYILRGERIKICCF 89
           L ++G L  +L   G+   S  FSG  + L+G+RIK+ CF
Sbjct: 334 LQVDGTLHLLLGGDGK---SADFSGLTHFLQGDRIKVYCF 370


>sp|Q8ZIF1|MURD_YERPE UDP-N-acetylmuramoylalanine--D-glutamate
           ligase OS=Yersinia pestis GN=murD PE=3 SV=1
          Length = 438

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 208 LNIEGLLFKILWS*GEFPYSKTFSG*PYILRGERIKICCF 89
           L ++G L  +L   G+   S  FSG  + L+G+RIK+ CF
Sbjct: 334 LQVDGTLHLLLGGDGK---SADFSGLTHFLQGDRIKVYCF 370


>sp|Q1C212|MURD_YERPA UDP-N-acetylmuramoylalanine--D-glutamate
           ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua)
           GN=murD PE=3 SV=1
          Length = 438

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = -1

Query: 208 LNIEGLLFKILWS*GEFPYSKTFSG*PYILRGERIKICCF 89
           L ++G L  +L   G+   S  FSG  + L+G+RIK+ CF
Sbjct: 334 LQVDGTLHLLLGGDGK---SADFSGLTHFLQGDRIKVYCF 370


>sp|O33778|HIS3_SULSO Phosphoribosyl-AMP cyclohydrolase
           OS=Sulfolobus solfataricus GN=hisI PE=3 SV=1
          Length = 85

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +2

Query: 71  WKPLNTKTTNFYSLSSKDIWLSGESFG 151
           +K L T   +F+SLS K +WL GE+ G
Sbjct: 11  FKTLTTGYLHFWSLSRKKLWLKGETSG 37


>sp|O93323|CP26A_XENLA Cytochrome P450 26A1 OS=Xenopus laevis
           GN=cyp26a1 PE=2 SV=1
          Length = 492

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -3

Query: 476 LQWLDTSAICDRFCRNVLLTIAGNLWEKYCIR 381
           L  L TSA+C      +LL  A  LWE YC+R
Sbjct: 3   LYTLLTSALCTLALPLLLLLTAAKLWEVYCLR 34


>sp|A6MMQ5|YCF1_DIOEL Putative membrane protein ycf1 OS=Dioscorea
           elephantipes GN=ycf1 PE=3 SV=1
          Length = 1858

 Score = 29.6 bits (65), Expect = 8.5
 Identities = 23/65 (35%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
 Frame = +2

Query: 35  FSCTKNLIPTVGWKPLNTKTTNFYSLSSKDIWL-SGESFGVRKFTLTPKNFEQKTLNVK* 211
           F   KNL+   G   LN    +  S+S    +L S  SF ++KF+L     EQKT++++ 
Sbjct: 552 FEHQKNLLD--GESVLNFIGNSLSSISIGKFYLESTHSFNLKKFSLLSLLAEQKTIDLES 609

Query: 212 EGKSL 226
           + KSL
Sbjct: 610 QAKSL 614
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP914349|Adiantum capillus-veneris mRNA, clone:
YMU001_000057_H08.
         (511 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******